Lcy12g011920.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy12g011920.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr12: 39428678 .. 39429085 (-)
Sequence length	408
RNA-Seq Expression	Lcy12g011920.1
Synteny	Lcy12g011920.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAGCCCTTTTGGAGAGGCTACAGAAACAGAGGTTTTGGAATCAGAGGTCGTAACAATGGTGGATGTAGTTGCAGAGGGGATTACCGTAAAGTGAAGAGGAATTGGAATTGGAATCGGAATCAACAGTCAATTAGGAAGAAGAAGAGTGCTAGTTCGTTTAAAGCTGGAAGAGGGGAATCTCACGGGACTGAGCCTGGATCCTCAGCCGAATCATCGTCATCATCATCTTCATCAGCGGCGGTACCGGAGTCAGGTTATAAACTTCAGTCATACAGGGGAAGAACAAGACGAACGAAACATACAGTATCTATATGCGACTCTAGACTCACAAGCGACCAAGAAGCGACCGTACTTCCCTCCGGCCTCGGCTTCTACTCCGGTCGGGTGGAGCTTCCAAGATGA

mRNA sequence

ATGGCGGAGCCCTTTTGGAGAGGCTACAGAAACAGAGGTTTTGGAATCAGAGGTCGTAACAATGGTGGATGTAGTTGCAGAGGGGATTACCGTAAAGTGAAGAGGAATTGGAATTGGAATCGGAATCAACAGTCAATTAGGAAGAAGAAGAGTGCTAGTTCGTTTAAAGCTGGAAGAGGGGAATCTCACGGGACTGAGCCTGGATCCTCAGCCGAATCATCGTCATCATCATCTTCATCAGCGGCGGTACCGGAGTCAGGTTATAAACTTCAGTCATACAGGGGAAGAACAAGACGAACGAAACATACAGTATCTATATGCGACTCTAGACTCACAAGCGACCAAGAAGCGACCGTACTTCCCTCCGGCCTCGGCTTCTACTCCGGTCGGGTGGAGCTTCCAAGATGA

Coding sequence (CDS)

ATGGCGGAGCCCTTTTGGAGAGGCTACAGAAACAGAGGTTTTGGAATCAGAGGTCGTAACAATGGTGGATGTAGTTGCAGAGGGGATTACCGTAAAGTGAAGAGGAATTGGAATTGGAATCGGAATCAACAGTCAATTAGGAAGAAGAAGAGTGCTAGTTCGTTTAAAGCTGGAAGAGGGGAATCTCACGGGACTGAGCCTGGATCCTCAGCCGAATCATCGTCATCATCATCTTCATCAGCGGCGGTACCGGAGTCAGGTTATAAACTTCAGTCATACAGGGGAAGAACAAGACGAACGAAACATACAGTATCTATATGCGACTCTAGACTCACAAGCGACCAAGAAGCGACCGTACTTCCCTCCGGCCTCGGCTTCTACTCCGGTCGGGTGGAGCTTCCAAGATGA

Protein sequence

MAEPFWRGYRNRGFGIRGRNNGGCSCRGDYRKVKRNWNWNRNQQSIRKKKSASSFKAGRGESHGTEPGSSAESSSSSSSSAAVPESGYKLQSYRGRTRRTKHTVSICDSRLTSDQEATVLPSGLGFYSGRVELPR

Homology

[Close]

BLAST of Lcy12g011920.1 vs. NCBI nr
Match: KAG6607904.1 (Transcription factor TCP4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 108.6 bits (270), Expect = 4.2e-20
Identity = 66/86 (76.74%), Postives = 68/86 (79.07%), Query Frame = 0


Query: 1  MAEPFWRGYRNRGFGIRGRNNGGCSCRGDYRKVKRNWNWNRNQQSIRKKKSASSFKAGRG 60
          MAEPFWRGY N GF IR RNNGG + RGDYRK+K      RNQQSIRKK S SSFKAGRG
Sbjct: 1  MAEPFWRGYTNAGFRIRARNNGGSTFRGDYRKLK------RNQQSIRKKSSVSSFKAGRG 60

Query: 61 ESHGTEPGSSAESSSSSSSSAAVPES 87
          ESHGT PGSSAESSSSSSS  A PES
Sbjct: 61 ESHGTGPGSSAESSSSSSS--AEPES 78

[Close]

BLAST of Lcy12g011920.1 vs. NCBI nr
Match: KAG7037433.1 (Transcription factor TCP4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 108.6 bits (270), Expect = 4.2e-20
Identity = 66/86 (76.74%), Postives = 68/86 (79.07%), Query Frame = 0


Query: 1  MAEPFWRGYRNRGFGIRGRNNGGCSCRGDYRKVKRNWNWNRNQQSIRKKKSASSFKAGRG 60
          MAEPFWRGY N GF IR RNNGG + RGDYRK+K      RNQQSIRKK S SSFKAGRG
Sbjct: 1  MAEPFWRGYTNAGFRIRARNNGGSTFRGDYRKLK------RNQQSIRKKSSVSSFKAGRG 60

Query: 61 ESHGTEPGSSAESSSSSSSSAAVPES 87
          ESHGT PGSSAESSSSSSS  A PES
Sbjct: 61 ESHGTGPGSSAESSSSSSS--AEPES 78

[Close]

BLAST of Lcy12g011920.1 vs. NCBI nr
Match: KAG6591924.1 (Transcription factor TCP4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.6 bits (166), Expect = 4.9e-08
Identity = 51/89 (57.30%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 1  MAEPFWRGYRNRGFGIRGRNNGGCSCRGDYRKVKRNWNWNRNQQSIRKKKSASSFKAGRG 60
          MAE FWRG+         R NGG SCR  YRKVKRN N NRNQQSI         +AGRG
Sbjct: 1  MAETFWRGF---------RINGGFSCRSHYRKVKRNRNRNRNQQSI---------QAGRG 60

Query: 61 ESHGTEPGSSAES---SSSSSSSAAVPES 87
           S G+E GS + S   SSSSSSS+AVPES
Sbjct: 61 VSQGSESGSRSSSSPPSSSSSSSSAVPES 71

The following BLAST results are available for this feature:

BLAST of Lcy12g011920.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g011920.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g011920.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607904.1	4.2e-20	76.74	Transcription factor TCP4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7037433.1	4.2e-20	76.74	Transcription factor TCP4, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6591924.1	4.9e-08	57.30	Transcription factor TCP4, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lcy12g011920.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..51

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy12g011920	Lcy12g011920	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy12g011920.1.exon1	Lcy12g011920.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy12g011920.1.cds1	Lcy12g011920.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy12g011920.1	Lcy12g011920.1-protein	polypeptide