Lsi02G027400.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G027400.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA photolyase family protein
Location	chr02: 33663173 .. 33665664 (-)
Sequence length	663
RNA-Seq Expression	Lsi02G027400.1
Synteny	Lsi02G027400.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TACACGTTAGCAAAAAGTGCACCAATGTGCGCACGTTAGCAAGTTCCACGCTTCCATTTTGCTCCGAGAACACTTGCCGGGCTCCACCCAATGTGAGCAGCGATTCAACCATTTTCTCTTCAAAGTTAATGGCGTCTAATTCGAGTTCTTTGACGTGGCATGATAATCCGGCATCTGAATATTGCGTCCAACGGCGCCAATTTTCTCTATTCCGTTTTCGTCATCGATCGGCATTACATGGAGCCTAATCCCACTGCGTTTTTCACCGGGATCGTCTACGGCTGGACTGAACCGCATTCTGCTTCTTCTCCAGAGTCTTGTGGACTTGGATTTGAACCTCACAAAGCTCGGCTCGCGCTTGTTGCTTCTCCACGAGGAGCCTGGCGAGGTCCTCATTCGCTGCTTGGAAGAGGTATCTAGATTATAAGTAATCTCTTACTTCGCCTTAAAGGATATTGCTATAGTAGCTGTTAATTCAACTTCCGCTTACGGTTACTAACTTATTATCCGTGGATTCATTCGCTTACTTTCTAGTGGAATGTTCAGAAGCTTTGCTTTGAGTATGATACGGATCCTTACTATCAAGTTTAAGTTAGGCGATTCTTTTGTTAATATTGAGTTAAGAGATGTAAGAGTGACTAGGTACTCCTAGTTCTGGGCATAGCGAAAGAAGGAAGAATTTTCTACTGCTTAGTTCGTCGCAAATCTGAAAAAGTGTCTATGAAATACTTAAGATCTGACGGTTCTTTCCTCCAATTTTCTCTCATAGAACCTTGAGAATTGAGATCATATTTTTATGAAATTAGAGTGTTGATTTTCACTATACTAGAAAAATTAGAATGCCAACTTTAGCAGCTTGCTAAAACAATTTCTGGTTATGTTCTGCTTGTATTCTCAGACAAGGAAATGGAAATTTGTTGGTCACTTTTGCGTCCATCTGATTTCTCGCAGAACCATGCATCTGCGGCTGGAATTGAAGTCTTCTCTCCTGTGAGCCATACTCTATTTTAACCGGCGGACATTAGTCAAAAGGTCAGTTTAAAAGGTCTCTTTTATATTGGGACATAAACATTGTTCTAGTGTGGAATTTATTGCTTAGTCAGTTGGTATATTTCCATTTTTCTCACGATGGTTAATTTGCAATGAGAATTAGTTTTATGCACGATGAATGGACACCTTTTAGAGGAGATGAAACGGAAATTTTCAAGAGGCTGGAATAGTCGTTGAGTAACAAAGTACAGATTCTTTTCTAGAATTCTTTCTGGTTCTAAGCTTCTATCTCCAAGGATCCATCTTTTTCCTCATCTTTCATCATGATCGATTTTGTGCTCTATTTTGCCAGTATGAAACTCAACTTTTGATTCACAGATATGCGCCCAAGCAGTACTGAGTACACATATATGAGCCATTGAGAACTCCTTTCAAATGGCAAACAATATTTGGAAGGGGGAAAAAACTGTAACTGGGTGTGGCCATTGGTAGCTGGTAGAACATCTCCTTAAATCATCCAAAATGAATTCATTAGTTGACTATTCCTCTACTCTGGTTATATATCAACTGTTTCCATCTACTCTCAGGACATCTTCTCTTCATTTCCTTGTATTTAGTTGATCTTATACCTATCATTACACATCTATTAAATCCTGCAAGCAAGTTGACTTTTGACAACTTCTTGCGAGACCACACTTCTAAAAACAATCGTTTATCAAATTGGTCTTGTCAAGAGATTTATGTAGTCTTATATGAACGAGTTCGGAGAGGGATAAACTAAGTATGGAAGTTGGGTTCTCAAGAAAGGGAGTGAAATATTCATCGAAGCTGTTCATGAGAGCACTTCCTTTTCTTATCTTTTAGGAGACGAATAAAATGAGAATTTTTATAACACAGTTAAAATTTTGCTGCATCATCCTCTTGGAAGTAAGGATTCAATTACTTTTAGTTGATCGTTATCAACTCAATTACTCAGGCCTACCATCTTTCTTTTTCAGTGGTATCCCATGATATAGCTACCGAAGAATGCAGGATTAAATGGCTGAAGCATACGGATTAAACAAAAGAATGAATGATTTGATAAGTGACGAAGATTTGGAGAACTTGAAACGAACTTCAAAAGAGGAATAGAGTCAAAGGTTCAAACGAAACAGAAAAGACAAACACTCATTAACTGGGTTCAGCTACCATAGTGTTTCTTTTCTGCTAACTCCCTGTTGCGGGAAGCTAATGGTGTTTAGATGTTGAAGATCCAACTCCATCCTCTTCAATTCTTCAACTCCCAGGTTGTGGGAAGTTCCACGAATACACCATTCAATTAAGACATCTGATCTCTTTGATAGTTCGTAGGCATTATTTATGCAACCCCTGTTGTTGAACTCTTGAAACTGGTTGATGTTTCTCAGAATCCAGTTCCAAAATGTCCTTGTCAAACTCTTCTTTCTGCTGCAACTAGCCAATATTACACTGATTTCTCCTATTCCATAGAGGGCACATCATAA

mRNA sequence

TACACGTTAGCAAAAAGTGCACCAATGTGCGCACGTTAGCAAGTTCCACGCTTCCATTTTGCTCCGAGAACACTTGCCGGGCTCCACCCAATGTGAGCAGCGATTCAACCATTTTCTCTTCAAAGTTAATGGCGTCTAATTCGAGTTCTTTGACGTGGCATGATAATCCGGCATCTGAATATTGCGTCCAACGGCGCCAATTTTCTCTATTCCGTTTTCGTCATCGATCGGCATTACATGGAGCCTAATCCCACTGCGTTTTTCACCGGGATCGTCTACGGCTGGACTGAACCGCATTCTGCTTCTTCTCCAGAGTCTTGTGGACTTGGATTTGAACCTCACAAAGCTCGGCTCGCGCTTGTTGCTTCTCCACGAGGAGCCTGGCGAGGTCCTCATTCGCTGCTTGGAAGAGACAAGGAAATGGAAATTTGTTGGTCACTTTTGCGTCCATCTGATTTCTCGCAGAACCATGCATCTGCGGCTGGAATTGAAGTCTTCTCTCCTTTCGTAGGCATTATTTATGCAACCCCTGTTGTTGAACTCTTGAAACTGGTTGATGTTTCTCAGAATCCAGTTCCAAAATGTCCTTGTCAAACTCTTCTTTCTGCTGCAACTAGCCAATATTACACTGATTTCTCCTATTCCATAGAGGGCACATCATAA

Coding sequence (CDS)

ATGATAATCCGGCATCTGAATATTGCGTCCAACGGCGCCAATTTTCTCTATTCCGTTTTCGTCATCGATCGGCATTACATGGAGCCTAATCCCACTGCGTTTTTCACCGGGATCGTCTACGGCTGGACTGAACCGCATTCTGCTTCTTCTCCAGAGTCTTGTGGACTTGGATTTGAACCTCACAAAGCTCGGCTCGCGCTTGTTGCTTCTCCACGAGGAGCCTGGCGAGGTCCTCATTCGCTGCTTGGAAGAGACAAGGAAATGGAAATTTGTTGGTCACTTTTGCGTCCATCTGATTTCTCGCAGAACCATGCATCTGCGGCTGGAATTGAAGTCTTCTCTCCTTTCGTAGGCATTATTTATGCAACCCCTGTTGTTGAACTCTTGAAACTGGTTGATGTTTCTCAGAATCCAGTTCCAAAATGTCCTTGTCAAACTCTTCTTTCTGCTGCAACTAGCCAATATTACACTGATTTCTCCTATTCCATAGAGGGCACATCATAA

Protein sequence

MIIRHLNIASNGANFLYSVFVIDRHYMEPNPTAFFTGIVYGWTEPHSASSPESCGLGFEPHKARLALVASPRGAWRGPHSLLGRDKEMEICWSLLRPSDFSQNHASAAGIEVFSPFVGIIYATPVVELLKLVDVSQNPVPKCPCQTLLSAATSQYYTDFSYSIEGTS

Homology

[Close]

BLAST of Lsi02G027400.1 vs. ExPASy TrEMBL
Match: A0A7J7HWA3 (Photolyase/cryptochrome alpha/beta domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_004348 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 43/131 (32.82%), Postives = 58/131 (44.27%), Query Frame = 0


Query: 6   LNIASNGANFLYSVFVIDRHYMEPNPTAFFTGIVYGWTEPHSASSPESCGLGFEPHKARL 65
           L  ASNG+ +LY VFVID HYMEP+PTAF               SP S   G    +  L
Sbjct: 50  LEYASNGSTYLYPVFVIDPHYMEPDPTAF---------------SPGSTRAGLNRIRFLL 109

Query: 66  ALVASPRGAWR--GPHSLLGRDKEMEICWSLLRPSDFS-------------------QNH 116
             +     + +  G   L+ + +  E+ +  L+  D                     +N+
Sbjct: 110 ESLVDLDSSLQKLGSRLLVFKGEPSEVLFRCLKEWDIKKLCFEYDTEPYYQALDIKVKNY 165

[Close]

BLAST of Lsi02G027400.1 vs. ExPASy TrEMBL
Match: A0A1S3CDX6 ((6-4)DNA photolyase isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499773 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.7e-04
Identity = 45/120 (37.50%), Postives = 55/120 (45.83%), Query Frame = 0


Query: 6   LNIASNGANFLYSVFVIDRHYMEPNPTAFFTGIVYGWTEPHSASSPESCGLGFEPHKARL 65
           L  A+ GANFLY VFVID HYMEP+P+AF               SP S   G   ++ R 
Sbjct: 41  LEYAAKGANFLYPVFVIDPHYMEPDPSAF---------------SPGSSRAGL--NRIRF 100

Query: 66  ALVASPRGAWRGPHSLLGRDKEMEICWSLL-----RPSD-----FSQNHASAAGIEVFSP 116
            L            SL+  D  ++   S L      P +       +N ASAAGIEVFSP
Sbjct: 101 LL-----------ESLVDLDLNLKKLGSRLLVLHGEPGEVLIRCLEENLASAAGIEVFSP 132

[Close]

BLAST of Lsi02G027400.1 vs. ExPASy TrEMBL
Match: A0A6J1KRI5 ((6-4)DNA photolyase OS=Cucurbita maxima OX=3661 GN=LOC111498021 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 7.4e-04
Identity = 42/122 (34.43%), Postives = 57/122 (46.72%), Query Frame = 0


Query: 6   LNIASNGANFLYSVFVIDRHYMEPNPTAFFTGIVYGWTE--PHSASSPESCGLGFEPHKA 65
           L  A+ GANFLY VFVID HYM+P+P+AF  G              S     +  +   +
Sbjct: 41  LEYAAKGANFLYPVFVIDPHYMKPDPSAFSPGSSRAGLNRIQFLLESLVDLDMNLKKLGS 100

Query: 66  RLALVASPRGAWRGPHSLLGRDKE----MEICWSLLRPSDFS------QNHASAAGIEVF 116
           RL ++         P  +L R  E     ++C+       +       QNHASAAG+EVF
Sbjct: 101 RLLVLHGE------PGEVLIRCLEEWNVKKLCFEYDTDPYYQALDSRVQNHASAAGVEVF 156

[Close]

BLAST of Lsi02G027400.1 vs. ExPASy TrEMBL
Match: A0A0A0KA87 (Photolyase/cryptochrome alpha/beta domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G433310 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 7.4e-04
Identity = 44/121 (36.36%), Postives = 56/121 (46.28%), Query Frame = 0


Query: 6   LNIASNGANFLYSVFVIDRHYMEPNPTAFFTGIVYGWTE--PHSASSPESCGLGFEPHKA 65
           L  A+ GA FLY VFVID HYMEP+P+AF  G              S     L  +   +
Sbjct: 41  LEYAAKGAKFLYPVFVIDPHYMEPDPSAFSLGSSRAGLNRIRFLLESLVDLDLNLKKLGS 100

Query: 66  RLALVASPRGAWRGPHSLLGRDKE---MEICWSLLRPSDFS------QNHASAAGIEVFS 116
           RL ++    G       L+   KE    ++C+       +       QNHASAAGIEVFS
Sbjct: 101 RLLVLHGEPG-----EVLIRCLKEWNVKKLCFEYDTDPYYQALDIRVQNHASAAGIEVFS 156

[Close]

BLAST of Lsi02G027400.1 vs. NCBI nr
Match: KAF5957123.1 (hypothetical protein HYC85_004348 [Camellia sinensis])

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-04
Identity = 43/131 (32.82%), Postives = 58/131 (44.27%), Query Frame = 0


Query: 6   LNIASNGANFLYSVFVIDRHYMEPNPTAFFTGIVYGWTEPHSASSPESCGLGFEPHKARL 65
           L  ASNG+ +LY VFVID HYMEP+PTAF               SP S   G    +  L
Sbjct: 50  LEYASNGSTYLYPVFVIDPHYMEPDPTAF---------------SPGSTRAGLNRIRFLL 109

Query: 66  ALVASPRGAWR--GPHSLLGRDKEMEICWSLLRPSDFS-------------------QNH 116
             +     + +  G   L+ + +  E+ +  L+  D                     +N+
Sbjct: 110 ESLVDLDSSLQKLGSRLLVFKGEPSEVLFRCLKEWDIKKLCFEYDTEPYYQALDIKVKNY 165

[Close]

BLAST of Lsi02G027400.1 vs. NCBI nr
Match: XP_028110694.1 ((6-4)DNA photolyase isoform X1 [Camellia sinensis])

HSP 1 Score: 56.2 bits (134), Expect = 3.1e-04
Identity = 43/131 (32.82%), Postives = 58/131 (44.27%), Query Frame = 0


Query: 6   LNIASNGANFLYSVFVIDRHYMEPNPTAFFTGIVYGWTEPHSASSPESCGLGFEPHKARL 65
           L  ASNG+ +LY VFVID HYMEP+PTAF               SP S   G    +  L
Sbjct: 50  LEYASNGSTYLYPVFVIDPHYMEPDPTAF---------------SPGSTRSGLNRIRFLL 109

Query: 66  ALVASPRGAWR--GPHSLLGRDKEMEICWSLLRPSDFS-------------------QNH 116
             +     + +  G   L+ + +  E+ +  L+  D                     +N+
Sbjct: 110 ESLVDLDSSLQKLGSRLLVFKGEPSEVLFRCLKEWDIKKLCFEYDTEPYYQALDIKVKNY 165

[Close]

BLAST of Lsi02G027400.1 vs. NCBI nr
Match: XP_028110695.1 ((6-4)DNA photolyase isoform X2 [Camellia sinensis])

HSP 1 Score: 56.2 bits (134), Expect = 3.1e-04
Identity = 43/131 (32.82%), Postives = 58/131 (44.27%), Query Frame = 0


Query: 6   LNIASNGANFLYSVFVIDRHYMEPNPTAFFTGIVYGWTEPHSASSPESCGLGFEPHKARL 65
           L  ASNG+ +LY VFVID HYMEP+PTAF               SP S   G    +  L
Sbjct: 50  LEYASNGSTYLYPVFVIDPHYMEPDPTAF---------------SPGSTRSGLNRIRFLL 109

Query: 66  ALVASPRGAWR--GPHSLLGRDKEMEICWSLLRPSDFS-------------------QNH 116
             +     + +  G   L+ + +  E+ +  L+  D                     +N+
Sbjct: 110 ESLVDLDSSLQKLGSRLLVFKGEPSEVLFRCLKEWDIKKLCFEYDTEPYYQALDIKVKNY 165

[Close]

BLAST of Lsi02G027400.1 vs. NCBI nr
Match: XP_028110696.1 ((6-4)DNA photolyase isoform X3 [Camellia sinensis])

HSP 1 Score: 56.2 bits (134), Expect = 3.1e-04
Identity = 43/131 (32.82%), Postives = 58/131 (44.27%), Query Frame = 0


Query: 6   LNIASNGANFLYSVFVIDRHYMEPNPTAFFTGIVYGWTEPHSASSPESCGLGFEPHKARL 65
           L  ASNG+ +LY VFVID HYMEP+PTAF               SP S   G    +  L
Sbjct: 50  LEYASNGSTYLYPVFVIDPHYMEPDPTAF---------------SPGSTRSGLNRIRFLL 109

Query: 66  ALVASPRGAWR--GPHSLLGRDKEMEICWSLLRPSDFS-------------------QNH 116
             +     + +  G   L+ + +  E+ +  L+  D                     +N+
Sbjct: 110 ESLVDLDSSLQKLGSRLLVFKGEPSEVLFRCLKEWDIKKLCFEYDTEPYYQALDIKVKNY 165

[Close]

BLAST of Lsi02G027400.1 vs. TAIR 10
Match: AT3G15620.1 (DNA photolyase family protein )

HSP 1 Score: 43.1 bits (100), Expect = 2.5e-04
Identity = 19/32 (59.38%), Postives = 23/32 (71.88%), Query Frame = 0


Query: 6  LNIASNGANFLYSVFVIDRHYMEPNPTAFFTG 38
          L  AS G+ F+Y VFVID HYME +P+AF  G
Sbjct: 42 LEYASKGSEFMYPVFVIDPHYMESDPSAFSPG 73

[Close]

BLAST of Lsi02G027400.1 vs. TAIR 10
Match: AT3G15620.2 (DNA photolyase family protein )

HSP 1 Score: 43.1 bits (100), Expect = 2.5e-04
Identity = 19/32 (59.38%), Postives = 23/32 (71.88%), Query Frame = 0


Query: 6  LNIASNGANFLYSVFVIDRHYMEPNPTAFFTG 38
          L  AS G+ F+Y VFVID HYME +P+AF  G
Sbjct: 42 LEYASKGSEFMYPVFVIDPHYMESDPSAFSPG 73

The following BLAST results are available for this feature:

BLAST of Lsi02G027400.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G027400.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J7HWA3	1.1e-04	32.82	Photolyase/cryptochrome alpha/beta domain-containing protein OS=Camellia sinensi...	[more]
A0A1S3CDX6	5.7e-04	37.50	(6-4)DNA photolyase isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499773 PE=3 SV=1	[more]
A0A6J1KRI5	7.4e-04	34.43	(6-4)DNA photolyase OS=Cucurbita maxima OX=3661 GN=LOC111498021 PE=3 SV=1	[more]
A0A0A0KA87	7.4e-04	36.36	Photolyase/cryptochrome alpha/beta domain-containing protein OS=Cucumis sativus ...	[more]

BLAST of Lsi02G027400.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF5957123.1	2.4e-04	32.82	hypothetical protein HYC85_004348 [Camellia sinensis]	[more]
XP_028110694.1	3.1e-04	32.82	(6-4)DNA photolyase isoform X1 [Camellia sinensis]	[more]
XP_028110695.1	3.1e-04	32.82	(6-4)DNA photolyase isoform X2 [Camellia sinensis]	[more]
XP_028110696.1	3.1e-04	32.82	(6-4)DNA photolyase isoform X3 [Camellia sinensis]	[more]

BLAST of Lsi02G027400.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15620.1	2.5e-04	59.38	DNA photolyase family protein	[more]
AT3G15620.2	2.5e-04	59.38	DNA photolyase family protein	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi02G027400	Lsi02G027400	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi02G027400.1.exon.1	Lsi02G027400.1.exon.1	exon
Lsi02G027400.1.exon.2	Lsi02G027400.1.exon.2	exon
Lsi02G027400.1.exon.3	Lsi02G027400.1.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi02G027400.1.CDS.3	Lsi02G027400.1.CDS.3	CDS
Lsi02G027400.1.CDS.2	Lsi02G027400.1.CDS.2	CDS
Lsi02G027400.1.CDS.1	Lsi02G027400.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi02G027400.1.five_prime_UTR.1	Lsi02G027400.1.five_prime_UTR.1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi02G027400.1	Lsi02G027400.1-protein	polypeptide