Lsi01G001440.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G001440.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	katanin p60 ATPase-containing subunit A-like 2 isoform X2
Location	chr01: 1492846 .. 1494546 (-)
Sequence length	755
RNA-Seq Expression	Lsi01G001440.1
Synteny	Lsi01G001440.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAATATCCCCAAGTGATTCTCCTTTGACCATGGTAAAAAAGATACTTGTGCCTCTGCCAGAACCAGAAGCTAGAAGAGCTATGTTTGAAGAACTTCTTCCTCCTCAACCCGGAAATGAGGAACTTCCTTATGATATATTGATGCAAAGAACAGAAGGCTATTCAGGTTCTGATATTAGATTAGTGTGCAAAGAGGCTGCTATGCAGCCACTGCGCCGCCTAATGGCCCAACTCGAGGAACAGCAAAAAGAGCTGCCTGAAGATCAACAGGAAGTAGTGCCTGAAGAAGGTATGGAATTTTTTAAACGGATCCTTTTTTCTCCCCTCTTTCGTTTGAAAGTATGGATTTATTCTCTCAAAAATTCCCTTCTATAGACTTCTATAGTAACCTTGATATTCTCCTCGAATCTATGGGGAAGCCTTCCAAGTCTTTTGCTCCTGCAATCTCTATTTTTAGAATTGTCAGTATCCACAAGAAGGATTAGATCTGTAATCTAGAAATTAAAAATCTAATGAAATACATTTAAGCACCATGGTCTCAAACATATGGGTGATCAGTCTCTCTTCTCTGTACCATCCTGTAAAAAGATCTGACATAATAACTCTTCATGACCGCAGAGTTGCCCAAAGTTGGACCAATCACAGCCTCCGACATAGAGATTGCCTTACGAAACACGCGGCCATCAGCTCATTTGGATGCTCCCCGCTATGAAAAATTCAATGCCGACTATGGAAGTCAATTACGGCACTGAAGGTACACAAGTGCCCCACTTATCCCTCTCAGCAGCCTTCTTGTATGTGTATGCTAGTTTGGTGTGTTGTACTACAAAAAAAAAAAAAAAAAGGCATCAAATTGTCTCCACATAACAATTTATAACTTACTGGTGCCCCAAAAGATTAAGTGTATCATCAACATTTGGCTCTATGAAATTCGGTGCTCATTTCAAGGTCTAGTTATCATTGATTTGTTCATAGATTAGAGAAATGAGAACAAATTTATCAGGACTATTTATTCTCGAAGGCTGTGTTTAGTATTAGTAGATGTGAGACTTATTATGGACTATTTTTTTTTAATTGGTGAAATTGTTCTTCATATCTGATAGATGTGAGAGTTTCACGTCAAATCAAAATGCAGAACTGATGTGACAAGTAACACTATAGTGGATAGATATGAGATTTGATAGATAAAGCCTTGTATGAGGAAGTAGCATTATCATGAACATATCTTACCAATAACAATAAGATAGAAAGATAAGGATTGTGATGACAAATTTAAGTTCCTTAAGTACAAAGAAGTGGTCTATTTCTGGTCATCTTCATGATGTTGCTGCTGTGACTATAAGGGAAACTGTGATGTTTCTTGATTTCCAGGTATTAGTGTGTTCTGATCTCAGGCTGCTTTTGGACATCAGCTCTGATTTGGAAATATTCTAGTTTTGAACCAGGTGGAAGGTGAGTTGGAAGTTTGACTAAGACTGTGTGTTGACATGATATATGATGTTAAAGTGAAATCAATTGTTAATACTGAGTAAAAAGTACTATAACTATTTAGATATGTTTTTTAAAGGTTAAATTGCAAATTTGGACCTTATAGTTTGAAAAAAGTTAGAATTTAGTCCATATAGTTTATAATTAGAATTTAATCCTATAGTTTGATAAAACCCTCGTAGATAGTCCTTACAGTAGGGAAGAATGAGC

mRNA sequence

ATGATAATATCCCCAAGTGATTCTCCTTTGACCATGGTAAAAAAGATACTTGTGCCTCTGCCAGAACCAGAAGCTAGAAGAGCTATGTTTGAAGAACTTCTTCCTCCTCAACCCGGAAATGAGGAACTTCCTTATGATATATTGATGCAAAGAACAGAAGGCTATTCAGGTTCTGATATTAGATTAGTGTGCAAAGAGGCTGCTATGCAGCCACTGCGCCGCCTAATGGCCCAACTCGAGGAACAGCAAAAAGAGCTGCCTGAAGATCAACAGGAAGTAGTGCCTGAAGAAGAGTTGCCCAAAGTTGGACCAATCACAGCCTCCGACATAGAGATTGCCTTACGAAACACGCGGCCATCAGCTCATTTGGATGCTCCCCGCTATGAAAAATTCAATGCCGACTATGGAAGTCAATTACGGCACTGAAGGTATTAGTGTGTTCTGATCTCAGGCTGCTTTTGGACATCAGCTCTGATTTGGAAATATTCTAGTTTTGAACCAGGTGGAAGGTGAGTTGGAAGTTTGACTAAGACTGTGTGTTGACATGATATATGATGTTAAAGTGAAATCAATTGTTAATACTGAGTAAAAAGTACTATAACTATTTAGATATGTTTTTTAAAGGTTAAATTGCAAATTTGGACCTTATAGTTTGAAAAAAGTTAGAATTTAGTCCATATAGTTTATAATTAGAATTTAATCCTATAGTTTGATAAAACCCTCGTAGATAGTCCTTACAGTAGGGAAGAATGAGC

Coding sequence (CDS)

ATGATAATATCCCCAAGTGATTCTCCTTTGACCATGGTAAAAAAGATACTTGTGCCTCTGCCAGAACCAGAAGCTAGAAGAGCTATGTTTGAAGAACTTCTTCCTCCTCAACCCGGAAATGAGGAACTTCCTTATGATATATTGATGCAAAGAACAGAAGGCTATTCAGGTTCTGATATTAGATTAGTGTGCAAAGAGGCTGCTATGCAGCCACTGCGCCGCCTAATGGCCCAACTCGAGGAACAGCAAAAAGAGCTGCCTGAAGATCAACAGGAAGTAGTGCCTGAAGAAGAGTTGCCCAAAGTTGGACCAATCACAGCCTCCGACATAGAGATTGCCTTACGAAACACGCGGCCATCAGCTCATTTGGATGCTCCCCGCTATGAAAAATTCAATGCCGACTATGGAAGTCAATTACGGCACTGA

Protein sequence

MIISPSDSPLTMVKKILVPLPEPEARRAMFEELLPPQPGNEELPYDILMQRTEGYSGSDIRLVCKEAAMQPLRRLMAQLEEQQKELPEDQQEVVPEEELPKVGPITASDIEIALRNTRPSAHLDAPRYEKFNADYGSQLRH

Homology

[Close]

BLAST of Lsi01G001440.1 vs. ExPASy Swiss-Prot
Match: Q8IYT4 (Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens OX=9606 GN=KATNAL2 PE=1 SV=3)

HSP 1 Score: 82.4 bits (202), Expect = 4.4e-15
Identity = 56/133 (42.11%), Postives = 74/133 (55.64%), Query Frame = 0


Query: 14  KKILVPLPEPEARRAMFEELLPPQPGNE------ELPYDILMQRTEGYSGSDIRLVCKEA 73
           K+ILV LP  EAR+AM    LPP   +       EL Y +L Q TEGYSGSDI+LVC+EA
Sbjct: 416 KRILVDLPSREARQAMIYHWLPPVSKSRALELHTELEYSVLSQETEGYSGSDIKLVCREA 475

Query: 74  AMQPLRRLMAQLEEQQKE---LPEDQQEVVPEEELPKVGPITASDIEIALRNTRPSAHLD 133
           AM+P+R++   LE  Q E   LP  Q ++V           T +D    L +T+PSA   
Sbjct: 476 AMRPVRKIFDALENHQSESSDLPRIQLDIV-----------TTADFLDVLTHTKPSAKNL 535

Query: 134 APRYEKFNADYGS 138
           A RY  +  ++ S
Sbjct: 536 AQRYSDWQREFES 537

[Close]

BLAST of Lsi01G001440.1 vs. ExPASy Swiss-Prot
Match: Q3B8D5 (Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus laevis OX=8355 GN=katnal2 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.2e-14
Identity = 52/132 (39.39%), Postives = 73/132 (55.30%), Query Frame = 0


Query: 14  KKILVPLPEPEARRAMFEELLPPQPGNE------ELPYDILMQRTEGYSGSDIRLVCKEA 73
           K+ILV LP  EAR+AM +  LPP   +       +L Y  L + T+GYSGSDIRLVCKEA
Sbjct: 383 KRILVDLPSKEARQAMIQHWLPPISNSSGVELRMDLDYSTLGEETDGYSGSDIRLVCKEA 442

Query: 74  AMQPLRRLMAQLEEQQKELPEDQQEVVPEEELPKVG--PITASDIEIALRNTRPSAHLDA 133
           AM+P+R++   LE    E           ++LP +    +T SD    L +T+PSA   A
Sbjct: 443 AMRPVRKIFDALENHHSE----------HKKLPVISLETVTTSDFSEVLAHTKPSAKSLA 502

Query: 134 PRYEKFNADYGS 138
            +Y  +  ++ S
Sbjct: 503 EKYSAWQNEFES 504

[Close]

BLAST of Lsi01G001440.1 vs. ExPASy Swiss-Prot
Match: Q9D3R6 (Katanin p60 ATPase-containing subunit A-like 2 OS=Mus musculus OX=10090 GN=Katnal2 PE=2 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 2.9e-14
Identity = 55/132 (41.67%), Postives = 72/132 (54.55%), Query Frame = 0


Query: 14  KKILVPLPEPEARRAMFEELLPPQPGNE------ELPYDILMQRTEGYSGSDIRLVCKEA 73
           K+ILV LP  EAR+AM    LPP   N       +L Y +L Q TEGYSGSDI+LVC+EA
Sbjct: 417 KRILVDLPSQEARQAMIYHWLPPVSKNHALELHTQLEYSVLSQETEGYSGSDIKLVCREA 476

Query: 74  AMQPLRRLMAQLEEQQKELPEDQQEVVPEEELP--KVGPITASDIEIALRNTRPSAHLDA 133
           AM+P+R++ + LE  Q E             LP  ++  +T  D    L +T+PSA    
Sbjct: 477 AMRPVRKIFSVLENNQSE----------SNNLPGIQLDTVTTQDFLDVLAHTKPSAKNLT 536

[Close]

BLAST of Lsi01G001440.1 vs. ExPASy Swiss-Prot
Match: A0JMA9 (Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis OX=8364 GN=katnal2 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-13
Identity = 52/132 (39.39%), Postives = 71/132 (53.79%), Query Frame = 0


Query: 14  KKILVPLPEPEARRAMFEELLPPQPGNE------ELPYDILMQRTEGYSGSDIRLVCKEA 73
           K+ILV LP  EAR+AM +  LPP   +       +L Y  L   T+GYSGSDIRLVCKEA
Sbjct: 420 KRILVDLPSKEARQAMIQHWLPPVSNSSGVELRTDLDYSTLGAETDGYSGSDIRLVCKEA 479

Query: 74  AMQPLRRLMAQLEEQQKELPEDQQEVVPEEELPKVG--PITASDIEIALRNTRPSAHLDA 133
           AM+P+R++   LE    E           + LP +    +T SD    L +T+PSA   A
Sbjct: 480 AMRPVRKIFDALENHHSE----------HKNLPVISLDTVTTSDFLEVLAHTKPSAKSLA 539

Query: 134 PRYEKFNADYGS 138
            +Y  +  ++ S
Sbjct: 540 EKYAAWQKEFES 541

[Close]

BLAST of Lsi01G001440.1 vs. ExPASy Swiss-Prot
Match: P39955 (Protein SAP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SAP1 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.1e-09
Identity = 45/127 (35.43%), Postives = 68/127 (53.54%), Query Frame = 0


Query: 13  VKKILVPLPEPEARRAMFEELLPPQPGN-EELPYDILMQRTEGYSGSDIRLVCKEAAMQP 72
           V++  +PLPE + R   F++LL  Q     E  +D L++ TEGYSGSDI  + K+AAM P
Sbjct: 783 VRRQYIPLPEDQTRHVQFKKLLSHQKHTLTESDFDELVKITEGYSGSDITSLAKDAAMGP 842

Query: 73  LRRLMAQLEEQQKELPEDQQEVVPEEELPKVGPITASDIEIALRNTRPSAHLDA-PRYEK 132
           LR L  +L E ++E+               + PI   D + +L   +PS   D   +YEK
Sbjct: 843 LRDLGDKLLETEREM---------------IRPIGLVDFKNSLVYIKPSVSQDGLVKYEK 894

Query: 133 FNADYGS 138
           + + +GS
Sbjct: 903 WASQFGS 894

[Close]

BLAST of Lsi01G001440.1 vs. ExPASy TrEMBL
Match: A0A0A0KKN3 (AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G523400 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.0e-58
Identity = 118/127 (92.91%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 14  KKILVPLPEPEARRAMFEELLPPQPGNEELPYDILMQRTEGYSGSDIRLVCKEAAMQPLR 73
           K+ILVPLPEPEARRAMFEELLPPQPG+E+LPYDILM+RTEGYSGSDIRLVCKEAAMQPLR
Sbjct: 284 KRILVPLPEPEARRAMFEELLPPQPGDEDLPYDILMERTEGYSGSDIRLVCKEAAMQPLR 343

Query: 74  RLMAQLEEQQKELPEDQQEVVPEEELPKVGPITASDIEIALRNTRPSAHLDAPRYEKFNA 133
           RLMAQLEEQQ ELPEDQQ VVPEEELPK+GPITASDI+ ALRNTRPSAHLDAPRYEKFNA
Sbjct: 344 RLMAQLEEQQNELPEDQQGVVPEEELPKIGPITASDIQTALRNTRPSAHLDAPRYEKFNA 403

Query: 134 DYGSQLR 141
           DYGSQLR
Sbjct: 404 DYGSQLR 410

[Close]

BLAST of Lsi01G001440.1 vs. ExPASy TrEMBL
Match: A0A1S3AZU5 (katanin p60 ATPase-containing subunit A-like 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484365 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.7e-57
Identity = 117/128 (91.41%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 14  KKILVPLPEPEARRAMFEELLPPQPGNEELPYDILMQRTEGYSGSDIRLVCKEAAMQPLR 73
           K+ILVPLPEPEARRAMFEELLPPQPG+E+LPYDILM+RTEGYSGSDIRLVCKEAAMQPLR
Sbjct: 297 KRILVPLPEPEARRAMFEELLPPQPGDEDLPYDILMERTEGYSGSDIRLVCKEAAMQPLR 356

Query: 74  RLMAQLEEQQKELPEDQQEVVPEEELPKVGPITASDIEIALRNTRPSAHLDAPRYEKFNA 133
           RLMAQLEEQQ ELPEDQQ VVPEEELPK+GPITA DIE AL NTRPSAHLDAPRYEKFNA
Sbjct: 357 RLMAQLEEQQNELPEDQQGVVPEEELPKIGPITALDIETALLNTRPSAHLDAPRYEKFNA 416

Query: 134 DYGSQLRH 142
           DYGS LRH
Sbjct: 417 DYGSHLRH 424

[Close]

BLAST of Lsi01G001440.1 vs. ExPASy TrEMBL
Match: A0A1S3AZW4 (katanin p60 ATPase-containing subunit A-like 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484365 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.7e-57
Identity = 117/128 (91.41%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 14  KKILVPLPEPEARRAMFEELLPPQPGNEELPYDILMQRTEGYSGSDIRLVCKEAAMQPLR 73
           K+ILVPLPEPEARRAMFEELLPPQPG+E+LPYDILM+RTEGYSGSDIRLVCKEAAMQPLR
Sbjct: 284 KRILVPLPEPEARRAMFEELLPPQPGDEDLPYDILMERTEGYSGSDIRLVCKEAAMQPLR 343

Query: 74  RLMAQLEEQQKELPEDQQEVVPEEELPKVGPITASDIEIALRNTRPSAHLDAPRYEKFNA 133
           RLMAQLEEQQ ELPEDQQ VVPEEELPK+GPITA DIE AL NTRPSAHLDAPRYEKFNA
Sbjct: 344 RLMAQLEEQQNELPEDQQGVVPEEELPKIGPITALDIETALLNTRPSAHLDAPRYEKFNA 403

Query: 134 DYGSQLRH 142
           DYGS LRH
Sbjct: 404 DYGSHLRH 411

[Close]

BLAST of Lsi01G001440.1 vs. ExPASy TrEMBL
Match: A0A1S3AYT2 (katanin p60 ATPase-containing subunit A-like 2 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484365 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.7e-57
Identity = 117/128 (91.41%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 14  KKILVPLPEPEARRAMFEELLPPQPGNEELPYDILMQRTEGYSGSDIRLVCKEAAMQPLR 73
           K+ILVPLPEPEARRAMFEELLPPQPG+E+LPYDILM+RTEGYSGSDIRLVCKEAAMQPLR
Sbjct: 276 KRILVPLPEPEARRAMFEELLPPQPGDEDLPYDILMERTEGYSGSDIRLVCKEAAMQPLR 335

Query: 74  RLMAQLEEQQKELPEDQQEVVPEEELPKVGPITASDIEIALRNTRPSAHLDAPRYEKFNA 133
           RLMAQLEEQQ ELPEDQQ VVPEEELPK+GPITA DIE AL NTRPSAHLDAPRYEKFNA
Sbjct: 336 RLMAQLEEQQNELPEDQQGVVPEEELPKIGPITALDIETALLNTRPSAHLDAPRYEKFNA 395

Query: 134 DYGSQLRH 142
           DYGS LRH
Sbjct: 396 DYGSHLRH 403

[Close]

BLAST of Lsi01G001440.1 vs. ExPASy TrEMBL
Match: A0A6J1EJI5 (katanin p60 ATPase-containing subunit A-like 2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111433178 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 8.3e-57
Identity = 119/128 (92.97%), Postives = 124/128 (96.88%), Query Frame = 0


Query: 14  KKILVPLPEPEARRAMFEELLPPQPGNEELPYDILMQRTEGYSGSDIRLVCKEAAMQPLR 73
           K+ILVPLPEPEAR+AMFEELL PQ G EELPYDILM+RTEGYSGSDIRLVCKEAAMQPLR
Sbjct: 286 KRILVPLPEPEARKAMFEELL-PQSGVEELPYDILMERTEGYSGSDIRLVCKEAAMQPLR 345

Query: 74  RLMAQLEEQQKELPEDQQEVVPEEELPKVGPITASDIEIALRNTRPSAHLDAPRYEKFNA 133
           RLMAQLEEQQKELPE+QQ VVPEEELPK+GPITASDIEIALRNTRPSAHLDAPRYEKFNA
Sbjct: 346 RLMAQLEEQQKELPEEQQGVVPEEELPKIGPITASDIEIALRNTRPSAHLDAPRYEKFNA 405

Query: 134 DYGSQLRH 142
           DYGSQLRH
Sbjct: 406 DYGSQLRH 412

[Close]

BLAST of Lsi01G001440.1 vs. NCBI nr
Match: XP_038883745.1 (katanin p60 ATPase-containing subunit A-like 2 isoform X2 [Benincasa hispida])

HSP 1 Score: 243.0 bits (619), Expect = 1.5e-60
Identity = 123/128 (96.09%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 14  KKILVPLPEPEARRAMFEELLPPQPGNEELPYDILMQRTEGYSGSDIRLVCKEAAMQPLR 73
           K+ILVPLPEPEARRAMFEELLPPQPGNEELPYDILM+RTEGYSGSDIRLVCKEAAMQPLR
Sbjct: 297 KRILVPLPEPEARRAMFEELLPPQPGNEELPYDILMERTEGYSGSDIRLVCKEAAMQPLR 356

Query: 74  RLMAQLEEQQKELPEDQQEVVPEEELPKVGPITASDIEIALRNTRPSAHLDAPRYEKFNA 133
           RLMAQLEEQQK LPEDQQ VVPEEELPK+GPITASDIEIALRNTRPSAHLDAPRYEKFNA
Sbjct: 357 RLMAQLEEQQKGLPEDQQGVVPEEELPKIGPITASDIEIALRNTRPSAHLDAPRYEKFNA 416

Query: 134 DYGSQLRH 142
           DYGSQLRH
Sbjct: 417 DYGSQLRH 424

[Close]

BLAST of Lsi01G001440.1 vs. NCBI nr
Match: XP_038883747.1 (katanin p60 ATPase-containing subunit A-like 2 isoform X4 [Benincasa hispida])

HSP 1 Score: 243.0 bits (619), Expect = 1.5e-60
Identity = 123/128 (96.09%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 14  KKILVPLPEPEARRAMFEELLPPQPGNEELPYDILMQRTEGYSGSDIRLVCKEAAMQPLR 73
           K+ILVPLPEPEARRAMFEELLPPQPGNEELPYDILM+RTEGYSGSDIRLVCKEAAMQPLR
Sbjct: 277 KRILVPLPEPEARRAMFEELLPPQPGNEELPYDILMERTEGYSGSDIRLVCKEAAMQPLR 336

Query: 74  RLMAQLEEQQKELPEDQQEVVPEEELPKVGPITASDIEIALRNTRPSAHLDAPRYEKFNA 133
           RLMAQLEEQQK LPEDQQ VVPEEELPK+GPITASDIEIALRNTRPSAHLDAPRYEKFNA
Sbjct: 337 RLMAQLEEQQKGLPEDQQGVVPEEELPKIGPITASDIEIALRNTRPSAHLDAPRYEKFNA 396

Query: 134 DYGSQLRH 142
           DYGSQLRH
Sbjct: 397 DYGSQLRH 404

[Close]

BLAST of Lsi01G001440.1 vs. NCBI nr
Match: XP_038883746.1 (katanin p60 ATPase-containing subunit A-like 2 isoform X3 [Benincasa hispida])

HSP 1 Score: 243.0 bits (619), Expect = 1.5e-60
Identity = 123/128 (96.09%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 14  KKILVPLPEPEARRAMFEELLPPQPGNEELPYDILMQRTEGYSGSDIRLVCKEAAMQPLR 73
           K+ILVPLPEPEARRAMFEELLPPQPGNEELPYDILM+RTEGYSGSDIRLVCKEAAMQPLR
Sbjct: 285 KRILVPLPEPEARRAMFEELLPPQPGNEELPYDILMERTEGYSGSDIRLVCKEAAMQPLR 344

Query: 74  RLMAQLEEQQKELPEDQQEVVPEEELPKVGPITASDIEIALRNTRPSAHLDAPRYEKFNA 133
           RLMAQLEEQQK LPEDQQ VVPEEELPK+GPITASDIEIALRNTRPSAHLDAPRYEKFNA
Sbjct: 345 RLMAQLEEQQKGLPEDQQGVVPEEELPKIGPITASDIEIALRNTRPSAHLDAPRYEKFNA 404

Query: 134 DYGSQLRH 142
           DYGSQLRH
Sbjct: 405 DYGSQLRH 412

[Close]

BLAST of Lsi01G001440.1 vs. NCBI nr
Match: XP_038883743.1 (katanin p60 ATPase-containing subunit A-like 2 isoform X1 [Benincasa hispida])

HSP 1 Score: 243.0 bits (619), Expect = 1.5e-60
Identity = 123/128 (96.09%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 14  KKILVPLPEPEARRAMFEELLPPQPGNEELPYDILMQRTEGYSGSDIRLVCKEAAMQPLR 73
           K+ILVPLPEPEARRAMFEELLPPQPGNEELPYDILM+RTEGYSGSDIRLVCKEAAMQPLR
Sbjct: 298 KRILVPLPEPEARRAMFEELLPPQPGNEELPYDILMERTEGYSGSDIRLVCKEAAMQPLR 357

Query: 74  RLMAQLEEQQKELPEDQQEVVPEEELPKVGPITASDIEIALRNTRPSAHLDAPRYEKFNA 133
           RLMAQLEEQQK LPEDQQ VVPEEELPK+GPITASDIEIALRNTRPSAHLDAPRYEKFNA
Sbjct: 358 RLMAQLEEQQKGLPEDQQGVVPEEELPKIGPITASDIEIALRNTRPSAHLDAPRYEKFNA 417

Query: 134 DYGSQLRH 142
           DYGSQLRH
Sbjct: 418 DYGSQLRH 425

[Close]

BLAST of Lsi01G001440.1 vs. NCBI nr
Match: KAE8647746.1 (hypothetical protein Csa_003684 [Cucumis sativus])

HSP 1 Score: 235.0 bits (598), Expect = 4.1e-58
Identity = 118/127 (92.91%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 14  KKILVPLPEPEARRAMFEELLPPQPGNEELPYDILMQRTEGYSGSDIRLVCKEAAMQPLR 73
           K+ILVPLPEPEARRAMFEELLPPQPG+E+LPYDILM+RTEGYSGSDIRLVCKEAAMQPLR
Sbjct: 746 KRILVPLPEPEARRAMFEELLPPQPGDEDLPYDILMERTEGYSGSDIRLVCKEAAMQPLR 805

Query: 74  RLMAQLEEQQKELPEDQQEVVPEEELPKVGPITASDIEIALRNTRPSAHLDAPRYEKFNA 133
           RLMAQLEEQQ ELPEDQQ VVPEEELPK+GPITASDI+ ALRNTRPSAHLDAPRYEKFNA
Sbjct: 806 RLMAQLEEQQNELPEDQQGVVPEEELPKIGPITASDIQTALRNTRPSAHLDAPRYEKFNA 865

Query: 134 DYGSQLR 141
           DYGSQLR
Sbjct: 866 DYGSQLR 872

[Close]

BLAST of Lsi01G001440.1 vs. TAIR 10
Match: AT2G34560.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 164.9 bits (416), Expect = 4.8e-41
Identity = 82/126 (65.08%), Postives = 103/126 (81.75%), Query Frame = 0


Query: 14  KKILVPLPEPEARRAMFEELLPPQPGNEELPYDILMQRTEGYSGSDIRLVCKEAAMQPLR 73
           K+ILVPLP+PEARR MFE L+P QPG+E LP+D+L++++EGYSGSDIR++CKEAAMQPLR
Sbjct: 265 KRILVPLPDPEARRGMFEMLIPSQPGDEPLPHDVLVEKSEGYSGSDIRILCKEAAMQPLR 324

Query: 74  RLMAQLEEQQKELPEDQQEVVPEEELPKVGPITASDIEIALRNTRPSAHLDAPRYEKFNA 133
           R +A L        ED+++VVPE+ELPK+GPI   DI+ AL NTRPSAHL A  Y+KFN 
Sbjct: 325 RTLAIL--------EDREDVVPEDELPKIGPILPEDIDRALSNTRPSAHLHAHLYDKFND 382

Query: 134 DYGSQL 140
           DYGSQ+
Sbjct: 385 DYGSQI 382

[Close]

BLAST of Lsi01G001440.1 vs. TAIR 10
Match: AT2G34560.2 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 164.9 bits (416), Expect = 4.8e-41
Identity = 82/126 (65.08%), Postives = 103/126 (81.75%), Query Frame = 0


Query: 14  KKILVPLPEPEARRAMFEELLPPQPGNEELPYDILMQRTEGYSGSDIRLVCKEAAMQPLR 73
           K+ILVPLP+PEARR MFE L+P QPG+E LP+D+L++++EGYSGSDIR++CKEAAMQPLR
Sbjct: 274 KRILVPLPDPEARRGMFEMLIPSQPGDEPLPHDVLVEKSEGYSGSDIRILCKEAAMQPLR 333

Query: 74  RLMAQLEEQQKELPEDQQEVVPEEELPKVGPITASDIEIALRNTRPSAHLDAPRYEKFNA 133
           R +A L        ED+++VVPE+ELPK+GPI   DI+ AL NTRPSAHL A  Y+KFN 
Sbjct: 334 RTLAIL--------EDREDVVPEDELPKIGPILPEDIDRALSNTRPSAHLHAHLYDKFND 391

Query: 134 DYGSQL 140
           DYGSQ+
Sbjct: 394 DYGSQI 391

[Close]

BLAST of Lsi01G001440.1 vs. TAIR 10
Match: AT2G45500.1 (AAA-type ATPase family protein )

HSP 1 Score: 58.2 bits (139), Expect = 6.4e-09
Identity = 41/128 (32.03%), Postives = 66/128 (51.56%), Query Frame = 0


Query: 12  MVKKILVPLPEPEARRAMFEELLPPQPGN-EELPYDILMQRTEGYSGSDIRLVCKEAAMQ 71
           +VK+I VPLP+   R+ +F+  L  QP +  +   D +++ TEGYSGSD++ +C+EAAM 
Sbjct: 378 LVKRIYVPLPDSNVRKLLFKTKLKCQPHSLSDGDIDKIVKETEGYSGSDLQALCEEAAMM 437

Query: 72  PLRRLMAQLEEQQKELPEDQQEVVPEEELPKVGPITASDIEIALRNTRPSAHLDA-PRYE 131
           P+R L A +   Q                 KV  +   D   ++   RPS         E
Sbjct: 438 PIRELGANILTIQAN---------------KVRSLRYDDFRKSMAVIRPSLSKSKWEELE 490

Query: 132 KFNADYGS 138
           ++N+++GS
Sbjct: 498 RWNSEFGS 490

[Close]

BLAST of Lsi01G001440.1 vs. TAIR 10
Match: AT2G45500.2 (AAA-type ATPase family protein )

HSP 1 Score: 58.2 bits (139), Expect = 6.4e-09
Identity = 41/128 (32.03%), Postives = 66/128 (51.56%), Query Frame = 0


Query: 12  MVKKILVPLPEPEARRAMFEELLPPQPGN-EELPYDILMQRTEGYSGSDIRLVCKEAAMQ 71
           +VK+I VPLP+   R+ +F+  L  QP +  +   D +++ TEGYSGSD++ +C+EAAM 
Sbjct: 374 LVKRIYVPLPDSNVRKLLFKTKLKCQPHSLSDGDIDKIVKETEGYSGSDLQALCEEAAMM 433

Query: 72  PLRRLMAQLEEQQKELPEDQQEVVPEEELPKVGPITASDIEIALRNTRPSAHLDA-PRYE 131
           P+R L A +   Q                 KV  +   D   ++   RPS         E
Sbjct: 434 PIRELGANILTIQAN---------------KVRSLRYDDFRKSMAVIRPSLSKSKWEELE 486

Query: 132 KFNADYGS 138
           ++N+++GS
Sbjct: 494 RWNSEFGS 486

[Close]

BLAST of Lsi01G001440.1 vs. TAIR 10
Match: AT1G80350.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 2.4e-08
Identity = 38/126 (30.16%), Postives = 70/126 (55.56%), Query Frame = 0


Query: 14  KKILVPLPEPEARRAMFEELLPPQPGNEELPYDILMQRTEGYSGSDIRLVCKEAAMQPLR 73
           K+I +PLP+ E+R+A+    L       ++  + + +RTEGYSG D+  VC++A+M  +R
Sbjct: 406 KRIYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGYSGDDLTNVCRDASMNGMR 465

Query: 74  RLMA-QLEEQQKELPEDQQEVVPEEELPKVGPITASDIEIALRNTRPS-AHLDAPRYEKF 133
           R +A +  ++ K + +D              P+   D E A+R  +PS +  D  ++EK+
Sbjct: 466 RKIAGKTRDEIKNMSKDD---------ISNDPVAMCDFEEAIRKVQPSVSSSDIEKHEKW 522

Query: 134 NADYGS 138
            +++GS
Sbjct: 526 LSEFGS 522

The following BLAST results are available for this feature:

BLAST of Lsi01G001440.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8IYT4	4.4e-15	42.11	Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens OX=9606 GN=KATNAL...	[more]
Q3B8D5	2.2e-14	39.39	Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus laevis OX=8355 GN=katn...	[more]
Q9D3R6	2.9e-14	41.67	Katanin p60 ATPase-containing subunit A-like 2 OS=Mus musculus OX=10090 GN=Katna...	[more]
A0JMA9	1.1e-13	39.39	Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis OX=8364 GN=...	[more]
P39955	8.1e-09	35.43	Protein SAP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]

BLAST of Lsi01G001440.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKN3	2.0e-58	92.91	AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G523400 PE=4 SV...	[more]
A0A1S3AZU5	1.7e-57	91.41	katanin p60 ATPase-containing subunit A-like 2 isoform X1 OS=Cucumis melo OX=365...	[more]
A0A1S3AZW4	1.7e-57	91.41	katanin p60 ATPase-containing subunit A-like 2 isoform X2 OS=Cucumis melo OX=365...	[more]
A0A1S3AYT2	1.7e-57	91.41	katanin p60 ATPase-containing subunit A-like 2 isoform X3 OS=Cucumis melo OX=365...	[more]
A0A6J1EJI5	8.3e-57	92.97	katanin p60 ATPase-containing subunit A-like 2 isoform X2 OS=Cucurbita moschata ...	[more]

BLAST of Lsi01G001440.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883745.1	1.5e-60	96.09	katanin p60 ATPase-containing subunit A-like 2 isoform X2 [Benincasa hispida]	[more]
XP_038883747.1	1.5e-60	96.09	katanin p60 ATPase-containing subunit A-like 2 isoform X4 [Benincasa hispida]	[more]
XP_038883746.1	1.5e-60	96.09	katanin p60 ATPase-containing subunit A-like 2 isoform X3 [Benincasa hispida]	[more]
XP_038883743.1	1.5e-60	96.09	katanin p60 ATPase-containing subunit A-like 2 isoform X1 [Benincasa hispida]	[more]
KAE8647746.1	4.1e-58	92.91	hypothetical protein Csa_003684 [Cucumis sativus]	[more]

BLAST of Lsi01G001440.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34560.1	4.8e-41	65.08	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT2G34560.2	4.8e-41	65.08	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT2G45500.1	6.4e-09	32.03	AAA-type ATPase family protein	[more]
AT2G45500.2	6.4e-09	32.03	AAA-type ATPase family protein	[more]
AT1G80350.1	2.4e-08	30.16	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 72..92
None	No IPR available	GENE3D	1.10.8.60		coord: 21..138 e-value: 2.1E-19 score: 71.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..96
None	No IPR available	PANTHER	PTHR23074	AAA DOMAIN-CONTAINING	coord: 13..139
None	No IPR available	PANTHER	PTHR23074:SF143	KATANIN P60 ATPASE-CONTAINING SUBUNIT A-LIKE 2 ISOFORM X1	coord: 13..139
IPR041569	AAA ATPase, AAA+ lid domain	PFAM	PF17862	AAA_lid_3	coord: 49..82 e-value: 9.5E-11 score: 41.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 14..125

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi01G001440	Lsi01G001440	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi01G001440.1.exon.3	Lsi01G001440.1.exon.3	exon
Lsi01G001440.1.exon.2	Lsi01G001440.1.exon.2	exon
Lsi01G001440.1.exon.1	Lsi01G001440.1.exon.1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi01G001440.1.three_prime_UTR.2	Lsi01G001440.1.three_prime_UTR.2	three_prime_UTR
Lsi01G001440.1.three_prime_UTR.1	Lsi01G001440.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi01G001440.1.CDS.2	Lsi01G001440.1.CDS.2	CDS
Lsi01G001440.1.CDS.1	Lsi01G001440.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi01G001440.1	Lsi01G001440.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity