Lsi02G023950.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G023950.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Nucleolar protein 16
Location	chr02: 30629442 .. 30631212 (+)
Sequence length	986
RNA-Seq Expression	Lsi02G023950.1
Synteny	Lsi02G023950.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGGTTCGGTTATGTTTTCTAAACTACCGAACCGGAAAAACTCGGTTCCAAATTTTTTCAAAACCCCCTCAGGAAATAAACCCTACGAAATCCCAATGAGCTCTTCATCTTCCACATAGTAAACCCTAGCCACCAGTTTTCCTTTCTCCTTCCGATTCACAGAGACATTTAGAGAGATGGGAAGGTCTCGAAGAAAGTACCAGAGATCTCGGCCAAAAGTCAAGGTCGGCTTGCCCAAAAGACACCCCAATGTCTTCAAGCCATCCTTCTGCATGCCGCCGAAGCTCCGCTCTTTGCTCGCCGAACAATTTGAAGAAGATCCAACATGGGACGAGAAAGCAAGTGTCATTCACAACTATAAATCCTTCGGTGTTCTTTCTAATCCTAATTTGCTCAGTGTTCGTTCCCGCACTGATCACATCGTTGAGAGCGACTCTCTCCAGGTCCCGCCGTCTCAGCCGTCTTCTGATGACCCTGAGTCCGTGCTTGATTCTTCCGGTAGCGATGTTGAAGAGGACGGTGAGTTTGAGTTTGAATTTGGTTCTCTTTCGCTATTGTTTTAAATTTCAGCTGTGCCTCCTCATGAATCCCAATTAGTTGGCTTTTAGAAATTTGATGCCTTATGCTTCAGCTTTAGTGAATTGATCACTTGGTATAGTTTCTGCAATACCGTTAATTGTTTGGTGTTCTTGACTTGGAAGGATTGAACATTGAAGGCTTAGCAAAGATCTGAATTTCTGAATAGCTTTAAAAAGTGGCAACTTTTCATTGAATCAAAATTGCATCAAAAACTAGTTGGATTTAGTTGGTCATTGATCATGTTTGGGCAACCTTTTCATGGATATATGTGAAATGATAATAAACTGAAATATGTTAAATCACCCTTCAATCCAAAAGCTTAAGTTAATTAGTTATAGTAAATTTAATTATTTTAGTAGTTCAACACTCTCCCTCACTTTGTGATTAATCAATATTAATTGGGAAGAAAATAACATTGTAGGTGCTCTGGCACCATGTTAAATCACCAACCAACGTAAAAATTTAATTTGATGGGTTATTGAAAATTTAATTATATCAATACTTTAACAAAATAGAATGATGATTGAGATGATTGTAATGTCTTATTCGTCATGATTATGAAGGCTCATGAAGATGCCAATGCATATTTTTGAGTTGTGTTTTGGATTTGATCTTGTTCTTTCTTTTGTGTTCATTAGATTTGAAAACAGCATTGGGAAAGAAGCGCAAAGATGGGAAATCTGCATCTCTACAACCATTGACCACGATTCAGCGTGTTCATGTCGGTAGGCTAATCGAGAAATATGGAGATGATTACGAGGTAAGCCTTAGTTTTGCTTGCTTTTAAATCTGAGTAATTGGCTTTGTTTTTCTTTTTTTCTTTTCCTCATTGAAAGTTGTTCTGCAGAGGATGTTTATGGATACAAAGCTGAACTCAATGCAGCATTCTGTTGCCACTCTGGAGAAACTATGCAAAAGATATCACAGTTGTTTAGATAAGAATCCATTGATATTGATTCGTAAAAAATGAATGCTCCTTCATCTTTCAAATTGTTTTGTAACAAGAGTTGAAAACCAGATAAGGTATGATCATGAAATTTTATTGAGGAATATTGTTTTGAATCCAAATGTATGAGGCTTGAAAGATGAATCATTCTCTTGCTTGCTGCAGTTTTATTCCTTTACAGGAAATGCTCATAATTCTAATTCATGTTTAGTTGCTGGCATCTAGGGAATTTATCATTTTAGGGGG

mRNA sequence

TCGGTTCGGTTATGTTTTCTAAACTACCGAACCGGAAAAACTCGGTTCCAAATTTTTTCAAAACCCCCTCAGGAAATAAACCCTACGAAATCCCAATGAGCTCTTCATCTTCCACATAGTAAACCCTAGCCACCAGTTTTCCTTTCTCCTTCCGATTCACAGAGACATTTAGAGAGATGGGAAGGTCTCGAAGAAAGTACCAGAGATCTCGGCCAAAAGTCAAGGTCGGCTTGCCCAAAAGACACCCCAATGTCTTCAAGCCATCCTTCTGCATGCCGCCGAAGCTCCGCTCTTTGCTCGCCGAACAATTTGAAGAAGATCCAACATGGGACGAGAAAGCAAGTGTCATTCACAACTATAAATCCTTCGGTGTTCTTTCTAATCCTAATTTGCTCAGTGTTCGTTCCCGCACTGATCACATCGTTGAGAGCGACTCTCTCCAGGTCCCGCCGTCTCAGCCGTCTTCTGATGACCCTGAGTCCGTGCTTGATTCTTCCGGTAGCGATGTTGAAGAGGACGATTTGAAAACAGCATTGGGAAAGAAGCGCAAAGATGGGAAATCTGCATCTCTACAACCATTGACCACGATTCAGCGTGTTCATGTCGGTAGGCTAATCGAGAAATATGGAGATGATTACGAGAGGATGTTTATGGATACAAAGCTGAACTCAATGCAGCATTCTGTTGCCACTCTGGAGAAACTATGCAAAAGATATCACAGTTGTTTAGATAAGAATCCATTGATATTGATTCGTAAAAAATGAATGCTCCTTCATCTTTCAAATTGTTTTGTAACAAGAGTTGAAAACCAGATAAGGTATGATCATGAAATTTTATTGAGGAATATTGTTTTGAATCCAAATGTATGAGGCTTGAAAGATGAATCATTCTCTTGCTTGCTGCAGTTTTATTCCTTTACAGGAAATGCTCATAATTCTAATTCATGTTTAGTTGCTGGCATCTAGGGAATTTATCATTTTAGGGGG

Coding sequence (CDS)

ATGGGAAGGTCTCGAAGAAAGTACCAGAGATCTCGGCCAAAAGTCAAGGTCGGCTTGCCCAAAAGACACCCCAATGTCTTCAAGCCATCCTTCTGCATGCCGCCGAAGCTCCGCTCTTTGCTCGCCGAACAATTTGAAGAAGATCCAACATGGGACGAGAAAGCAAGTGTCATTCACAACTATAAATCCTTCGGTGTTCTTTCTAATCCTAATTTGCTCAGTGTTCGTTCCCGCACTGATCACATCGTTGAGAGCGACTCTCTCCAGGTCCCGCCGTCTCAGCCGTCTTCTGATGACCCTGAGTCCGTGCTTGATTCTTCCGGTAGCGATGTTGAAGAGGACGATTTGAAAACAGCATTGGGAAAGAAGCGCAAAGATGGGAAATCTGCATCTCTACAACCATTGACCACGATTCAGCGTGTTCATGTCGGTAGGCTAATCGAGAAATATGGAGATGATTACGAGAGGATGTTTATGGATACAAAGCTGAACTCAATGCAGCATTCTGTTGCCACTCTGGAGAAACTATGCAAAAGATATCACAGTTGTTTAGATAAGAATCCATTGATATTGATTCGTAAAAAATGA

Protein sequence

MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDPESVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIRKK

Homology

[Close]

BLAST of Lsi02G023950.1 vs. ExPASy TrEMBL
Match: A0A6J1JMQ4 (Nucleolar protein 16 OS=Cucurbita maxima OX=3661 GN=LOC111488281 PE=3 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 3.3e-96
Identity = 181/193 (93.78%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 1   MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHN 60
           MGRSRRKY+RSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP WDEKASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDPESVLDSSGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPS P SDDP+SVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKRKDGKSA L+PLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILIR 194
           HSCLDKNPLIL R
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of Lsi02G023950.1 vs. ExPASy TrEMBL
Match: A0A6J1GRW5 (Nucleolar protein 16 OS=Cucurbita moschata OX=3662 GN=LOC111456462 PE=3 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.7e-95
Identity = 179/193 (92.75%), Postives = 186/193 (96.37%), Query Frame = 0


Query: 1   MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHN 60
           MGRSRRKY+RSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP WDEKASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDPESVLDSSGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRTDHIVESD LQVPPS P SDDP+SVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKR+DGKSA L+PLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILIR 194
           HSCLDKNPLIL R
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of Lsi02G023950.1 vs. ExPASy TrEMBL
Match: A0A5A7VLA5 (Nucleolar protein 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00570 PE=3 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 1.8e-94
Identity = 178/194 (91.75%), Postives = 186/194 (95.88%), Query Frame = 0


Query: 1   MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHN 60
           MGRSRRKY++SRPKVKVGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDPTWDEK SVI N
Sbjct: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDPESVLDSSGSDVEEDDLKTAL 120
           YKSFGV+SNPNLLSVRSRTDHIVESDSLQVPP    SDDP+SVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPP----SDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKRKDGKSA LQPLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILIRK 195
           HSCLDKNPLIL RK
Sbjct: 181 HSCLDKNPLILTRK 190

[Close]

BLAST of Lsi02G023950.1 vs. ExPASy TrEMBL
Match: A0A1S3BSM4 (Nucleolar protein 16 OS=Cucumis melo OX=3656 GN=LOC103492822 PE=3 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 1.8e-94
Identity = 178/194 (91.75%), Postives = 186/194 (95.88%), Query Frame = 0


Query: 1   MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHN 60
           MGRSRRKY++SRPKVKVGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDPTWDEK SVI N
Sbjct: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDPESVLDSSGSDVEEDDLKTAL 120
           YKSFGV+SNPNLLSVRSRTDHIVESDSLQVPP    SDDP+SVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPP----SDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKRKDGKSA LQPLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILIRK 195
           HSCLDKNPLIL RK
Sbjct: 181 HSCLDKNPLILTRK 190

[Close]

BLAST of Lsi02G023950.1 vs. ExPASy TrEMBL
Match: A0A0A0KAV9 (Nucleolar protein 16 OS=Cucumis sativus OX=3659 GN=Csa_7G396460 PE=3 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 7.6e-93
Identity = 175/195 (89.74%), Postives = 186/195 (95.38%), Query Frame = 0


Query: 1   MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHN 60
           MGRSRRKY++SRPKVKVGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDPTWDEK SVI N
Sbjct: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDPESVLDSSGSDVEEDDLKTAL 120
           YKSFGV+SNPNLLSVRSRTDHIVESDSLQVPP    SDDP++VLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPP----SDDPDTVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKRKDGKSA LQPLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILIRKK 196
           +SCLD NPLIL RK+
Sbjct: 181 NSCLDSNPLILTRKR 191

[Close]

BLAST of Lsi02G023950.1 vs. NCBI nr
Match: XP_038898931.1 (nucleolar protein 16 [Benincasa hispida])

HSP 1 Score: 376.3 bits (965), Expect = 1.6e-100
Identity = 187/195 (95.90%), Postives = 192/195 (98.46%), Query Frame = 0


Query: 1   MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHN 60
           MGRSRRKY+RSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWD+KA VIHN
Sbjct: 1   MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDDKARVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDPESVLDSSGSDVEEDDLKTAL 120
           YKSFGV+SNPNLLSVRSRTDHIVESDSLQVPPSQP SD+P+SVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPPSDEPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKRKDGKSA LQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILIRKK 196
           HSCLDKNPLILIRKK
Sbjct: 181 HSCLDKNPLILIRKK 195

[Close]

BLAST of Lsi02G023950.1 vs. NCBI nr
Match: XP_022991747.1 (uncharacterized protein LOC111488281 [Cucurbita maxima])

HSP 1 Score: 360.9 bits (925), Expect = 6.8e-96
Identity = 181/193 (93.78%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 1   MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHN 60
           MGRSRRKY+RSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP WDEKASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDPESVLDSSGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPS P SDDP+SVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKRKDGKSA L+PLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILIR 194
           HSCLDKNPLIL R
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of Lsi02G023950.1 vs. NCBI nr
Match: XP_023547523.1 (uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 359.0 bits (920), Expect = 2.6e-95
Identity = 180/193 (93.26%), Postives = 186/193 (96.37%), Query Frame = 0


Query: 1   MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHN 60
           MGRSRRKY+RSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP WDEKASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDPESVLDSSGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPS P SDDP+SVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKRKDGKSA L+PLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILIR 194
           H CLDKNPLIL R
Sbjct: 181 HCCLDKNPLILTR 193

[Close]

BLAST of Lsi02G023950.1 vs. NCBI nr
Match: XP_022954094.1 (uncharacterized protein LOC111456462 [Cucurbita moschata] >KAG6575834.1 hypothetical protein SDJN03_26473, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 357.5 bits (916), Expect = 7.6e-95
Identity = 179/193 (92.75%), Postives = 186/193 (96.37%), Query Frame = 0


Query: 1   MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHN 60
           MGRSRRKY+RSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP WDEKASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDPESVLDSSGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRTDHIVESD LQVPPS P SDDP+SVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKR+DGKSA L+PLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILIR 194
           HSCLDKNPLIL R
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of Lsi02G023950.1 vs. NCBI nr
Match: XP_008451586.1 (PREDICTED: uncharacterized protein LOC103492822 [Cucumis melo] >KAA0068000.1 nucleolar protein 16-like [Cucumis melo var. makuwa] >TYK18127.1 nucleolar protein 16-like [Cucumis melo var. makuwa])

HSP 1 Score: 355.1 bits (910), Expect = 3.7e-94
Identity = 178/194 (91.75%), Postives = 186/194 (95.88%), Query Frame = 0


Query: 1   MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHN 60
           MGRSRRKY++SRPKVKVGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDPTWDEK SVI N
Sbjct: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDPESVLDSSGSDVEEDDLKTAL 120
           YKSFGV+SNPNLLSVRSRTDHIVESDSLQVPP    SDDP+SVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPP----SDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKRKDGKSA LQPLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILIRK 195
           HSCLDKNPLIL RK
Sbjct: 181 HSCLDKNPLILTRK 190

[Close]

BLAST of Lsi02G023950.1 vs. TAIR 10
Match: AT1G02870.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). )

HSP 1 Score: 244.6 bits (623), Expect = 6.6e-65
Identity = 124/195 (63.59%), Postives = 155/195 (79.49%), Query Frame = 0


Query: 1   MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHN 60
           M RSRRKY+ SR KV+V LPK++PN+FKP+F  PPKLR+L+    ++ P WD++ASVI N
Sbjct: 1   MARSRRKYRNSRAKVRVALPKKNPNIFKPAFNFPPKLRALMG---DDVPEWDDQASVIQN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPS-QPSSDDP---ESVLDSSGSDVEEDDL 120
           YKSFGV+SNPNLL +R+RTDH+++ DSL VPP  +P +DDP   E     SGS++EEDDL
Sbjct: 61  YKSFGVISNPNLLGIRARTDHMIQDDSLNVPPPVEPPTDDPIAKEFEPIDSGSELEEDDL 120

Query: 121 KTALGKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKL 180
           KTALGK+RKDGKSA LQPLTT+QR H+ RL+EK+GDD E M+ D KLNSMQHSVATL KL
Sbjct: 121 KTALGKQRKDGKSAPLQPLTTMQRTHIRRLVEKHGDDIEGMYRDRKLNSMQHSVATLRKL 180

Query: 181 CKRYHSCLDKNPLIL 192
           C RY    DKNP+++
Sbjct: 181 CTRYQIYKDKNPILV 192

The following BLAST results are available for this feature:

BLAST of Lsi02G023950.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G023950.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JMQ4	3.3e-96	93.78	Nucleolar protein 16 OS=Cucurbita maxima OX=3661 GN=LOC111488281 PE=3 SV=1	[more]
A0A6J1GRW5	3.7e-95	92.75	Nucleolar protein 16 OS=Cucurbita moschata OX=3662 GN=LOC111456462 PE=3 SV=1	[more]
A0A5A7VLA5	1.8e-94	91.75	Nucleolar protein 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411...	[more]
A0A1S3BSM4	1.8e-94	91.75	Nucleolar protein 16 OS=Cucumis melo OX=3656 GN=LOC103492822 PE=3 SV=1	[more]
A0A0A0KAV9	7.6e-93	89.74	Nucleolar protein 16 OS=Cucumis sativus OX=3659 GN=Csa_7G396460 PE=3 SV=1	[more]

BLAST of Lsi02G023950.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898931.1	1.6e-100	95.90	nucleolar protein 16 [Benincasa hispida]	[more]
XP_022991747.1	6.8e-96	93.78	uncharacterized protein LOC111488281 [Cucurbita maxima]	[more]
XP_023547523.1	2.6e-95	93.26	uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo]	[more]
XP_022954094.1	7.6e-95	92.75	uncharacterized protein LOC111456462 [Cucurbita moschata] >KAG6575834.1 hypothet...	[more]
XP_008451586.1	3.7e-94	91.75	PREDICTED: uncharacterized protein LOC103492822 [Cucumis melo] >KAA0068000.1 nuc...	[more]

BLAST of Lsi02G023950.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02870.1	6.6e-65	63.59	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019002	Ribosome biogenesis protein Nop16	PFAM	PF09420	Nop16	coord: 110..181 e-value: 6.8E-18 score: 65.5 coord: 3..95 e-value: 1.0E-5 score: 25.7
IPR019002	Ribosome biogenesis protein Nop16	PANTHER	PTHR13243	HSPC111 PROTEIN-RELATED	coord: 1..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..104

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi02G023950	Lsi02G023950	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi02G023950.1.exon.3	Lsi02G023950.1.exon.3	exon
Lsi02G023950.1.exon.2	Lsi02G023950.1.exon.2	exon
Lsi02G023950.1.exon.1	Lsi02G023950.1.exon.1	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi02G023950.1.five_prime_UTR.1	Lsi02G023950.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi02G023950.1.CDS.1	Lsi02G023950.1.CDS.1	CDS
Lsi02G023950.1.CDS.2	Lsi02G023950.1.CDS.2	CDS
Lsi02G023950.1.CDS.3	Lsi02G023950.1.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi02G023950.1.three_prime_UTR.1	Lsi02G023950.1.three_prime_UTR.1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi02G023950.1	Lsi02G023950.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042273	ribosomal large subunit biogenesis
cellular_component	GO:0005730	nucleolus