Lsi01G003950.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G003950.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr01: 3400117 .. 3401514 (-)
Sequence length372
RNA-Seq ExpressionLsi01G003950.1
SyntenyLsi01G003950.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGGTAAAATAATATGTAATTTTGATTTTTTTTTATTACGAGTCATTTGTATGTATTTATTGTTAAATAGAGCATCAGAAGTTGTCTTCAGAGAACAAATATTGTTGAACACCATTTTATTGTTCGTTTCTTAGATTTTAGTTCACAGTAAACTTCGCTGCTAAACCTTATATATAAGAGACTGTCAAGATAGTTTCATTTCCTTCTGGTAAGGATAAAGTTCTTGACATTACAACAACTCCATTTCCATCTTTTTTCAAGGTAAGTATTGTAATTCTTAGCCTCACCGTCATTGCGGGGATCCATGGTGCATCAAGAAAAGCTTCTCGCCATCTCTTTAGTTTTGATGTCTGTTCGAATTGTCTTGTACAAAAATTTACAGAGTAGCCTGGAAATGAGATTTTTACTTCTGTTGGGTCAGTGTATATTATATTGGAGGGCATTTGTTATGCTGATGATTTATGAACTTTGTTGTTGAATATAATATACAATTAAAAAGAACATATTATAACAATTTATGATTGATTGAAATTTCTCATTACATATATTTATAATTATTTTTTGGACTATTTTCTCCCACAACTTTAAAATATAAGTTTTTATGTCTCAACTTTTCATAATATCCATGGAAATTGGGTTACTAATCTTTAGTTATATATGTTTTGAAATAAACAAATAAATAAATAGTTGTTTTATGTGTTAACAATTCATTTTTTTTCCTTTTGTTAAAACACACATTTCATTTAAAAAAAAAAAAAAAAACGATGAACAACTTAATCAATAAAAAATATTTCATTTAAGAGTTGTTTGAATAAAAAAAATTTACAATTCAAATAACTCGTTTGAGTTTAAAAAGTATTTTACTATCTAATTAGACTCATGAACACTCATATTCAAAATTAGGTAAGGGTGAATATTTAATTAGAAAATTCAATATATGAATAATGAAATTGAAAATAACAATTTTTTTAAGAACTAAAATTTGGGATAATAAGTTGCAAGCTATCCTTTAATTATTATTATTTTTAGCATAACTATTTACTGCCACCATTTTCCCGGAGAGATATAAAACACACTTGCAAATTGCTCTTGCAGTAACCGTTTTGGTTTTATAATTACATACATTACAATTAGGTCAAAATTGTTGACCGCATTCCCTTCCCATTCATTATTGACCGCTGGTGCCAGTCAAAACGTCTAGATACAGTGCTCACTATCAGTCCTGTAGCGATGGCGGCAACCAAATCCCTCCCCCATCCCTTTCCAAATTTCTCGTTCCTCCTCTAATGATCGGAGCAATCCACCGCCCTTCCGTTTCCAAATTTCTCGTTTCTCCTCTAATGGCGAAGTCTTGCGTACCAGCCAGTTCTCCCGCATTGAATCTCAAACGCTAA

mRNA sequence

ATGGCTGAAGTTGTCTTCAGAGAACAAATATTGTTGAACACCATTTTATTGTTCGTAAGTATTGTAATTCTTAGCCTCACCGTCATTGCGGGGATCCATGGTGCATCAAGAAAAGCTTCTCGCCATCTCTTTAGTTTTGATCATAACTATTTACTGCCACCATTTTCCCGGAGAGATATAAAACACACTTGCAAATTGCTCTTGCACGATGGCGGCAACCAAATCCCTCCCCCATCCCTTTCCAAATTTCTCGTTCCTCCTCTAATGATCGGAGCAATCCACCGCCCTTCCGTTTCCAAATTTCTCGTTTCTCCTCTAATGGCGAAGTCTTGCGTACCAGCCAGTTCTCCCGCATTGAATCTCAAACGCTAA

Coding sequence (CDS)

ATGGCTGAAGTTGTCTTCAGAGAACAAATATTGTTGAACACCATTTTATTGTTCGTAAGTATTGTAATTCTTAGCCTCACCGTCATTGCGGGGATCCATGGTGCATCAAGAAAAGCTTCTCGCCATCTCTTTAGTTTTGATCATAACTATTTACTGCCACCATTTTCCCGGAGAGATATAAAACACACTTGCAAATTGCTCTTGCACGATGGCGGCAACCAAATCCCTCCCCCATCCCTTTCCAAATTTCTCGTTCCTCCTCTAATGATCGGAGCAATCCACCGCCCTTCCGTTTCCAAATTTCTCGTTTCTCCTCTAATGGCGAAGTCTTGCGTACCAGCCAGTTCTCCCGCATTGAATCTCAAACGCTAA

Protein sequence

MAEVVFREQILLNTILLFVSIVILSLTVIAGIHGASRKASRHLFSFDHNYLLPPFSRRDIKHTCKLLLHDGGNQIPPPSLSKFLVPPLMIGAIHRPSVSKFLVSPLMAKSCVPASSPALNLKR
Homology
The following BLAST results are available for this feature:
BLAST of Lsi01G003950.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi01G003950.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi01G003950.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi01G003950.1 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi01G003950Lsi01G003950gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi01G003950.1.exon.5Lsi01G003950.1.exon.5exon
Lsi01G003950.1.exon.4Lsi01G003950.1.exon.4exon
Lsi01G003950.1.exon.3Lsi01G003950.1.exon.3exon
Lsi01G003950.1.exon.2Lsi01G003950.1.exon.2exon
Lsi01G003950.1.exon.1Lsi01G003950.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi01G003950.1.CDS.5Lsi01G003950.1.CDS.5CDS
Lsi01G003950.1.CDS.4Lsi01G003950.1.CDS.4CDS
Lsi01G003950.1.CDS.3Lsi01G003950.1.CDS.3CDS
Lsi01G003950.1.CDS.2Lsi01G003950.1.CDS.2CDS
Lsi01G003950.1.CDS.1Lsi01G003950.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi01G003950.1Lsi01G003950.1-proteinpolypeptide