Lcy13g000490.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy13g000490.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	REF/SRPP-like protein At1g67360
Location	Chr13: 418761 .. 420788 (-)
Sequence length	1329
RNA-Seq Expression	Lcy13g000490.1
Synteny	Lcy13g000490.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTACCTTTGGCGCATTCTCACGTTAACCGTTGGATGACCGGCCAACGGAAATCCAACGCTCAGAACCACTGCAAATTAGCTGAACGGCTTTATATAAATTACAAAGCCGTTTTGATCTTTCGATATCTTTTAGAGCGGAAAAGGAAATACTGGAGCAGCATATTTCCGGAGACACAAACGTCACTGTAAGATTGTTTATTCTCTGTTTGCGTGCGAAGATAATTTTGTTCTGATTTCGTTTTTTTTTTTTTTCTTTTTGTTGTCTCTGAAAATTTGCGGTACTAATCGATCGGAATCAACAGATGGAGAACGAAAGCAGGAATCTGGAGTTGAAGCATCTAGGTTTTGTCAGGATCGCTGTGATTCAGACGATTGTGTGTGTTACGAATCTGTATGATTATGCGAAGCAGAACTCTGGTCCTCTGAGATCTGCGGTTGAAAGTGTGGAGAGCGCTGTAAACACAGTTGTGACGCCTGCCTACGAGAAGCTCCGCATCGCGCCTGATGATGTTCTTGTTTTTCTTGACGAGAAGGTATTCTTTATTTTCTCTAATCGCTTCGACTTATTTGTAACCTATAGATGCCTTTCTTGGATCAATTTAGTGCATTATTTTTTAGTTTGTTTTTATGATCCAATCAATTGTATGGTTTAGTGTCGATCTGGCTGGTGATTGAGTCGATGGTGATGTTTTGCGTTCCAGATGTTTGATTAGAGCCAACTCTGCGATCTAGATTACAAGGATGATTTTTTTTTCCAGCCTTCGCTGCATGATGAGATTTCGAAAATTATTTTCTCTTGATATGAAATTAAATCCAAGAGTCCCCTACTGAAGTGTAGAATTCATATATATTTCTTACCTGGTAAATACGGTTGAAATTAGAGTATCAACGATCAATTTAGTTTTCTAAACACTGAGCATGCATTCCTTAGCTGATGTTACGAGTCGCTTCCCTTCCTTCCCACGGAACAAGATTAGTGAAGATGAATGCTGGTTGGTTCATAATTTATTCAAGGGGCTATTAGAGAGAGTCTACAGTACTAATTATGTGTTTGCTGGTATAATGATTTCTGGCTGAAATGAACGTTTGTTATCTTGGTGGGAATTTTGTTGCAGGTTGACAAAGCAACATGTGAGTTTGATAAGCGTGCTCCTCCTCTGGCAAAACAAGCCGTTCAAATTACTCAGCATTTTATCCAAAAGGCTGCTGAAACTGGCCAAGTACTTGTGAATGAGTTTCAAACTGGCGGACCACGCGCAGCATTCCACTATGCAGCGAAGGAGTACAAGCAATTGGTTCTAAACCAAGGAGTGAAGATTTGGGCAGGGCTCAACCGGCTTCCATCGTTCCACAAGTTTGCAGACATGGCAGTGCCATCGGCAGTTCAGTGGTTGGAGAGTTACAACTGCAAAGTGAAAGATATGAGGCAGAAGGGCTACTACGTGTTCGACTACTTTCCTGAAGTTCCTGTGAGTGAGATAGCCAAGGCATATAAGGAGGGCGAGGCCAAGACGAAGGAAGAACCATCTCCACCTACTCCTGAGCAAGCTCCAACGGAGCACAAACCGGGTTCGGATTCAGATTCGGAATCGGAATCAGAAACGGTTTCAGTTTCCAATTAGAAAATGGTTTCTAGTTTCATCACCTAATCATCTGGTTTGCAAGAGTACGTTGTTGATGATGTACGAGCACAACGTTGATGAATTGCAGCTATTGAAATTTCAAGAAGTCTGAAGCCTTAGAAGGCTGTAGATAAGTGTGGATGGCACTTGATGTTGATATGGTGACTAGGGCAATGTCTGTTTGTGTTATGTGAACGAGTAGCTGAAGTTTTAGAATGTGATGCTTGTTGCTTGCTTTTTAGATTCTATGTGATTTGAGGAAGATAATAAAATCAATCATGCCATTAAAACTGCGAGGCGTGGATCAAACCCTCATACGTGATAGACAAAACAATGCTGGTTTTAAAACAAGAACTAATCCATTTAATGAAAATAGTGAACCAAGGTATTCCCACAATTCAAAGAA

mRNA sequence

CTACCTTTGGCGCATTCTCACGTTAACCGTTGGATGACCGGCCAACGGAAATCCAACGCTCAGAACCACTGCAAATTAGCTGAACGGCTTTATATAAATTACAAAGCCGTTTTGATCTTTCGATATCTTTTAGAGCGGAAAAGGAAATACTGGAGCAGCATATTTCCGGAGACACAAACGTCACTATGGAGAACGAAAGCAGGAATCTGGAGTTGAAGCATCTAGGTTTTGTCAGGATCGCTGTGATTCAGACGATTGTGTGTGTTACGAATCTGTATGATTATGCGAAGCAGAACTCTGGTCCTCTGAGATCTGCGGTTGAAAGTGTGGAGAGCGCTGTAAACACAGTTGTGACGCCTGCCTACGAGAAGCTCCGCATCGCGCCTGATGATGTTCTTGTTTTTCTTGACGAGAAGGTTGACAAAGCAACATGTGAGTTTGATAAGCGTGCTCCTCCTCTGGCAAAACAAGCCGTTCAAATTACTCAGCATTTTATCCAAAAGGCTGCTGAAACTGGCCAAGTACTTGTGAATGAGTTTCAAACTGGCGGACCACGCGCAGCATTCCACTATGCAGCGAAGGAGTACAAGCAATTGGTTCTAAACCAAGGAGTGAAGATTTGGGCAGGGCTCAACCGGCTTCCATCGTTCCACAAGTTTGCAGACATGGCAGTGCCATCGGCAGTTCAGTGGTTGGAGAGTTACAACTGCAAAGTGAAAGATATGAGGCAGAAGGGCTACTACGTGTTCGACTACTTTCCTGAAGTTCCTGTGAGTGAGATAGCCAAGGCATATAAGGAGGGCGAGGCCAAGACGAAGGAAGAACCATCTCCACCTACTCCTGAGCAAGCTCCAACGGAGCACAAACCGGGTTCGGATTCAGATTCGGAATCGGAATCAGAAACGGTTTCAGTTTCCAATTAGAAAATGGTTTCTAGTTTCATCACCTAATCATCTGGTTTGCAAGAGTACGTTGTTGATGATGTACGAGCACAACGTTGATGAATTGCAGCTATTGAAATTTCAAGAAGTCTGAAGCCTTAGAAGGCTGTAGATAAGTGTGGATGGCACTTGATGTTGATATGGTGACTAGGGCAATGTCTGTTTGTGTTATGTGAACGAGTAGCTGAAGTTTTAGAATGTGATGCTTGTTGCTTGCTTTTTAGATTCTATGTGATTTGAGGAAGATAATAAAATCAATCATGCCATTAAAACTGCGAGGCGTGGATCAAACCCTCATACGTGATAGACAAAACAATGCTGGTTTTAAAACAAGAACTAATCCATTTAATGAAAATAGTGAACCAAGGTATTCCCACAATTCAAAGAA

Coding sequence (CDS)

ATGGAGAACGAAAGCAGGAATCTGGAGTTGAAGCATCTAGGTTTTGTCAGGATCGCTGTGATTCAGACGATTGTGTGTGTTACGAATCTGTATGATTATGCGAAGCAGAACTCTGGTCCTCTGAGATCTGCGGTTGAAAGTGTGGAGAGCGCTGTAAACACAGTTGTGACGCCTGCCTACGAGAAGCTCCGCATCGCGCCTGATGATGTTCTTGTTTTTCTTGACGAGAAGGTTGACAAAGCAACATGTGAGTTTGATAAGCGTGCTCCTCCTCTGGCAAAACAAGCCGTTCAAATTACTCAGCATTTTATCCAAAAGGCTGCTGAAACTGGCCAAGTACTTGTGAATGAGTTTCAAACTGGCGGACCACGCGCAGCATTCCACTATGCAGCGAAGGAGTACAAGCAATTGGTTCTAAACCAAGGAGTGAAGATTTGGGCAGGGCTCAACCGGCTTCCATCGTTCCACAAGTTTGCAGACATGGCAGTGCCATCGGCAGTTCAGTGGTTGGAGAGTTACAACTGCAAAGTGAAAGATATGAGGCAGAAGGGCTACTACGTGTTCGACTACTTTCCTGAAGTTCCTGTGAGTGAGATAGCCAAGGCATATAAGGAGGGCGAGGCCAAGACGAAGGAAGAACCATCTCCACCTACTCCTGAGCAAGCTCCAACGGAGCACAAACCGGGTTCGGATTCAGATTCGGAATCGGAATCAGAAACGGTTTCAGTTTCCAATTAG

Protein sequence

MENESRNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAYEKLRIAPDDVLVFLDEKVDKATCEFDKRAPPLAKQAVQITQHFIQKAAETGQVLVNEFQTGGPRAAFHYAAKEYKQLVLNQGVKIWAGLNRLPSFHKFADMAVPSAVQWLESYNCKVKDMRQKGYYVFDYFPEVPVSEIAKAYKEGEAKTKEEPSPPTPEQAPTEHKPGSDSDSESESETVSVSN

Homology

[Close]

BLAST of Lcy13g000490.1 vs. ExPASy Swiss-Prot
Match: Q9FYF7 (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana OX=3702 GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.9e-53
Identity = 115/240 (47.92%), Postives = 148/240 (61.67%), Query Frame = 0


Query: 1   MENESRN---LELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVT 60
           ME E +N   + LKHL FVRIA I  +  V+NLY+YAKQNSGPL+SAVE VE AV TVVT
Sbjct: 1   METEKKNSKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVT 60

Query: 61  PAYEKLRIAPDDVLVFLDEKVDKATCEFDKRAPPLAKQAVQITQHFIQKAAETGQVLVNE 120
           P Y+K +  PD +LVFLD KV + + +FD+ APP+AK+ V      I KA E  Q  V E
Sbjct: 61  PVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKE 120

Query: 121 FQTGGPRAAFHYAAKEYKQLVLNQGVKIWAGLNRLPSFHKFADMAVPSAVQWLESYNCKV 180
            +TGGP+AAF+YAA EYK  V+   VK+WA LN+    H   D A+P A  +   YN  V
Sbjct: 121 ARTGGPKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLV 180

Query: 181 KDMRQKGYYVFDYFPEVPVSEIAKAYKEGEAKTKEEPSPPTPEQAPTEHKPGSDSDSESE 238
            DM   GY +  Y P VPV +I KAY++ +A+ K+       +   T+   G  S S+SE
Sbjct: 181 TDMTNMGYSLVGYLPLVPVDDIVKAYEKEDARRKKGGDTAGKKGETTDAADGDKSSSDSE 240

[Close]

BLAST of Lcy13g000490.1 vs. ExPASy Swiss-Prot
Match: Q9SW70 (Stress-related protein OS=Vitis riparia OX=96939 GN=SRP PE=2 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 6.3e-33
Identity = 80/214 (37.38%), Postives = 114/214 (53.27%), Query Frame = 0


Query: 10  LKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAYEKLRIAPDD 69
           LK+L FV++A I  IVC ++LY+YAK+NSGPL+  V++VE  V TV+ P YEK    P +
Sbjct: 20  LKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYDVPFE 79

Query: 70  VLVFLDEKVDKATCEFDKRAPPLAKQAVQITQHFIQKAAETGQVLVNEFQ---------- 129
           +L+F+D KV+ +  E ++  P L K+A        QKA E    + +E Q          
Sbjct: 80  LLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPELALAVASEVQRPGVVDTAKN 139

Query: 130 -TGGPRAAFHYAAKE----YKQLVLNQGVKIWAGLNRLPSFHKFADMAVPSAVQWLESYN 189
            T    +     AKE    Y+ +     V  W  LNRLP F + A + VP+A  W E YN
Sbjct: 140 ITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLPLFPQVAQVVVPTAAYWSEKYN 199

Query: 190 CKVKDMRQKGYYVFDYFPEVPVSEIAKAYKEGEA 209
             V    ++GY V  Y P +P   IAK +++G A
Sbjct: 200 QSVSYTAERGYTVALYLPLIPTERIAKVFQDGSA 233

[Close]

BLAST of Lcy13g000490.1 vs. ExPASy Swiss-Prot
Match: Q9MA63 (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana OX=3702 GN=At3g05500 PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.2e-29
Identity = 80/217 (36.87%), Postives = 111/217 (51.15%), Query Frame = 0


Query: 10  LKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAYEKLRIAPDD 69
           LK+L FV+ A ++ ++    +Y  AK  SGPL+  VESVE AV TVV P YEK    P +
Sbjct: 22  LKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVE 81

Query: 70  VLVFLDEKVDKATCEFDKRAPPLAKQAVQITQHFIQKAAETGQVLVNEFQTGG------- 129
           VL ++D+KVD +  E D+R PP+ KQ         Q A    + L +E +  G       
Sbjct: 82  VLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVETASG 141

Query: 130 ----PRAAFHYAAKE----YKQLVLNQGVKIWAGLNRLPSFHKFADMAVPSAVQWLESYN 189
                 + +  AAKE    Y+       V  W  LN+LP F + A +AVP+A    E YN
Sbjct: 142 MAKSVYSKYEPAAKELYANYEPKAEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKYN 201

Query: 190 CKVKDMRQKGYYVFDYFPEVPVSEIAKAYKEGEAKTK 212
             V    +KGY V  Y P VP   I+K + E +A+T+
Sbjct: 202 DTVVKAAEKGYRVTSYMPLVPTERISKIFAEEKAETE 238

[Close]

BLAST of Lcy13g000490.1 vs. ExPASy Swiss-Prot
Match: O82246 (REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana OX=3702 GN=At2g47780 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.5e-26
Identity = 63/202 (31.19%), Postives = 104/202 (51.49%), Query Frame = 0


Query: 8   LELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAYEKLRIAP 67
           ++LKHL F+++A +    C + LY+ AK N+GPL+  VE++E  V TV+ P YEK    P
Sbjct: 39  MKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVP 98

Query: 68  DDVLVFLDEKVDKATCEFDKRAPPLAKQAVQITQHFIQKAAETGQVLVNEFQTGGPRAAF 127
             +L+F+D KVD    + +   P L KQA         +   TG V   +      R  +
Sbjct: 99  FKLLLFVDRKVDDVFFDVETYVPSLVKQASSQALTVATEVQRTGVVDTTKSIARSVRDKY 158

Query: 128 HYAAKEYKQLVLNQGVKIWAGLNRLPSFHKFADMAVPSAVQWLESYNCKVKDMRQKGYYV 187
             AA+ Y          +W  LN+LP F + A + +P+A  W E YN  V+ +  + Y+ 
Sbjct: 159 EPAAEYY-------AATLWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYVGDRDYFG 218

Query: 188 FDYFPEVPVSEIAKAYKEGEAK 210
            +Y P +P+ +I+   ++ + +
Sbjct: 219 AEYLPMIPIEKISDILEQDQCR 233

[Close]

BLAST of Lcy13g000490.1 vs. ExPASy Swiss-Prot
Match: A2Y0H2 (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_017815 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.1e-24
Identity = 73/230 (31.74%), Postives = 106/230 (46.09%), Query Frame = 0


Query: 1   MENESRNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60
           ME  +    L++L FV+ A  Q +V     Y YAKQ +GPLR  V+ VE  V  VV P Y
Sbjct: 26  MEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVY 85

Query: 61  EKLRIAPDDVLVFLDEKVDKATCEFDKRAPPLAKQAVQITQHFIQKAAETGQV------L 120
           ++    P D+L FLD KV ++  E D+R PP+ K+A  + +    +  + G V       
Sbjct: 86  DRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLA 145

Query: 121 VNEFQTGGPRAAFHYAAKEYKQLVLNQGVKIWAGLNRLPSFHKFADMAVPSAVQWLESYN 180
            +      PRA   Y    Y+ +   +  + WA LNRLP         +P+A      YN
Sbjct: 146 KSAIARAEPRARDLYT--RYEPVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYN 205

Query: 181 CKVKDMRQKGYYVFDYFPEVPVSEIAKAYKEGEAKTKEEPSP---PTPEQ 222
             V D  ++G  V  Y P VP   +++ +    A     P+P   P P Q
Sbjct: 206 TAVADGAKRGSAVATYLPLVPTERLSRVFGYPLADAAASPAPEMQPIPSQ 253

[Close]

BLAST of Lcy13g000490.1 vs. ExPASy TrEMBL
Match: A0A0A0KS04 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589910 PE=3 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 4.6e-111
Identity = 207/242 (85.54%), Postives = 226/242 (93.39%), Query Frame = 0


Query: 1   MENESRNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60
           ME+ES+NLELKHLGFVR+A+IQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY
Sbjct: 1   MESESQNLELKHLGFVRVALIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60

Query: 61  EKLRIAPDDVLVFLDEKVDKATCEFDKRAPPLAKQAVQITQHFIQKAAETGQVLVNEFQT 120
           EKLRIAPDDVLVFLD KVDKAT EFDKRAPPLAKQA QITQHFIQKAA TGQ LVNEFQT
Sbjct: 61  EKLRIAPDDVLVFLDGKVDKATHEFDKRAPPLAKQAAQITQHFIQKAARTGQQLVNEFQT 120

Query: 121 GGPRAAFHYAAKEYKQLVLNQGVKIWAGLNRLPSFHKFADMAVPSAVQWLESYNCKVKDM 180
           GGPRAAFHYAA EYKQLVL+QGVKIWAGLNRLPSFHKFADMAVP+  QWLESYN KVK++
Sbjct: 121 GGPRAAFHYAANEYKQLVLDQGVKIWAGLNRLPSFHKFADMAVPTTAQWLESYNSKVKEL 180

Query: 181 RQKGYYVFDYFPEVPVSEIAKAYKEGEAKTKEEPSPPTPEQAPTEHKPGSDSDSESESET 240
           RQKGY+VFDY PEVPVSEIAKA+K+ E+K KEE SP TPEQAP++H+ GSDSDS+S+S +
Sbjct: 181 RQKGYHVFDYCPEVPVSEIAKAFKQDESKKKEETSPNTPEQAPSKHEAGSDSDSDSDSAS 240

Query: 241 VS 243
           V+
Sbjct: 241 VA 242

[Close]

BLAST of Lcy13g000490.1 vs. ExPASy TrEMBL
Match: A0A5D3CW84 (REF/SRPP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002240 PE=3 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 7.8e-111
Identity = 208/245 (84.90%), Postives = 229/245 (93.47%), Query Frame = 0


Query: 1   MENESRNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60
           ME+ES+NLELKHLGFVRIA+IQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY
Sbjct: 1   MESESQNLELKHLGFVRIALIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60

Query: 61  EKLRIAPDDVLVFLDEKVDKATCEFDKRAPPLAKQAVQITQHFIQKAAETGQVLVNEFQT 120
           EKLRIAPDDVLVFLD KVDKAT EFDKRAPPLAKQA QITQHFIQKAA TG+ LVNEFQT
Sbjct: 61  EKLRIAPDDVLVFLDGKVDKATHEFDKRAPPLAKQAAQITQHFIQKAARTGKELVNEFQT 120

Query: 121 GGPRAAFHYAAKEYKQLVLNQGVKIWAGLNRLPSFHKFADMAVPSAVQWLESYNCKVKDM 180
           GGPRAAFHYAA EYKQLVL+QGVK+WAGLNRLPSFHKFADMAVP+A QWLESYN KVK++
Sbjct: 121 GGPRAAFHYAANEYKQLVLDQGVKMWAGLNRLPSFHKFADMAVPTAAQWLESYNSKVKEL 180

Query: 181 RQKGYYVFDYFPEVPVSEIAKAYKEGEAKTKEEPSPPTPEQAPTEHKPGSDSDSESESET 240
           RQKGY+VFDY PEVPVS+IAKA+K+GEAK KEE SP TPEQAP++++ GSDSDS+S+S +
Sbjct: 181 RQKGYHVFDYCPEVPVSKIAKAFKQGEAKEKEETSPTTPEQAPSKNEAGSDSDSDSDSAS 240

Query: 241 VSVSN 246
           V+  N
Sbjct: 241 VAGPN 245

[Close]

BLAST of Lcy13g000490.1 vs. ExPASy TrEMBL
Match: A0A1S3BEY9 (REF/SRPP-like protein At1g67360 OS=Cucumis melo OX=3656 GN=LOC103488889 PE=3 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 7.8e-111
Identity = 208/245 (84.90%), Postives = 229/245 (93.47%), Query Frame = 0


Query: 1   MENESRNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60
           ME+ES+NLELKHLGFVRIA+IQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY
Sbjct: 1   MESESQNLELKHLGFVRIALIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60

Query: 61  EKLRIAPDDVLVFLDEKVDKATCEFDKRAPPLAKQAVQITQHFIQKAAETGQVLVNEFQT 120
           EKLRIAPDDVLVFLD KVDKAT EFDKRAPPLAKQA QITQHFIQKAA TG+ LVNEFQT
Sbjct: 61  EKLRIAPDDVLVFLDGKVDKATHEFDKRAPPLAKQAAQITQHFIQKAARTGKELVNEFQT 120

Query: 121 GGPRAAFHYAAKEYKQLVLNQGVKIWAGLNRLPSFHKFADMAVPSAVQWLESYNCKVKDM 180
           GGPRAAFHYAA EYKQLVL+QGVK+WAGLNRLPSFHKFADMAVP+A QWLESYN KVK++
Sbjct: 121 GGPRAAFHYAANEYKQLVLDQGVKMWAGLNRLPSFHKFADMAVPTAAQWLESYNSKVKEL 180

Query: 181 RQKGYYVFDYFPEVPVSEIAKAYKEGEAKTKEEPSPPTPEQAPTEHKPGSDSDSESESET 240
           RQKGY+VFDY PEVPVS+IAKA+K+GEAK KEE SP TPEQAP++++ GSDSDS+S+S +
Sbjct: 181 RQKGYHVFDYCPEVPVSKIAKAFKQGEAKEKEETSPTTPEQAPSKNEAGSDSDSDSDSAS 240

Query: 241 VSVSN 246
           V+  N
Sbjct: 241 VAGPN 245

[Close]

BLAST of Lcy13g000490.1 vs. ExPASy TrEMBL
Match: A0A6J1KCW0 (REF/SRPP-like protein At1g67360 OS=Cucurbita maxima OX=3661 GN=LOC111493158 PE=3 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 8.6e-110
Identity = 211/244 (86.48%), Postives = 223/244 (91.39%), Query Frame = 0


Query: 1   MENESRNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60
           MENE +NLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVV PAY
Sbjct: 1   MENERQNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVAPAY 60

Query: 61  EKLRIAPDDVLVFLDEKVDKATCEFDKRAPPLAKQAVQITQHFIQKAAETGQVLVNEFQT 120
           EKLRIAPDDVLVFLDEKVDKAT EFDKRAPPLAKQAVQITQH IQKAA TGQ LVNEFQT
Sbjct: 61  EKLRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHCIQKAARTGQELVNEFQT 120

Query: 121 GGPRAAFHYAAKEYKQLVLNQGVKIWAGLNRLPSFHKFADMAVPSAVQWLESYNCKVKDM 180
            GPRAAF+YAA  YKQLVL QGVK+WA LNRLPSFHKFADMAVP+A QWLE YNCKVK M
Sbjct: 121 SGPRAAFYYAANGYKQLVLTQGVKVWACLNRLPSFHKFADMAVPTAAQWLEWYNCKVKGM 180

Query: 181 RQKGYYVFDYFPEVPVSEIAKAYKEGEAKTKEEPSPPTPEQAPTEHKPGSDSDSESESET 240
           RQKGY+VFDY PEVP+SEIA+A+K+GEAK KE P P TPEQAP ++KPGSDSDSESESE+
Sbjct: 181 RQKGYHVFDYCPEVPLSEIAEAFKQGEAKKKEAP-PTTPEQAPPKNKPGSDSDSESESES 240

Query: 241 VSVS 245
            SVS
Sbjct: 241 ESVS 243

[Close]

BLAST of Lcy13g000490.1 vs. ExPASy TrEMBL
Match: A0A6J1GYJ5 (REF/SRPP-like protein At1g67360 OS=Cucurbita moschata OX=3662 GN=LOC111458353 PE=3 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 3.3e-109
Identity = 209/244 (85.66%), Postives = 222/244 (90.98%), Query Frame = 0


Query: 1   MENESRNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60
           MENE +NLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVV PAY
Sbjct: 1   MENERQNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVAPAY 60

Query: 61  EKLRIAPDDVLVFLDEKVDKATCEFDKRAPPLAKQAVQITQHFIQKAAETGQVLVNEFQT 120
           EKLRIAPDDVLVFLDEKVDKAT EFDKRAPPLAKQAVQITQH IQKAA TGQ  VNEFQT
Sbjct: 61  EKLRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHCIQKAARTGQEFVNEFQT 120

Query: 121 GGPRAAFHYAAKEYKQLVLNQGVKIWAGLNRLPSFHKFADMAVPSAVQWLESYNCKVKDM 180
            GPRAAF+YAA  YKQLVL QGVK+WA LNRLPSFHKFADMAVP+A QWLE YNCKVKDM
Sbjct: 121 SGPRAAFYYAANGYKQLVLTQGVKVWACLNRLPSFHKFADMAVPTAAQWLERYNCKVKDM 180

Query: 181 RQKGYYVFDYFPEVPVSEIAKAYKEGEAKTKEEPSPPTPEQAPTEHKPGSDSDSESESET 240
           RQKGY+VFDY PEVP+SEIA+A+K+G+AK KE P P TPEQAP ++KPGSDSDSESESE+
Sbjct: 181 RQKGYHVFDYCPEVPLSEIAEAFKQGKAKKKEAP-PTTPEQAPPKNKPGSDSDSESESES 240

Query: 241 VSVS 245
             VS
Sbjct: 241 ELVS 243

[Close]

BLAST of Lcy13g000490.1 vs. NCBI nr
Match: XP_038893091.1 (REF/SRPP-like protein At1g67360 [Benincasa hispida])

HSP 1 Score: 411.4 bits (1056), Expect = 5.5e-111
Identity = 208/241 (86.31%), Postives = 222/241 (92.12%), Query Frame = 0


Query: 1   MENESRNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60
           ME+ES+NLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY
Sbjct: 1   MESESQNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60

Query: 61  EKLRIAPDDVLVFLDEKVDKATCEFDKRAPPLAKQAVQITQHFIQKAAETGQVLVNEFQT 120
           EKLRIAPDDVLVFLDEKVDKAT EFDKRAPPLAKQAVQITQHFIQKAA TGQ LVNEFQT
Sbjct: 61  EKLRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHFIQKAARTGQELVNEFQT 120

Query: 121 GGPRAAFHYAAKEYKQLVLNQGVKIWAGLNRLPSFHKFADMAVPSAVQWLESYNCKVKDM 180
           GGPRAAFHYA  EYKQLVL+Q VKIWAGLNRLPSFHKFADMA+P+  QWLESYNCKVK+M
Sbjct: 121 GGPRAAFHYAGNEYKQLVLDQAVKIWAGLNRLPSFHKFADMALPTTAQWLESYNCKVKEM 180

Query: 181 RQKGYYVFDYFPEVPVSEIAKAYKEGEAKTKEEPSPPTPEQAPTEHKPGSDSDSESESET 240
           RQKGY+VFDY PEVPVS+IAKA+K+ E K KEE  P T EQAP +H+PGSDSDS+S+S  
Sbjct: 181 RQKGYHVFDYCPEVPVSKIAKAFKQDEGKEKEETPPTTSEQAPPKHEPGSDSDSDSDSVA 240

Query: 241 V 242
           V
Sbjct: 241 V 241

[Close]

BLAST of Lcy13g000490.1 vs. NCBI nr
Match: XP_004135320.1 (REF/SRPP-like protein At1g67360 [Cucumis sativus] >XP_004135321.1 REF/SRPP-like protein At1g67360 [Cucumis sativus] >KGN51674.1 hypothetical protein Csa_007931 [Cucumis sativus])

HSP 1 Score: 410.6 bits (1054), Expect = 9.4e-111
Identity = 207/242 (85.54%), Postives = 226/242 (93.39%), Query Frame = 0


Query: 1   MENESRNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60
           ME+ES+NLELKHLGFVR+A+IQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY
Sbjct: 1   MESESQNLELKHLGFVRVALIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60

Query: 61  EKLRIAPDDVLVFLDEKVDKATCEFDKRAPPLAKQAVQITQHFIQKAAETGQVLVNEFQT 120
           EKLRIAPDDVLVFLD KVDKAT EFDKRAPPLAKQA QITQHFIQKAA TGQ LVNEFQT
Sbjct: 61  EKLRIAPDDVLVFLDGKVDKATHEFDKRAPPLAKQAAQITQHFIQKAARTGQQLVNEFQT 120

Query: 121 GGPRAAFHYAAKEYKQLVLNQGVKIWAGLNRLPSFHKFADMAVPSAVQWLESYNCKVKDM 180
           GGPRAAFHYAA EYKQLVL+QGVKIWAGLNRLPSFHKFADMAVP+  QWLESYN KVK++
Sbjct: 121 GGPRAAFHYAANEYKQLVLDQGVKIWAGLNRLPSFHKFADMAVPTTAQWLESYNSKVKEL 180

Query: 181 RQKGYYVFDYFPEVPVSEIAKAYKEGEAKTKEEPSPPTPEQAPTEHKPGSDSDSESESET 240
           RQKGY+VFDY PEVPVSEIAKA+K+ E+K KEE SP TPEQAP++H+ GSDSDS+S+S +
Sbjct: 181 RQKGYHVFDYCPEVPVSEIAKAFKQDESKKKEETSPNTPEQAPSKHEAGSDSDSDSDSAS 240

Query: 241 VS 243
           V+
Sbjct: 241 VA 242

[Close]

BLAST of Lcy13g000490.1 vs. NCBI nr
Match: XP_008446040.1 (PREDICTED: REF/SRPP-like protein At1g67360 [Cucumis melo] >KAA0034195.1 REF/SRPP-like protein [Cucumis melo var. makuwa] >TYK15725.1 REF/SRPP-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 409.8 bits (1052), Expect = 1.6e-110
Identity = 208/245 (84.90%), Postives = 229/245 (93.47%), Query Frame = 0


Query: 1   MENESRNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60
           ME+ES+NLELKHLGFVRIA+IQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY
Sbjct: 1   MESESQNLELKHLGFVRIALIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60

Query: 61  EKLRIAPDDVLVFLDEKVDKATCEFDKRAPPLAKQAVQITQHFIQKAAETGQVLVNEFQT 120
           EKLRIAPDDVLVFLD KVDKAT EFDKRAPPLAKQA QITQHFIQKAA TG+ LVNEFQT
Sbjct: 61  EKLRIAPDDVLVFLDGKVDKATHEFDKRAPPLAKQAAQITQHFIQKAARTGKELVNEFQT 120

Query: 121 GGPRAAFHYAAKEYKQLVLNQGVKIWAGLNRLPSFHKFADMAVPSAVQWLESYNCKVKDM 180
           GGPRAAFHYAA EYKQLVL+QGVK+WAGLNRLPSFHKFADMAVP+A QWLESYN KVK++
Sbjct: 121 GGPRAAFHYAANEYKQLVLDQGVKMWAGLNRLPSFHKFADMAVPTAAQWLESYNSKVKEL 180

Query: 181 RQKGYYVFDYFPEVPVSEIAKAYKEGEAKTKEEPSPPTPEQAPTEHKPGSDSDSESESET 240
           RQKGY+VFDY PEVPVS+IAKA+K+GEAK KEE SP TPEQAP++++ GSDSDS+S+S +
Sbjct: 181 RQKGYHVFDYCPEVPVSKIAKAFKQGEAKEKEETSPTTPEQAPSKNEAGSDSDSDSDSAS 240

Query: 241 VSVSN 246
           V+  N
Sbjct: 241 VAGPN 245

[Close]

BLAST of Lcy13g000490.1 vs. NCBI nr
Match: XP_023541052.1 (REF/SRPP-like protein At1g67360 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 407.1 bits (1045), Expect = 1.0e-109
Identity = 211/244 (86.48%), Postives = 223/244 (91.39%), Query Frame = 0


Query: 1   MENESRNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60
           MENE +NLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVV PAY
Sbjct: 1   MENERQNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVAPAY 60

Query: 61  EKLRIAPDDVLVFLDEKVDKATCEFDKRAPPLAKQAVQITQHFIQKAAETGQVLVNEFQT 120
           EKLRIAPDDVLVFLDEKVDKAT EFDKRAPPLAKQAVQITQH IQKAA TGQ LVNEFQT
Sbjct: 61  EKLRIAPDDVLVFLDEKVDKATNEFDKRAPPLAKQAVQITQHCIQKAAGTGQELVNEFQT 120

Query: 121 GGPRAAFHYAAKEYKQLVLNQGVKIWAGLNRLPSFHKFADMAVPSAVQWLESYNCKVKDM 180
            GPRAAF+YAA  YKQLVL QGVK+WA LNRLPSFHKFADMAVP+A QWLE YNCKVKDM
Sbjct: 121 SGPRAAFYYAANGYKQLVLTQGVKVWACLNRLPSFHKFADMAVPTAAQWLERYNCKVKDM 180

Query: 181 RQKGYYVFDYFPEVPVSEIAKAYKEGEAKTKEEPSPPTPEQAPTEHKPGSDSDSESESET 240
           RQKGY+VFDY PEVP+SEIA+A+K+GEAK KE P P TPEQAP ++ PGSDSDSESESE+
Sbjct: 181 RQKGYHVFDYCPEVPLSEIAEAFKQGEAKKKEAP-PTTPEQAPPKNNPGSDSDSESESES 240

Query: 241 VSVS 245
            SVS
Sbjct: 241 ESVS 243

[Close]

BLAST of Lcy13g000490.1 vs. NCBI nr
Match: XP_022998565.1 (REF/SRPP-like protein At1g67360 [Cucurbita maxima])

HSP 1 Score: 406.4 bits (1043), Expect = 1.8e-109
Identity = 211/244 (86.48%), Postives = 223/244 (91.39%), Query Frame = 0


Query: 1   MENESRNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60
           MENE +NLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVV PAY
Sbjct: 1   MENERQNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVAPAY 60

Query: 61  EKLRIAPDDVLVFLDEKVDKATCEFDKRAPPLAKQAVQITQHFIQKAAETGQVLVNEFQT 120
           EKLRIAPDDVLVFLDEKVDKAT EFDKRAPPLAKQAVQITQH IQKAA TGQ LVNEFQT
Sbjct: 61  EKLRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHCIQKAARTGQELVNEFQT 120

Query: 121 GGPRAAFHYAAKEYKQLVLNQGVKIWAGLNRLPSFHKFADMAVPSAVQWLESYNCKVKDM 180
            GPRAAF+YAA  YKQLVL QGVK+WA LNRLPSFHKFADMAVP+A QWLE YNCKVK M
Sbjct: 121 SGPRAAFYYAANGYKQLVLTQGVKVWACLNRLPSFHKFADMAVPTAAQWLEWYNCKVKGM 180

Query: 181 RQKGYYVFDYFPEVPVSEIAKAYKEGEAKTKEEPSPPTPEQAPTEHKPGSDSDSESESET 240
           RQKGY+VFDY PEVP+SEIA+A+K+GEAK KE P P TPEQAP ++KPGSDSDSESESE+
Sbjct: 181 RQKGYHVFDYCPEVPLSEIAEAFKQGEAKKKEAP-PTTPEQAPPKNKPGSDSDSESESES 240

Query: 241 VSVS 245
            SVS
Sbjct: 241 ESVS 243

[Close]

BLAST of Lcy13g000490.1 vs. TAIR 10
Match: AT1G67360.2 (Rubber elongation factor protein (REF) )

HSP 1 Score: 210.7 bits (535), Expect = 1.3e-54
Identity = 115/240 (47.92%), Postives = 148/240 (61.67%), Query Frame = 0


Query: 1   MENESRN---LELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVT 60
           ME E +N   + LKHL FVRIA I  +  V+NLY+YAKQNSGPL+SAVE VE AV TVVT
Sbjct: 1   METEKKNSKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVT 60

Query: 61  PAYEKLRIAPDDVLVFLDEKVDKATCEFDKRAPPLAKQAVQITQHFIQKAAETGQVLVNE 120
           P Y+K +  PD +LVFLD KV + + +FD+ APP+AK+ V      I KA E  Q  V E
Sbjct: 61  PVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKE 120

Query: 121 FQTGGPRAAFHYAAKEYKQLVLNQGVKIWAGLNRLPSFHKFADMAVPSAVQWLESYNCKV 180
            +TGGP+AAF+YAA EYK  V+   VK+WA LN+    H   D A+P A  +   YN  V
Sbjct: 121 ARTGGPKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLV 180

Query: 181 KDMRQKGYYVFDYFPEVPVSEIAKAYKEGEAKTKEEPSPPTPEQAPTEHKPGSDSDSESE 238
            DM   GY +  Y P VPV +I KAY++ +A+ K+       +   T+   G  S S+SE
Sbjct: 181 TDMTNMGYSLVGYLPLVPVDDIVKAYEKEDARRKKGGDTAGKKGETTDAADGDKSSSDSE 240

[Close]

BLAST of Lcy13g000490.1 vs. TAIR 10
Match: AT1G67360.1 (Rubber elongation factor protein (REF) )

HSP 1 Score: 210.7 bits (535), Expect = 1.3e-54
Identity = 115/240 (47.92%), Postives = 148/240 (61.67%), Query Frame = 0


Query: 1   MENESRN---LELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVT 60
           ME E +N   + LKHL FVRIA I  +  V+NLY+YAKQNSGPL+SAVE VE AV TVVT
Sbjct: 1   METEKKNSKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVT 60

Query: 61  PAYEKLRIAPDDVLVFLDEKVDKATCEFDKRAPPLAKQAVQITQHFIQKAAETGQVLVNE 120
           P Y+K +  PD +LVFLD KV + + +FD+ APP+AK+ V      I KA E  Q  V E
Sbjct: 61  PVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKE 120

Query: 121 FQTGGPRAAFHYAAKEYKQLVLNQGVKIWAGLNRLPSFHKFADMAVPSAVQWLESYNCKV 180
            +TGGP+AAF+YAA EYK  V+   VK+WA LN+    H   D A+P A  +   YN  V
Sbjct: 121 ARTGGPKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLV 180

Query: 181 KDMRQKGYYVFDYFPEVPVSEIAKAYKEGEAKTKEEPSPPTPEQAPTEHKPGSDSDSESE 238
            DM   GY +  Y P VPV +I KAY++ +A+ K+       +   T+   G  S S+SE
Sbjct: 181 TDMTNMGYSLVGYLPLVPVDDIVKAYEKEDARRKKGGDTAGKKGETTDAADGDKSSSDSE 240

[Close]

BLAST of Lcy13g000490.1 vs. TAIR 10
Match: AT3G05500.1 (Rubber elongation factor protein (REF) )

HSP 1 Score: 129.8 bits (325), Expect = 3.0e-30
Identity = 80/217 (36.87%), Postives = 111/217 (51.15%), Query Frame = 0


Query: 10  LKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAYEKLRIAPDD 69
           LK+L FV+ A ++ ++    +Y  AK  SGPL+  VESVE AV TVV P YEK    P +
Sbjct: 22  LKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVE 81

Query: 70  VLVFLDEKVDKATCEFDKRAPPLAKQAVQITQHFIQKAAETGQVLVNEFQTGG------- 129
           VL ++D+KVD +  E D+R PP+ KQ         Q A    + L +E +  G       
Sbjct: 82  VLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVETASG 141

Query: 130 ----PRAAFHYAAKE----YKQLVLNQGVKIWAGLNRLPSFHKFADMAVPSAVQWLESYN 189
                 + +  AAKE    Y+       V  W  LN+LP F + A +AVP+A    E YN
Sbjct: 142 MAKSVYSKYEPAAKELYANYEPKAEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKYN 201

Query: 190 CKVKDMRQKGYYVFDYFPEVPVSEIAKAYKEGEAKTK 212
             V    +KGY V  Y P VP   I+K + E +A+T+
Sbjct: 202 DTVVKAAEKGYRVTSYMPLVPTERISKIFAEEKAETE 238

[Close]

BLAST of Lcy13g000490.1 vs. TAIR 10
Match: AT2G47780.1 (Rubber elongation factor protein (REF) )

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-27
Identity = 63/202 (31.19%), Postives = 104/202 (51.49%), Query Frame = 0


Query: 8   LELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAYEKLRIAP 67
           ++LKHL F+++A +    C + LY+ AK N+GPL+  VE++E  V TV+ P YEK    P
Sbjct: 39  MKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVP 98

Query: 68  DDVLVFLDEKVDKATCEFDKRAPPLAKQAVQITQHFIQKAAETGQVLVNEFQTGGPRAAF 127
             +L+F+D KVD    + +   P L KQA         +   TG V   +      R  +
Sbjct: 99  FKLLLFVDRKVDDVFFDVETYVPSLVKQASSQALTVATEVQRTGVVDTTKSIARSVRDKY 158

Query: 128 HYAAKEYKQLVLNQGVKIWAGLNRLPSFHKFADMAVPSAVQWLESYNCKVKDMRQKGYYV 187
             AA+ Y          +W  LN+LP F + A + +P+A  W E YN  V+ +  + Y+ 
Sbjct: 159 EPAAEYY-------AATLWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYVGDRDYFG 218

Query: 188 FDYFPEVPVSEIAKAYKEGEAK 210
            +Y P +P+ +I+   ++ + +
Sbjct: 219 AEYLPMIPIEKISDILEQDQCR 233

The following BLAST results are available for this feature:

BLAST of Lcy13g000490.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FYF7	1.9e-53	47.92	REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana OX=3702 GN=At1g67360 PE=...	[more]
Q9SW70	6.3e-33	37.38	Stress-related protein OS=Vitis riparia OX=96939 GN=SRP PE=2 SV=1	[more]
Q9MA63	4.2e-29	36.87	REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana OX=3702 GN=At3g05500 PE=...	[more]
O82246	1.5e-26	31.19	REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana OX=3702 GN=At2g47780 PE=...	[more]
A2Y0H2	4.1e-24	31.74	REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_0...	[more]

BLAST of Lcy13g000490.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS04	4.6e-111	85.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589910 PE=3 SV=1	[more]
A0A5D3CW84	7.8e-111	84.90	REF/SRPP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35...	[more]
A0A1S3BEY9	7.8e-111	84.90	REF/SRPP-like protein At1g67360 OS=Cucumis melo OX=3656 GN=LOC103488889 PE=3 SV=...	[more]
A0A6J1KCW0	8.6e-110	86.48	REF/SRPP-like protein At1g67360 OS=Cucurbita maxima OX=3661 GN=LOC111493158 PE=3...	[more]
A0A6J1GYJ5	3.3e-109	85.66	REF/SRPP-like protein At1g67360 OS=Cucurbita moschata OX=3662 GN=LOC111458353 PE...	[more]

BLAST of Lcy13g000490.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893091.1	5.5e-111	86.31	REF/SRPP-like protein At1g67360 [Benincasa hispida]	[more]
XP_004135320.1	9.4e-111	85.54	REF/SRPP-like protein At1g67360 [Cucumis sativus] >XP_004135321.1 REF/SRPP-like ...	[more]
XP_008446040.1	1.6e-110	84.90	PREDICTED: REF/SRPP-like protein At1g67360 [Cucumis melo] >KAA0034195.1 REF/SRPP...	[more]
XP_023541052.1	1.0e-109	86.48	REF/SRPP-like protein At1g67360 isoform X3 [Cucurbita pepo subsp. pepo]	[more]
XP_022998565.1	1.8e-109	86.48	REF/SRPP-like protein At1g67360 [Cucurbita maxima]	[more]

BLAST of Lcy13g000490.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67360.2	1.3e-54	47.92	Rubber elongation factor protein (REF)	[more]
AT1G67360.1	1.3e-54	47.92	Rubber elongation factor protein (REF)	[more]
AT3G05500.1	3.0e-30	36.87	Rubber elongation factor protein (REF)	[more]
AT2G47780.1	1.1e-27	31.19	Rubber elongation factor protein (REF)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008802	Rubber elongation factor	PFAM	PF05755	REF	coord: 6..204 e-value: 4.6E-72 score: 242.1
IPR008802	Rubber elongation factor	PANTHER	PTHR33732	REF/SRPP-LIKE PROTEIN OS05G0151300/LOC_OS05G05940	coord: 1..234
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 205..245
None	No IPR available	PANTHER	PTHR33732:SF2	RUBBER ELONGATION FACTOR PROTEIN	coord: 1..234

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy13g000490	Lcy13g000490	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy13g000490.1.exon3	Lcy13g000490.1.exon3	exon
Lcy13g000490.1.exon2	Lcy13g000490.1.exon2	exon
Lcy13g000490.1.exon1	Lcy13g000490.1.exon1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy13g000490.1.utr3p1	Lcy13g000490.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy13g000490.1.cds2	Lcy13g000490.1.cds2	CDS
Lcy13g000490.1.cds1	Lcy13g000490.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy13g000490.1.utr5p1	Lcy13g000490.1.utr5p1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy13g000490.1	Lcy13g000490.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0080186	developmental vegetative growth
biological_process	GO:0034389	lipid droplet organization
biological_process	GO:0009555	pollen development
biological_process	GO:0045927	positive regulation of growth
biological_process	GO:1902584	positive regulation of response to water deprivation
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005811	lipid droplet