Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACCCCATATTATTTGCTCAAGTGGCCAATGCATGCACTCCTCGTACCACCAAATTCCATGGCTAATGCGTCCTTCCAAAGCACAGCACGAGAAGCACTTTCGAGACTTGTACGACCTTTCAGACCACGAAGTTTATCACTTTGAATTGCCTCAACTTAGAGATAATCAACTTTTTTGTGGCTCTTCCAATGGTTGGTTGGTGATTTTGGAAAATGGTTTGACTCTTAATCTCTTCAATCCTCTCACCAAATCTCAACTCCCACTCCCTCCAATTTCTTCTTTTCCAGATGTCAAAAACTTTGATACCAATAGAAATGGAGCTGAGTATTTGATCATTCATCCAGCTACCAAAAAATCCTATGCCTTTAGCCACGCTAATGTCCATGTGGAATATATTTACAAAATTGTCTTCTCCTTTTCGACTTCGTCGTCGAATGATTTCATAGCCGACGGTCTAAAGTTGGCTTTTACGAAGCTTGGTGATGATAAATGGACATCTATTCCGACGTTCTTGGATTCTTTCCAAGATTGCGTCATTTTCCAAGGAAAAATCTATGCCGTGAATTGTTGA
mRNA sequence
ATGGAACCCCATATTATTTGCTCAAGTGGCCAATGCATGCACTCCTCGTACCACCAAATTCCATGGCTAATGCGTCCTTCCAAAGCACAGCACGAGAAGCACTTTCGAGACTTGTACGACCTTTCAGACCACGAAGTTTATCACTTTGAATTGCCTCAACTTAGAGATAATCAACTTTTTTGTGGCTCTTCCAATGGTTGGTTGGTGATTTTGGAAAATGGTTTGACTCTTAATCTCTTCAATCCTCTCACCAAATCTCAACTCCCACTCCCTCCAATTTCTTCTTTTCCAGATGTCAAAAACTTTGATACCAATAGAAATGGAGCTGAGTATTTGATCATTCATCCAGCTACCAAAAAATCCTATGCCTTTAGCCACGCTAATGTCCATGTGGAATATATTTACAAAATTGTCTTCTCCTTTTCGACTTCGTCGTCGAATGATTTCATAGCCGACGGTCTAAAGTTGGCTTTTACGAAGCTTGGTGATGATAAATGGACATCTATTCCGACGTTCTTGGATTCTTTCCAAGATTGCGTCATTTTCCAAGGAAAAATCTATGCCGTGAATTGTTGA
Coding sequence (CDS)
ATGGAACCCCATATTATTTGCTCAAGTGGCCAATGCATGCACTCCTCGTACCACCAAATTCCATGGCTAATGCGTCCTTCCAAAGCACAGCACGAGAAGCACTTTCGAGACTTGTACGACCTTTCAGACCACGAAGTTTATCACTTTGAATTGCCTCAACTTAGAGATAATCAACTTTTTTGTGGCTCTTCCAATGGTTGGTTGGTGATTTTGGAAAATGGTTTGACTCTTAATCTCTTCAATCCTCTCACCAAATCTCAACTCCCACTCCCTCCAATTTCTTCTTTTCCAGATGTCAAAAACTTTGATACCAATAGAAATGGAGCTGAGTATTTGATCATTCATCCAGCTACCAAAAAATCCTATGCCTTTAGCCACGCTAATGTCCATGTGGAATATATTTACAAAATTGTCTTCTCCTTTTCGACTTCGTCGTCGAATGATTTCATAGCCGACGGTCTAAAGTTGGCTTTTACGAAGCTTGGTGATGATAAATGGACATCTATTCCGACGTTCTTGGATTCTTTCCAAGATTGCGTCATTTTCCAAGGAAAAATCTATGCCGTGAATTGTTGA
Protein sequence
MEPHIICSSGQCMHSSYHQIPWLMRPSKAQHEKHFRDLYDLSDHEVYHFELPQLRDNQLFCGSSNGWLVILENGLTLNLFNPLTKSQLPLPPISSFPDVKNFDTNRNGAEYLIIHPATKKSYAFSHANVHVEYIYKIVFSFSTSSSNDFIADGLKLAFTKLGDDKWTSIPTFLDSFQDCVIFQGKIYAVNC
Homology
BLAST of Lcy13g013250.1 vs. ExPASy TrEMBL
Match:
A0A6J1DP54 (F-box protein SKIP23-like OS=Momordica charantia OX=3673 GN=LOC111022516 PE=4 SV=1)
HSP 1 Score: 179.1 bits (453), Expect = 1.7e-41
Identity = 99/180 (55.00%), Postives = 120/180 (66.67%), Query Frame = 0
Query: 16 SYHQIPWLMRPSKAQHEKHFRDLYDLSDHEVYHFELPQLRDNQLFCGSSNGWLVILENGL 75
SY+ IP LM P H + R Y++ + +VY+ ELPQL NQ + GSS GWLV L+NGL
Sbjct: 46 SYYNIPCLMIPYH-PHNDNLRGFYNVLNQQVYYLELPQL-TNQKYIGSSKGWLVTLDNGL 105
Query: 76 TLNLFNPLTKSQLPLPPISSFPDVKNFDTNRNGAEYLIIHPATKKSYAFSHANVHVEYIY 135
TL L NPLTKSQL LPPISSFP + +D N G EY ++ P K + S A VH EYI
Sbjct: 106 TLQLLNPLTKSQLQLPPISSFPGIIGYDPNNQGEEYTLLRPMDKIN-TKSRARVHGEYIR 165
Query: 136 KIVFSFSTSSSNDFIADGL-----KLAFTKLGDDKWTSIPTFLDSFQDCVIFQGKIYAVN 191
KIV S S + SNDF+A + KLAFTK GDDKWT+I T L++F DC+ F GKIYAVN
Sbjct: 166 KIVLS-SLAPSNDFMAVAIYDSSDKLAFTKFGDDKWTAISTSLNNFHDCIYFDGKIYAVN 221
BLAST of Lcy13g013250.1 vs. ExPASy TrEMBL
Match:
A0A6J1DRH7 (F-box protein SKIP23-like OS=Momordica charantia OX=3673 GN=LOC111022508 PE=4 SV=1)
HSP 1 Score: 176.8 bits (447), Expect = 8.7e-41
Identity = 98/180 (54.44%), Postives = 119/180 (66.11%), Query Frame = 0
Query: 16 SYHQIPWLMRPSKAQHEKHFRDLYDLSDHEVYHFELPQLRDNQLFCGSSNGWLVILENGL 75
SY+ IP LM P H + R Y++ + +VY+ ELPQL NQ + GSS GWLV L+NGL
Sbjct: 46 SYYNIPCLMIPYH-PHNGNLRGFYNVLNQQVYYLELPQL-TNQKYIGSSKGWLVTLDNGL 105
Query: 76 TLNLFNPLTKSQLPLPPISSFPDVKNFDTNRNGAEYLIIHPATKKSYAFSHANVHVEYIY 135
TL L NPLTKSQL LPP SSFP + +D N G EY ++ P K + S A VH EYI
Sbjct: 106 TLQLLNPLTKSQLQLPPTSSFPGIIGYDPNNQGEEYTLLRPMDKIN-TKSRARVHGEYIR 165
Query: 136 KIVFSFSTSSSNDFIADGL-----KLAFTKLGDDKWTSIPTFLDSFQDCVIFQGKIYAVN 191
KIV S S + SNDF+A + KLAFTK GDDKWT+I T L++F DC+ F GKIYAVN
Sbjct: 166 KIVLS-SLAPSNDFMAVAIYDSSDKLAFTKFGDDKWTAISTSLNNFHDCIYFDGKIYAVN 221
BLAST of Lcy13g013250.1 vs. ExPASy TrEMBL
Match:
A0A200QKB6 (DUF295 domain-containing protein OS=Macleaya cordata OX=56857 GN=BVC80_8879g8 PE=4 SV=1)
HSP 1 Score: 126.7 bits (317), Expect = 1.0e-25
Identity = 70/179 (39.11%), Postives = 104/179 (58.10%), Query Frame = 0
Query: 19 QIPWLMRPSKAQHEKHFRDLYDLSDHEVYHFELPQLRDNQLFCGSSNGWLVIL-ENGLTL 78
Q+PWLM P Q+EKH DLS+ +V+ +P+ + CGSS+GWLV+L E T+
Sbjct: 50 QLPWLMLPFDGQNEKH--GFLDLSEKKVHQLSIPETQTRSRCCGSSHGWLVLLEEKNPTI 109
Query: 79 NLFNPLTKSQLPLPPISSFPDVKNFDTNRNGAEYLIIHPATKKSYAFSHANVHVEYIYKI 138
L NP T+ Q+ LPPI+SFP+V +F + G EYL+ +P + Y ++H +I K+
Sbjct: 110 LLLNPFTRIQIQLPPITSFPNVWDFQIHNVGEEYLVKYPFEEHPYPNKLEDIHDFFIKKV 169
Query: 139 VFSFS-TSSSNDFIADGL-----KLAFTKLGDDKWTSIPTFLDSFQDCVIFQGKIYAVN 191
+ S + TS D+IA + +LAF K GD+ WT I +D + F+G +AVN
Sbjct: 170 ILSSNPTSLDKDYIAVAILDLTKELAFCKKGDESWTIIEAAESYCEDVIYFKGLFFAVN 226
BLAST of Lcy13g013250.1 vs. ExPASy TrEMBL
Match:
A0A1U8AVH9 (F-box protein SKIP23-like OS=Nelumbo nucifera OX=4432 GN=LOC104604339 PE=4 SV=1)
HSP 1 Score: 119.8 bits (299), Expect = 1.3e-23
Identity = 60/177 (33.90%), Postives = 105/177 (59.32%), Query Frame = 0
Query: 19 QIPWLMRPSKAQHEKHFRDLYDLSDHEVYHFELPQLRDNQLFCGSSNGWLVILENGLTLN 78
Q+PWLM P+ ++ R + LSD +++ ELP+ + CGSS GWLV++E +
Sbjct: 50 QLPWLMLPNTRNNDT-CRGFFSLSDDKIHWLELPEASRRRRCCGSSQGWLVVVEESPVIR 109
Query: 79 LFNPLTKSQLPLPPISSFPDVKNFDTNRNGAEYLIIHPATKKSYAFSHANVHVEYIYKIV 138
L NPLT++Q+ LPP+++FP+V FD R G EY + ++ Y+ + + ++ K++
Sbjct: 110 LLNPLTRAQIQLPPLTTFPNVLGFDVYRIGKEY-TLQTSSGDCYSRNLKEMRDSFLKKVI 169
Query: 139 FSFSTSSSNDFIADGL-----KLAFTKLGDDKWTSIPTFLDSFQDCVIFQGKIYAVN 191
S S +SS++++A + +LAF + GD+ WT I ++D + ++G YAV+
Sbjct: 170 LSSSPASSSEYVALAILNETGELAFCRHGDEGWTFIEDAQPCYEDVICYKGLFYAVD 224
BLAST of Lcy13g013250.1 vs. ExPASy TrEMBL
Match:
A0A7J6F752 (F-box domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_012467 PE=4 SV=1)
HSP 1 Score: 119.0 bits (297), Expect = 2.1e-23
Identity = 68/178 (38.20%), Postives = 96/178 (53.93%), Query Frame = 0
Query: 19 QIPWLMRPSKAQHEKHFRDLYDLSDHEVYHFELPQ-LRDNQLFCGSSNGWLVILENGLTL 78
Q+PWLM P H ++LS ++VY LP+ L + CGSS+GWLVIL+ +L
Sbjct: 50 QLPWLMLPKSRHRRPHSAAFFNLSSNKVYLINLPEALSHGKRCCGSSHGWLVILDETPSL 109
Query: 79 NLFNPLTKSQLPLPPISSFPDVKNFDTNRNGAEYLIIHPATKKSYAFSHANVHVEYIYKI 138
L NPLT+S+ LPPIS+FP+V F + G EY + P + +SY + + ++ K+
Sbjct: 110 LLLNPLTRSKFHLPPISTFPNVLRFSYSEIGREYALRSP-SGESYTQNLRQIRDSFVKKV 169
Query: 139 VFSFSTSSSNDFIADGL-----KLAFTKLGDDKWTSIPTFLDSFQDCVIFQGKIYAVN 191
V S S SN F+A + LAF K GD WT I +D + + YAVN
Sbjct: 170 VLSSSPKESNGFVALAILHETGDLAFCKSGDQTWTFIEGASSYSEDVIHYNSSFYAVN 226
BLAST of Lcy13g013250.1 vs. NCBI nr
Match:
XP_022155372.1 (F-box protein SKIP23-like [Momordica charantia])
HSP 1 Score: 179.1 bits (453), Expect = 3.6e-41
Identity = 99/180 (55.00%), Postives = 120/180 (66.67%), Query Frame = 0
Query: 16 SYHQIPWLMRPSKAQHEKHFRDLYDLSDHEVYHFELPQLRDNQLFCGSSNGWLVILENGL 75
SY+ IP LM P H + R Y++ + +VY+ ELPQL NQ + GSS GWLV L+NGL
Sbjct: 46 SYYNIPCLMIPYH-PHNDNLRGFYNVLNQQVYYLELPQL-TNQKYIGSSKGWLVTLDNGL 105
Query: 76 TLNLFNPLTKSQLPLPPISSFPDVKNFDTNRNGAEYLIIHPATKKSYAFSHANVHVEYIY 135
TL L NPLTKSQL LPPISSFP + +D N G EY ++ P K + S A VH EYI
Sbjct: 106 TLQLLNPLTKSQLQLPPISSFPGIIGYDPNNQGEEYTLLRPMDKIN-TKSRARVHGEYIR 165
Query: 136 KIVFSFSTSSSNDFIADGL-----KLAFTKLGDDKWTSIPTFLDSFQDCVIFQGKIYAVN 191
KIV S S + SNDF+A + KLAFTK GDDKWT+I T L++F DC+ F GKIYAVN
Sbjct: 166 KIVLS-SLAPSNDFMAVAIYDSSDKLAFTKFGDDKWTAISTSLNNFHDCIYFDGKIYAVN 221
BLAST of Lcy13g013250.1 vs. NCBI nr
Match:
XP_022155366.1 (F-box protein SKIP23-like [Momordica charantia])
HSP 1 Score: 176.8 bits (447), Expect = 1.8e-40
Identity = 98/180 (54.44%), Postives = 119/180 (66.11%), Query Frame = 0
Query: 16 SYHQIPWLMRPSKAQHEKHFRDLYDLSDHEVYHFELPQLRDNQLFCGSSNGWLVILENGL 75
SY+ IP LM P H + R Y++ + +VY+ ELPQL NQ + GSS GWLV L+NGL
Sbjct: 46 SYYNIPCLMIPYH-PHNGNLRGFYNVLNQQVYYLELPQL-TNQKYIGSSKGWLVTLDNGL 105
Query: 76 TLNLFNPLTKSQLPLPPISSFPDVKNFDTNRNGAEYLIIHPATKKSYAFSHANVHVEYIY 135
TL L NPLTKSQL LPP SSFP + +D N G EY ++ P K + S A VH EYI
Sbjct: 106 TLQLLNPLTKSQLQLPPTSSFPGIIGYDPNNQGEEYTLLRPMDKIN-TKSRARVHGEYIR 165
Query: 136 KIVFSFSTSSSNDFIADGL-----KLAFTKLGDDKWTSIPTFLDSFQDCVIFQGKIYAVN 191
KIV S S + SNDF+A + KLAFTK GDDKWT+I T L++F DC+ F GKIYAVN
Sbjct: 166 KIVLS-SLAPSNDFMAVAIYDSSDKLAFTKFGDDKWTAISTSLNNFHDCIYFDGKIYAVN 221
BLAST of Lcy13g013250.1 vs. NCBI nr
Match:
OVA10871.1 (Protein of unknown function DUF295 [Macleaya cordata])
HSP 1 Score: 126.7 bits (317), Expect = 2.1e-25
Identity = 70/179 (39.11%), Postives = 104/179 (58.10%), Query Frame = 0
Query: 19 QIPWLMRPSKAQHEKHFRDLYDLSDHEVYHFELPQLRDNQLFCGSSNGWLVIL-ENGLTL 78
Q+PWLM P Q+EKH DLS+ +V+ +P+ + CGSS+GWLV+L E T+
Sbjct: 50 QLPWLMLPFDGQNEKH--GFLDLSEKKVHQLSIPETQTRSRCCGSSHGWLVLLEEKNPTI 109
Query: 79 NLFNPLTKSQLPLPPISSFPDVKNFDTNRNGAEYLIIHPATKKSYAFSHANVHVEYIYKI 138
L NP T+ Q+ LPPI+SFP+V +F + G EYL+ +P + Y ++H +I K+
Sbjct: 110 LLLNPFTRIQIQLPPITSFPNVWDFQIHNVGEEYLVKYPFEEHPYPNKLEDIHDFFIKKV 169
Query: 139 VFSFS-TSSSNDFIADGL-----KLAFTKLGDDKWTSIPTFLDSFQDCVIFQGKIYAVN 191
+ S + TS D+IA + +LAF K GD+ WT I +D + F+G +AVN
Sbjct: 170 ILSSNPTSLDKDYIAVAILDLTKELAFCKKGDESWTIIEAAESYCEDVIYFKGLFFAVN 226
BLAST of Lcy13g013250.1 vs. NCBI nr
Match:
KAF8405484.1 (hypothetical protein HHK36_010391 [Tetracentron sinense])
HSP 1 Score: 126.7 bits (317), Expect = 2.1e-25
Identity = 68/178 (38.20%), Postives = 107/178 (60.11%), Query Frame = 0
Query: 19 QIPWLMRPSKAQHEKHFRDLYDLSDHEVYHFELPQLRDNQLFCGSSNGWLVILENGLTLN 78
Q PWLM P+ + E H R + LS+++VYH ELP+ + CGSS GWLV+ E +
Sbjct: 50 QPPWLMLPNSRRRETH-RSFFSLSENKVYHLELPEASFRRRCCGSSQGWLVLAEESPAIR 109
Query: 79 LFNPLTKSQLPLPPISSFPDVKNFDTNRNGAEYLIIHPATKKSYAFSHANVHVEYIYKIV 138
L NPLT++Q+ LPP+SSFP+V NF +R G EYL+++ + + Y + + ++ K++
Sbjct: 110 LLNPLTRTQIQLPPLSSFPNVLNFSISRIGREYLLLNSSGHR-YYHNLREMRDLFLKKVI 169
Query: 139 FSFSTSSSN-DFIADGL-----KLAFTKLGDDKWTSIPTFLDSFQDCVIFQGKIYAVN 191
S S SS++ D+I + LAF + GD WT + L ++D + ++G YAV+
Sbjct: 170 LSSSPSSADGDYIVMAILNETGLLAFCRKGDLLWTVMAEALPYYEDVIYYKGLFYAVD 225
BLAST of Lcy13g013250.1 vs. NCBI nr
Match:
XP_010266939.1 (PREDICTED: F-box protein SKIP23-like [Nelumbo nucifera] >DAD46658.1 TPA_asm: hypothetical protein HUJ06_016595 [Nelumbo nucifera])
HSP 1 Score: 119.8 bits (299), Expect = 2.6e-23
Identity = 60/177 (33.90%), Postives = 105/177 (59.32%), Query Frame = 0
Query: 19 QIPWLMRPSKAQHEKHFRDLYDLSDHEVYHFELPQLRDNQLFCGSSNGWLVILENGLTLN 78
Q+PWLM P+ ++ R + LSD +++ ELP+ + CGSS GWLV++E +
Sbjct: 50 QLPWLMLPNTRNNDT-CRGFFSLSDDKIHWLELPEASRRRRCCGSSQGWLVVVEESPVIR 109
Query: 79 LFNPLTKSQLPLPPISSFPDVKNFDTNRNGAEYLIIHPATKKSYAFSHANVHVEYIYKIV 138
L NPLT++Q+ LPP+++FP+V FD R G EY + ++ Y+ + + ++ K++
Sbjct: 110 LLNPLTRAQIQLPPLTTFPNVLGFDVYRIGKEY-TLQTSSGDCYSRNLKEMRDSFLKKVI 169
Query: 139 FSFSTSSSNDFIADGL-----KLAFTKLGDDKWTSIPTFLDSFQDCVIFQGKIYAVN 191
S S +SS++++A + +LAF + GD+ WT I ++D + ++G YAV+
Sbjct: 170 LSSSPASSSEYVALAILNETGELAFCRHGDEGWTFIEDAQPCYEDVICYKGLFYAVD 224
BLAST of Lcy13g013250.1 vs. TAIR 10
Match:
AT5G55150.1 (Protein of unknown function (DUF295) )
HSP 1 Score: 42.4 bits (98), Expect = 4.9e-04
Identity = 34/137 (24.82%), Postives = 58/137 (42.34%), Query Frame = 0
Query: 60 FCGSSNGWLVILENGLTLNLFNPLTKSQLPLPPISSFPDVKNFDTNRNGAEYLIIHPATK 119
F G+ W + + L L P+TKS LPP+ SF DV+ + I P ++
Sbjct: 83 FSGNQQAW--VCGSTLGFLLTKPVTKSVTSLPPLISFEDVQRL------LQSQAIIPDSE 142
Query: 120 ------KSYAFSHANVHVEYIYKIVFSFSTSSSNDFIADGLKLAFTKLGDDKWTSIPTFL 179
K S + + E++ ++++ KLAF + GD +WT + +
Sbjct: 143 ALKNFIKKAVSSTSLLDDEWVVLVIYNTDR-----------KLAFCRRGDKQWTDLESVA 200
Query: 180 DSFQDCVIFQGKIYAVN 191
S D V G +A++
Sbjct: 203 SSVDDIVFCNGVFFAID 200
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DP54 | 1.7e-41 | 55.00 | F-box protein SKIP23-like OS=Momordica charantia OX=3673 GN=LOC111022516 PE=4 SV... | [more] |
A0A6J1DRH7 | 8.7e-41 | 54.44 | F-box protein SKIP23-like OS=Momordica charantia OX=3673 GN=LOC111022508 PE=4 SV... | [more] |
A0A200QKB6 | 1.0e-25 | 39.11 | DUF295 domain-containing protein OS=Macleaya cordata OX=56857 GN=BVC80_8879g8 PE... | [more] |
A0A1U8AVH9 | 1.3e-23 | 33.90 | F-box protein SKIP23-like OS=Nelumbo nucifera OX=4432 GN=LOC104604339 PE=4 SV=1 | [more] |
A0A7J6F752 | 2.1e-23 | 38.20 | F-box domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_012467 PE=4 ... | [more] |
Match Name | E-value | Identity | Description | |
XP_022155372.1 | 3.6e-41 | 55.00 | F-box protein SKIP23-like [Momordica charantia] | [more] |
XP_022155366.1 | 1.8e-40 | 54.44 | F-box protein SKIP23-like [Momordica charantia] | [more] |
OVA10871.1 | 2.1e-25 | 39.11 | Protein of unknown function DUF295 [Macleaya cordata] | [more] |
KAF8405484.1 | 2.1e-25 | 38.20 | hypothetical protein HHK36_010391 [Tetracentron sinense] | [more] |
XP_010266939.1 | 2.6e-23 | 33.90 | PREDICTED: F-box protein SKIP23-like [Nelumbo nucifera] >DAD46658.1 TPA_asm: hyp... | [more] |
Match Name | E-value | Identity | Description | |
AT5G55150.1 | 4.9e-04 | 24.82 | Protein of unknown function (DUF295) | [more] |