Lsi02G008790.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G008790.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	chr02: 8306933 .. 8308894 (-)
Sequence length	789
RNA-Seq Expression	Lsi02G008790.1
Synteny	Lsi02G008790.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTCTTCAGTCCCAACTGTAAAATTAGCTTGTTGAATTCTTTACTTCCAATGGCGGCCTCAACAATGGCTTTGTCCTCGCCCTCACTCGCTGGAAAGGCGGTGAAACTCACGCCCTCCTCCCCTGAGCTTCTCGGCAACGGTAGAGTCAGCATGAGGAAATCCGCCTCCAAGTCGGTTTCTTCTGGAAGCCCATGGTACGGACCCGACCGTGTTAAGTATTTGGGACCATTCTCCGGCGAGTCTCCGTCATATCTTACCGGAGAATTCCCCGGTGACTACGGCTGGGATACTGCCGGACTTTCCGCAGACCCTGAGACCTTCGCCAAGAACCGTGAGCTTGAAGTCATCCACTCTAGGTAACAAATCAAGCTACAATATTCTTCCATGATTTAACCCCACACAACAAAAAAAAAATACATGTAATTTCAATAACTATTTGATTTTTATTTTTTCTTCTTGAAAATTAAGTTTCTAAATACTCTTTTTTTTTTATTATTCTCTTTCTCAGATGATGTGCTCGAAATTCAAAGCTAATTTTTAAAATAATTTAATGCTCTGTATAATAACTAATTAAAATTTCAATTTTTTTTGTATTTAAAGATAAAGTTTATAAAGATGATTTCTGCTCTGCAATCTAATGATTTCAAAATTATCAAGTTTCATAAAACTAAAAAATAATATAATTTTTGAAAACTTGTTTTTATTTAATTAAATTTGACTAAGAGTTAAAATGTTGTTTTCAAAAAGATGAAGATTATTGTAAAAAATTTGTAAGAAAATAAACACAAATTACAAATAATGAATAGATTATCAAACGAGGTCTTCAAAAGTTTATATAGGTATAAGATCAAATAACAAATTTAGTTTCTACATTTAAATATCTAAACTTAACTCAATTAGTTAACACATATATACCATCACAAGATCAGAAGTTAGAATCTCTCACTCACATCTTGTGTTTAATACATGTTTGAACTTTACCAAATATTATAATGAGTTAGAAGCTTATTAAAAACAAAATTAAATGTCAAAGATTTATTAGATATATACTAGAAAATTTAGACTTAGTAAACATAATACTTTTAAACTTCAAATACCACCATACAACTCTAAATTTTTAGATCCTATTTGACAACAATTTCATTTTTAACTTTTTGTTTATGAAATTTATGTTTACTAATTTTCTCTCAATTTTACATTTACGTTTTCACCCTTCATAAATAAACATTTGAATTTATAGTCAAATTCTAAAAGTTTTTGAAAACTGTTTATAATCTTTTTTTTATTTAGTTTTCAAAATTTACTTAATTTTAATTAAAAATATTAGTAAAAAACAAATAATAAACTTTGCCGAAGGAAGTAATTATTAAAATAAGACCTTAAGAACAAAAATTGTAAATTTAACCTTAGAAAATTAAAAGAAAATAAAGTAGAGGATGTGTCATGCATTGTTGACTTGGTCGTTGCTTCAGGTGGGCTATGTTGGGAGCATTGGGCTGCGTTTTTCCAGAGCTTCTTTCCCGCAATGGCGTGAAGTTCGGAGAAGCGGTGTGGTTCAAGGCCGGTTCACAGATCTTCAGTGAAGGTGGGCTCGATTACTTAGGGAACCCGAGCTTGATCCACGCCCAAAGCATTCTAGCCATTTGGGCCTCCCAGGTGGTTCTCATGGGAGCCGTCGAGTGATACCGTATTGCCGGTGGCCCACTTGGGGAGGTGACCGACCCGATTTATCCAGGTGGGAGCTTTGACCCGTTGGGCCTTGCAGACGACCCAGAAGCCTTTGCAGAGCTGAAAGTGAAGGAGCTGAAGAATGGGAGATTGGCCATGTTCTCAATGTTTGGATTCTTCGTTCAAGCCATCGTGACAGGAAAGGGCCCACTTGAGAATCTTGCTGACCATCTTGCTGACCCAGTCAACAACAATGCTTGGGCTTATGCTACCAACTTTGTTCCTGGAAAA

mRNA sequence

AATTTCTTCAGTCCCAACTGTAAAATTAGCTTGTTGAATTCTTTACTTCCAATGGCGGCCTCAACAATGGCTTTGTCCTCGCCCTCACTCGCTGGAAAGGCGGTGAAACTCACGCCCTCCTCCCCTGAGCTTCTCGGCAACGGTAGAGTCAGCATGAGGAAATCCGCCTCCAAGTCGGTTTCTTCTGGAAGCCCATGGTACGGACCCGACCGTGTTAAGTATTTGGGACCATTCTCCGGCGAGTCTCCGTCATATCTTACCGGAGAATTCCCCGGTGACTACGGCTGGGATACTGCCGGACTTTCCGCAGACCCTGAGACCTTCGCCAAGAACCGTGAGCTTGAAGTCATCCACTCTAGGTGGGCTATGTTGGGAGCATTGGGCTGCGTTTTTCCAGAGCTTCTTTCCCGCAATGGCGTGAAGTTCGGAGAAGCGGTGTGGTTCAAGGCCGGTTCACAGATCTTCAGTGAAGGTGGGCTCGATTACTTAGGGAACCCGAGCTTGATCCACGCCCAAAGCATTCTAGCCATTTGGGCCTCCCAGGTGACCGACCCGATTTATCCAGGTGGGAGCTTTGACCCGTTGGGCCTTGCAGACGACCCAGAAGCCTTTGCAGAGCTGAAAGTGAAGGAGCTGAAGAATGGGAGATTGGCCATGTTCTCAATGTTTGGATTCTTCGTTCAAGCCATCGTGACAGGAAAGGGCCCACTTGAGAATCTTGCTGACCATCTTGCTGACCCAGTCAACAACAATGCTTGGGCTTATGCTACCAACTTTGTTCCTGGAAAA

Coding sequence (CDS)

ATGGCGGCCTCAACAATGGCTTTGTCCTCGCCCTCACTCGCTGGAAAGGCGGTGAAACTCACGCCCTCCTCCCCTGAGCTTCTCGGCAACGGTAGAGTCAGCATGAGGAAATCCGCCTCCAAGTCGGTTTCTTCTGGAAGCCCATGGTACGGACCCGACCGTGTTAAGTATTTGGGACCATTCTCCGGCGAGTCTCCGTCATATCTTACCGGAGAATTCCCCGGTGACTACGGCTGGGATACTGCCGGACTTTCCGCAGACCCTGAGACCTTCGCCAAGAACCGTGAGCTTGAAGTCATCCACTCTAGGTGGGCTATGTTGGGAGCATTGGGCTGCGTTTTTCCAGAGCTTCTTTCCCGCAATGGCGTGAAGTTCGGAGAAGCGGTGTGGTTCAAGGCCGGTTCACAGATCTTCAGTGAAGGTGGGCTCGATTACTTAGGGAACCCGAGCTTGATCCACGCCCAAAGCATTCTAGCCATTTGGGCCTCCCAGGTGACCGACCCGATTTATCCAGGTGGGAGCTTTGACCCGTTGGGCCTTGCAGACGACCCAGAAGCCTTTGCAGAGCTGAAAGTGAAGGAGCTGAAGAATGGGAGATTGGCCATGTTCTCAATGTTTGGATTCTTCGTTCAAGCCATCGTGACAGGAAAGGGCCCACTTGAGAATCTTGCTGACCATCTTGCTGACCCAGTCAACAACAATGCTTGGGCTTATGCTACCAACTTTGTTCCTGGAAAA

Protein sequence

MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSASKSVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK

Homology

[Close]

BLAST of Lsi02G008790.1 vs. ExPASy Swiss-Prot
Match: P27495 (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum OX=4097 GN=CAB40 PE=2 SV=1)

HSP 1 Score: 462.6 bits (1189), Expect = 2.8e-129
Identity = 229/267 (85.77%), Postives = 240/267 (89.89%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSAS--KSVSSGSPWYGPDRVKYL 60
           MAASTMALSSPS AGKAVKL+PSS E+ GNG+V+MRK+AS  K+VSSGSPWYGPDRVKYL
Sbjct: 1   MAASTMALSSPSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ-------------- 180
           +RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA Q              
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 180

Query: 181 -----VTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
                V DP+YPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWAYATNFVPGK 247
           LENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of Lsi02G008790.1 vs. ExPASy Swiss-Prot
Match: P27493 (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum OX=4097 GN=CAB21 PE=2 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 3.6e-129
Identity = 225/265 (84.91%), Postives = 238/265 (89.81%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSASKSVSSGSPWYGPDRVKYLGP 60
           MAA+TMALSSPS AG+AVKL+PS+PE+ GNGRVSMRK+ +K V+S SPWYGPDRVKYLGP
Sbjct: 1   MAAATMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGP 60

Query: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+R
Sbjct: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ---------------- 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA Q                
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGP 180

Query: 181 ---VTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
              V DP+YPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 247
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Lsi02G008790.1 vs. ExPASy Swiss-Prot
Match: P09756 (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max OX=3847 GN=CAB3 PE=3 SV=1)

HSP 1 Score: 460.7 bits (1184), Expect = 1.0e-128
Identity = 231/264 (87.50%), Postives = 237/264 (89.77%), Query Frame = 0


Query: 2   AASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSASKSVSSGSPWYGPDRVKYLGPF 61
           AAS+MALSSPSLAGKAVKL PS+PE+   GRVSMRK+ +K VSSGSPWYGPDRVKYLGPF
Sbjct: 3   AASSMALSSPSLAGKAVKLGPSAPEV---GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPF 62

Query: 62  SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 121
           SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN
Sbjct: 63  SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 122

Query: 122 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ----------------- 181
           GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA+Q                 
Sbjct: 123 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPL 182

Query: 182 --VTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 241
             VTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 183 GEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 242

Query: 242 LADHLADPVNNNAWAYATNFVPGK 247
           LADHLA PVNNNAWAYATNFVPGK
Sbjct: 243 LADHLAGPVNNNAWAYATNFVPGK 263

[Close]

BLAST of Lsi02G008790.1 vs. ExPASy Swiss-Prot
Match: P08221 (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 2.6e-127
Identity = 221/255 (86.67%), Postives = 231/255 (90.59%), Query Frame = 0


Query: 11  PSLAGKAVKLTPSSPELLGNGRVSMRKSASKSVSSGSPWYGPDRVKYLGPFSGESPSYLT 70
           P+LAG+AVKL+P++PE+ GN + +MRK+ASKSVSSGSPWYGPDRVKYLGPFSGE PSYLT
Sbjct: 1   PTLAGQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLT 60

Query: 71  GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVW 130
           GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVW
Sbjct: 61  GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVW 120

Query: 131 FKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ-------------------VTDPIYP 190
           FKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA Q                   VTDPIYP
Sbjct: 121 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYP 180

Query: 191 GGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 247
           GGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV
Sbjct: 181 GGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 240

[Close]

BLAST of Lsi02G008790.1 vs. ExPASy Swiss-Prot
Match: P07370 (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB1B PE=3 SV=1)

HSP 1 Score: 455.3 bits (1170), Expect = 4.4e-127
Identity = 221/265 (83.40%), Postives = 236/265 (89.06%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSASKSVSSGSPWYGPDRVKYLGP 60
           MAA+TMALSSPS AG+AVKL+PS+ E+ GNGR++MRK+ +KS  S SPWYGPDRVKYLGP
Sbjct: 1   MAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGP 60

Query: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+R
Sbjct: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ---------------- 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA Q                
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180

Query: 181 ---VTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
              V DP+YPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 247
           NLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAFATNFVPGK 265

[Close]

BLAST of Lsi02G008790.1 vs. ExPASy TrEMBL
Match: A0A6J1CKT5 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012353 PE=3 SV=1)

HSP 1 Score: 484.6 bits (1246), Expect = 2.5e-133
Identity = 242/265 (91.32%), Postives = 243/265 (91.70%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSASKSVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRK  SKSVSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKFVSKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ---------------- 180
           NGVKFGEAVWFKAGSQIF+EGGLDYLGNPSLIHAQSILAIWASQ                
Sbjct: 121 NGVKFGEAVWFKAGSQIFNEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180

Query: 181 ---VTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
              VTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 247
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Lsi02G008790.1 vs. ExPASy TrEMBL
Match: A0A6J1KQK6 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111495586 PE=3 SV=1)

HSP 1 Score: 484.2 bits (1245), Expect = 3.3e-133
Identity = 242/265 (91.32%), Postives = 244/265 (92.08%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSASKSVSSGSPWYGPDRVKYLGP 60
           MAAS MALSSPSLAGKAVKLTPSS EL+GNGRVSMRKSA+KSVSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASAMALSSPSLAGKAVKLTPSSSELVGNGRVSMRKSAAKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ---------------- 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ                
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180

Query: 181 ---VTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
              VTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 247
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Lsi02G008790.1 vs. ExPASy TrEMBL
Match: A0A5D3DAQ5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00370 PE=3 SV=1)

HSP 1 Score: 483.4 bits (1243), Expect = 5.6e-133
Identity = 241/265 (90.94%), Postives = 243/265 (91.70%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSASKSVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKLTPSSPEL GN RV+MRKSA+KSVSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLTPSSPELFGNSRVNMRKSAAKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ---------------- 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ                
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180

Query: 181 ---VTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
              VTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 247
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Lsi02G008790.1 vs. ExPASy TrEMBL
Match: A0A1S3BAK6 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487605 PE=3 SV=1)

HSP 1 Score: 483.4 bits (1243), Expect = 5.6e-133
Identity = 241/265 (90.94%), Postives = 243/265 (91.70%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSASKSVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKLTPSSPEL GN RV+MRKSA+KSVSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLTPSSPELFGNSRVNMRKSAAKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ---------------- 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ                
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180

Query: 181 ---VTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
              VTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 247
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Lsi02G008790.1 vs. ExPASy TrEMBL
Match: A0A6J1CDN4 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111010725 PE=3 SV=1)

HSP 1 Score: 482.6 bits (1241), Expect = 9.5e-133
Identity = 241/264 (91.29%), Postives = 242/264 (91.67%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSASKSVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRK  SKSVSSGSPWYGPDRVKYLGP
Sbjct: 26  MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKFVSKSVSSGSPWYGPDRVKYLGP 85

Query: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 86  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 145

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ---------------- 180
           NGVKFGEAVWFKAGSQIF+EGGLDYLGNPSLIHAQSILAIWASQ                
Sbjct: 146 NGVKFGEAVWFKAGSQIFNEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 205

Query: 181 ---VTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
              VTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 206 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 265

Query: 241 NLADHLADPVNNNAWAYATNFVPG 246
           NLADHLADPVNNNAWAYATNFVPG
Sbjct: 266 NLADHLADPVNNNAWAYATNFVPG 289

[Close]

BLAST of Lsi02G008790.1 vs. NCBI nr
Match: XP_022142169.1 (chlorophyll a-b binding protein of LHCII type 1-like [Momordica charantia])

HSP 1 Score: 484.6 bits (1246), Expect = 5.2e-133
Identity = 242/265 (91.32%), Postives = 243/265 (91.70%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSASKSVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRK  SKSVSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKFVSKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ---------------- 180
           NGVKFGEAVWFKAGSQIF+EGGLDYLGNPSLIHAQSILAIWASQ                
Sbjct: 121 NGVKFGEAVWFKAGSQIFNEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180

Query: 181 ---VTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
              VTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 247
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Lsi02G008790.1 vs. NCBI nr
Match: XP_038877609.1 (chlorophyll a-b binding protein of LHCII type 1-like [Benincasa hispida])

HSP 1 Score: 484.6 bits (1246), Expect = 5.2e-133
Identity = 244/266 (91.73%), Postives = 245/266 (92.11%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGN-GRVSMRKSASKSVSSGSPWYGPDRVKYLG 60
           MAASTMALSSPSLAGKAVKLTPSSPELLGN GRVSMRKSASKS+SSGSPWYGPDRVKYLG
Sbjct: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGGRVSMRKSASKSISSGSPWYGPDRVKYLG 60

Query: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS
Sbjct: 61  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120

Query: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ--------------- 180
           RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ               
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGG 180

Query: 181 ----VTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 240
               VTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 181 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 240

Query: 241 ENLADHLADPVNNNAWAYATNFVPGK 247
           ENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 ENLADHLADPVNNNAWAYATNFVPGK 266

[Close]

BLAST of Lsi02G008790.1 vs. NCBI nr
Match: XP_023001458.1 (chlorophyll a-b binding protein of LHCII type 1-like [Cucurbita maxima])

HSP 1 Score: 484.2 bits (1245), Expect = 6.8e-133
Identity = 242/265 (91.32%), Postives = 244/265 (92.08%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSASKSVSSGSPWYGPDRVKYLGP 60
           MAAS MALSSPSLAGKAVKLTPSS EL+GNGRVSMRKSA+KSVSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASAMALSSPSLAGKAVKLTPSSSELVGNGRVSMRKSAAKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ---------------- 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ                
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180

Query: 181 ---VTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
              VTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 247
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Lsi02G008790.1 vs. NCBI nr
Match: XP_008444193.1 (PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo] >KAA0053968.1 chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo var. makuwa] >TYK20653.1 chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 483.4 bits (1243), Expect = 1.2e-132
Identity = 241/265 (90.94%), Postives = 243/265 (91.70%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSASKSVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKLTPSSPEL GN RV+MRKSA+KSVSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLTPSSPELFGNSRVNMRKSAAKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ---------------- 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ                
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180

Query: 181 ---VTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
              VTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 247
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Lsi02G008790.1 vs. NCBI nr
Match: XP_022139935.1 (chlorophyll a-b binding protein 3, chloroplastic-like [Momordica charantia])

HSP 1 Score: 482.6 bits (1241), Expect = 2.0e-132
Identity = 241/264 (91.29%), Postives = 242/264 (91.67%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSASKSVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRK  SKSVSSGSPWYGPDRVKYLGP
Sbjct: 26  MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKFVSKSVSSGSPWYGPDRVKYLGP 85

Query: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 86  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 145

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ---------------- 180
           NGVKFGEAVWFKAGSQIF+EGGLDYLGNPSLIHAQSILAIWASQ                
Sbjct: 146 NGVKFGEAVWFKAGSQIFNEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 205

Query: 181 ---VTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
              VTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 206 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 265

Query: 241 NLADHLADPVNNNAWAYATNFVPG 246
           NLADHLADPVNNNAWAYATNFVPG
Sbjct: 266 NLADHLADPVNNNAWAYATNFVPG 289

[Close]

BLAST of Lsi02G008790.1 vs. TAIR 10
Match: AT1G29930.1 (chlorophyll A/B binding protein 1 )

HSP 1 Score: 443.0 bits (1138), Expect = 1.6e-124
Identity = 219/267 (82.02%), Postives = 236/267 (88.39%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSASKSVS-SGSPWYGPDRVKYLG 60
           MAASTMALSSP+ AGKAVKL+P++ E+LG+GRV+MRK+ +K    SGSPWYG DRVKYLG
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSGESPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120

Query: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQV-------------- 180
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSL+HAQSILAIWA+QV              
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGN 180

Query: 181 ------TDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
                  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWAYATNFVPGK 247
           +ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 IENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of Lsi02G008790.1 vs. TAIR 10
Match: AT2G34430.1 (light-harvesting chlorophyll-protein complex II subunit B1 )

HSP 1 Score: 441.8 bits (1135), Expect = 3.6e-124
Identity = 216/266 (81.20%), Postives = 233/266 (87.59%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSASKSVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSP+L GKAVKL+P++ E+ G GR++MRK++  +  SGSPWYG DRVKYLGP
Sbjct: 1   MAASTMALSSPALTGKAVKLSPAASEVFGTGRITMRKASKPTGPSGSPWYGSDRVKYLGP 60

Query: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+R
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLAR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQV--------------- 180
           NGVKFGEAVWFKAGSQIFS+GGLDYLGNPSL+HAQSILAIWA+QV               
Sbjct: 121 NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDG 180

Query: 181 -----TDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 240
                 D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 181 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 240

Query: 241 ENLADHLADPVNNNAWAYATNFVPGK 247
           ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 ENLADHLADPVNNNAWAFATNFVPGK 266

[Close]

BLAST of Lsi02G008790.1 vs. TAIR 10
Match: AT1G29910.1 (chlorophyll A/B binding protein 3 )

HSP 1 Score: 441.0 bits (1133), Expect = 6.1e-124
Identity = 218/267 (81.65%), Postives = 235/267 (88.01%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSASKSVS-SGSPWYGPDRVKYLG 60
           MAASTMALSSP+ AGKAV L+P++ E+LG+GRV+MRK+ +K    SGSPWYG DRVKYLG
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSGESPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120

Query: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQV-------------- 180
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSL+HAQSILAIWA+QV              
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGN 180

Query: 181 ------TDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
                  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWAYATNFVPGK 247
           +ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 IENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of Lsi02G008790.1 vs. TAIR 10
Match: AT1G29920.1 (chlorophyll A/B-binding protein 2 )

HSP 1 Score: 441.0 bits (1133), Expect = 6.1e-124
Identity = 218/267 (81.65%), Postives = 235/267 (88.01%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSASKSVS-SGSPWYGPDRVKYLG 60
           MAASTMALSSP+ AGKAV L+P++ E+LG+GRV+MRK+ +K    SGSPWYG DRVKYLG
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSGESPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120

Query: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQV-------------- 180
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSL+HAQSILAIWA+QV              
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGN 180

Query: 181 ------TDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
                  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWAYATNFVPGK 247
           +ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 IENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of Lsi02G008790.1 vs. TAIR 10
Match: AT2G34420.1 (photosystem II light harvesting complex gene B1B2 )

HSP 1 Score: 433.0 bits (1112), Expect = 1.7e-121
Identity = 216/267 (80.90%), Postives = 233/267 (87.27%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSASKSVS-SGSPWYGPDRVKYLG 60
           MA+STMALSSP+ AGKAVK  P++ ++LG+GRV+MRK+ +K    SGSPWYG DRVKYLG
Sbjct: 1   MASSTMALSSPAFAGKAVK--PAASDVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 61  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120

Query: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQV-------------- 180
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSL+HAQSILAIWA+QV              
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGD 180

Query: 181 ------TDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
                  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWAYATNFVPGK 247
           LENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAFATNFVPGK 265

The following BLAST results are available for this feature:

BLAST of Lsi02G008790.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27495	2.8e-129	85.77	Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum OX=4097 G...	[more]
P27493	3.6e-129	84.91	Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum OX=4097 G...	[more]
P09756	1.0e-128	87.50	Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max OX=3847 GN=CAB3 ...	[more]
P08221	2.6e-127	86.67	Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cuc...	[more]
P07370	4.4e-127	83.40	Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum OX=408...	[more]

BLAST of Lsi02G008790.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CKT5	2.5e-133	91.32	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1KQK6	3.3e-133	91.32	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A5D3DAQ5	5.6e-133	90.94	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BAK6	5.6e-133	90.94	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1CDN4	9.5e-133	91.29	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]

BLAST of Lsi02G008790.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142169.1	5.2e-133	91.32	chlorophyll a-b binding protein of LHCII type 1-like [Momordica charantia]	[more]
XP_038877609.1	5.2e-133	91.73	chlorophyll a-b binding protein of LHCII type 1-like [Benincasa hispida]	[more]
XP_023001458.1	6.8e-133	91.32	chlorophyll a-b binding protein of LHCII type 1-like [Cucurbita maxima]	[more]
XP_008444193.1	1.2e-132	90.94	PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo] >...	[more]
XP_022139935.1	2.0e-132	91.29	chlorophyll a-b binding protein 3, chloroplastic-like [Momordica charantia]	[more]

BLAST of Lsi02G008790.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29930.1	1.6e-124	82.02	chlorophyll A/B binding protein 1	[more]
AT2G34430.1	3.6e-124	81.20	light-harvesting chlorophyll-protein complex II subunit B1	[more]
AT1G29910.1	6.1e-124	81.65	chlorophyll A/B binding protein 3	[more]
AT1G29920.1	6.1e-124	81.65	chlorophyll A/B-binding protein 2	[more]
AT2G34420.1	1.7e-121	80.90	photosystem II light harvesting complex gene B1B2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 56..239 e-value: 1.1E-78 score: 265.8
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 66..212 e-value: 4.5E-43 score: 147.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..47
None	No IPR available	PANTHER	PTHR21649:SF88	CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC	coord: 1..165
None	No IPR available	PANTHER	PTHR21649:SF88	CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC	coord: 164..246
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 48..243
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 164..246 coord: 1..165

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi02G008790	Lsi02G008790	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi02G008790.1.exon.3	Lsi02G008790.1.exon.3	exon
Lsi02G008790.1.exon.2	Lsi02G008790.1.exon.2	exon
Lsi02G008790.1.exon.1	Lsi02G008790.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi02G008790.1.CDS.3	Lsi02G008790.1.CDS.3	CDS
Lsi02G008790.1.CDS.2	Lsi02G008790.1.CDS.2	CDS
Lsi02G008790.1.CDS.1	Lsi02G008790.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi02G008790.1.five_prime_UTR.1	Lsi02G008790.1.five_prime_UTR.1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi02G008790.1	Lsi02G008790.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0016020	membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding