Lcy11g013300.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy11g013300.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	ATP-dependent DNA helicase
Location	Chr11: 20843135 .. 20843479 (+)
Sequence length	345
RNA-Seq Expression	Lcy11g013300.1
Synteny	Lcy11g013300.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGCTCAAAGTGACAACCAATTTGCAGAATATCTCTTAAAGATTGGCAATGGAACTGAACAATCAACAGAAGATGATTATATTTTCCTTCCAGACAGTATTATTGTTACAGGTGAAAACGACGAAGATGCAGTATTTAAGTTATCGAATATTGTTTATCTTGATCTTAAAAAAAATGCAACTTCAGCACAATACATGACAAACAGGGCAATTCTATCAACTACAAACGAGTATGTTGACCAGATCAACGAGAAAATGATTGAACTATTTCCAGGACAAATTGAAGAGTACATGAGTTTCGATGAGGCCATTGATGACACACATAACTATTATCAAGAATAA

mRNA sequence

ATGAGAGCTCAAAGTGACAACCAATTTGCAGAATATCTCTTAAAGATTGGCAATGGAACTGAACAATCAACAGAAGATGATTATATTTTCCTTCCAGACAGTATTATTGTTACAGGTGAAAACGACGAAGATGCAGTATTTAAGTTATCGAATATTGTTTATCTTGATCTTAAAAAAAATGCAACTTCAGCACAATACATGACAAACAGGGCAATTCTATCAACTACAAACGAGTATGTTGACCAGATCAACGAGAAAATGATTGAACTATTTCCAGGACAAATTGAAGAGTACATGAGTTTCGATGAGGCCATTGATGACACACATAACTATTATCAAGAATAA

Coding sequence (CDS)

ATGAGAGCTCAAAGTGACAACCAATTTGCAGAATATCTCTTAAAGATTGGCAATGGAACTGAACAATCAACAGAAGATGATTATATTTTCCTTCCAGACAGTATTATTGTTACAGGTGAAAACGACGAAGATGCAGTATTTAAGTTATCGAATATTGTTTATCTTGATCTTAAAAAAAATGCAACTTCAGCACAATACATGACAAACAGGGCAATTCTATCAACTACAAACGAGTATGTTGACCAGATCAACGAGAAAATGATTGAACTATTTCCAGGACAAATTGAAGAGTACATGAGTTTCGATGAGGCCATTGATGACACACATAACTATTATCAAGAATAA

Protein sequence

MRAQSDNQFAEYLLKIGNGTEQSTEDDYIFLPDSIIVTGENDEDAVFKLSNIVYLDLKKNATSAQYMTNRAILSTTNEYVDQINEKMIELFPGQIEEYMSFDEAIDDTHNYYQE

Homology

[Close]

BLAST of Lcy11g013300.1 vs. ExPASy TrEMBL
Match: A0A6J1DFU4 (ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111020055 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.6e-42
Identity = 89/114 (78.07%), Postives = 100/114 (87.72%), Query Frame = 0


Query: 1   MRAQSDNQFAEYLLKIGNGTEQSTEDDYIFLPDSIIVTGENDEDAVFKLSNIVYLDLKKN 60
           MRA SD+QFAEYLLKIGNGTE S EDDYI L D I +TGENDE A+ KL N+VY DL++N
Sbjct: 73  MRAHSDSQFAEYLLKIGNGTEPSVEDDYICLTDDITITGENDEGAIMKLLNVVYPDLEQN 132

Query: 61  ATSAQYMTNRAILSTTNEYVDQINEKMIELFPGQIEEYMSFDEAIDDTHNYYQE 115
           ATS++YMTNR ILSTTNEYVDQINEKMI+LFPG+  E+MSFDEAIDDTHNYYQE
Sbjct: 133 ATSSEYMTNRVILSTTNEYVDQINEKMIQLFPGKFFEFMSFDEAIDDTHNYYQE 186

[Close]

BLAST of Lcy11g013300.1 vs. ExPASy TrEMBL
Match: A0A6J1E1J0 (ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111025574 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.6e-37
Identity = 83/114 (72.81%), Postives = 94/114 (82.46%), Query Frame = 0


Query: 1   MRAQSDNQFAEYLLKIGNGTEQSTEDDYIFLPDSIIVTGENDEDAVFKLSNIVYLDLKKN 60
           MRAQ+D QFAEYLLKIGNGTE S  +DY+ LP  I +  E  ED+V KL NIVY DL +N
Sbjct: 1   MRAQNDYQFAEYLLKIGNGTEPSIVEDYVRLPKDIAIIDEGHEDSVLKLLNIVYPDLPQN 60

Query: 61  ATSAQYMTNRAILSTTNEYVDQINEKMIELFPGQIEEYMSFDEAIDDTHNYYQE 115
           A SA+Y+TNRAILSTTNEYVD+IN KMI LFPG IEE+MSFDEAIDDTH+YYQE
Sbjct: 61  AMSAEYITNRAILSTTNEYVDEINNKMIRLFPGNIEEFMSFDEAIDDTHSYYQE 114

[Close]

BLAST of Lcy11g013300.1 vs. ExPASy TrEMBL
Match: A0A6J1DMF2 (ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111022374 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 6.5e-36
Identity = 81/114 (71.05%), Postives = 92/114 (80.70%), Query Frame = 0


Query: 1   MRAQSDNQFAEYLLKIGNGTEQSTEDDYIFLPDSIIVTGENDEDAVFKLSNIVYLDLKKN 60
           MRAQ+D QFAEYLLKIGNGTE S  +DY+ LP  I +  E  ED+V KL NIVY DL +N
Sbjct: 135 MRAQNDYQFAEYLLKIGNGTEPSIVEDYVRLPKDIAIIDEGHEDSVLKLLNIVYPDLPQN 194

Query: 61  ATSAQYMTNRAILSTTNEYVDQINEKMIELFPGQIEEYMSFDEAIDDTHNYYQE 115
           A SA+Y+TNRAILSTTNEYVD+IN KMI LF G IEE+MSFDE IDDTH+YYQE
Sbjct: 195 AMSAEYITNRAILSTTNEYVDEINNKMIRLFLGNIEEFMSFDETIDDTHSYYQE 248

[Close]

BLAST of Lcy11g013300.1 vs. ExPASy TrEMBL
Match: A0A5B7A9C3 (ATP-dependent DNA helicase OS=Davidia involucrata OX=16924 GN=Din_021512 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.0e-28
Identity = 63/114 (55.26%), Postives = 88/114 (77.19%), Query Frame = 0


Query: 1    MRAQSDNQFAEYLLKIGNGTEQSTEDDYIFLPDSIIVTGENDEDAVFKLSNIVYLDLKKN 60
            MRA++D  F+++LL++GNG E +   D I +PD +++  ENDE +  KL + +Y  L++N
Sbjct: 1213 MRARADPNFSDFLLRVGNGEEPTNNQDMILIPDQMVIKYENDEVSEQKLIDDIYPSLEQN 1272

Query: 61   ATSAQYMTNRAILSTTNEYVDQINEKMIELFPGQIEEYMSFDEAIDDTHNYYQE 115
            A SA+YMT RAIL+T NEYVD++NEK+IE+FPG +  + SFDEAIDDTHNYYQE
Sbjct: 1273 AKSAEYMTKRAILATKNEYVDKLNEKLIEMFPGDVRTFNSFDEAIDDTHNYYQE 1326

[Close]

BLAST of Lcy11g013300.1 vs. ExPASy TrEMBL
Match: A0A5B7A5M4 (ATP-dependent DNA helicase (Fragment) OS=Davidia involucrata OX=16924 GN=Din_021511 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.3e-28
Identity = 63/114 (55.26%), Postives = 88/114 (77.19%), Query Frame = 0


Query: 1   MRAQSDNQFAEYLLKIGNGTEQSTEDDYIFLPDSIIVTGENDEDAVFKLSNIVYLDLKKN 60
           MRA++D  F+++LL++GNG E +   D I +PD +++  ENDE +  KL + +Y  L++N
Sbjct: 187 MRARADPNFSDFLLRVGNGEEPTNNQDMILIPDQMVIKYENDEVSEQKLIDDIYPFLEQN 246

Query: 61  ATSAQYMTNRAILSTTNEYVDQINEKMIELFPGQIEEYMSFDEAIDDTHNYYQE 115
           A SA+YMT RAIL+T NEYVD++NEK+IE+FPG +  + SFDEAIDDTHNYYQE
Sbjct: 247 AKSAEYMTKRAILATKNEYVDKLNEKLIEMFPGDVRTFNSFDEAIDDTHNYYQE 300

[Close]

BLAST of Lcy11g013300.1 vs. NCBI nr
Match: XP_022152307.1 (ATP-dependent DNA helicase PIF1-like [Momordica charantia])

HSP 1 Score: 181.8 bits (460), Expect = 3.3e-42
Identity = 89/114 (78.07%), Postives = 100/114 (87.72%), Query Frame = 0


Query: 1   MRAQSDNQFAEYLLKIGNGTEQSTEDDYIFLPDSIIVTGENDEDAVFKLSNIVYLDLKKN 60
           MRA SD+QFAEYLLKIGNGTE S EDDYI L D I +TGENDE A+ KL N+VY DL++N
Sbjct: 73  MRAHSDSQFAEYLLKIGNGTEPSVEDDYICLTDDITITGENDEGAIMKLLNVVYPDLEQN 132

Query: 61  ATSAQYMTNRAILSTTNEYVDQINEKMIELFPGQIEEYMSFDEAIDDTHNYYQE 115
           ATS++YMTNR ILSTTNEYVDQINEKMI+LFPG+  E+MSFDEAIDDTHNYYQE
Sbjct: 133 ATSSEYMTNRVILSTTNEYVDQINEKMIQLFPGKFFEFMSFDEAIDDTHNYYQE 186

[Close]

BLAST of Lcy11g013300.1 vs. NCBI nr
Match: XP_031737538.1 (uncharacterized protein LOC116402430 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 3.3e-42
Identity = 90/114 (78.95%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 1   MRAQSDNQFAEYLLKIGNGTEQSTEDDYIFLPDSIIVTGENDEDAVFKLSNIVYLDLKKN 60
           MRAQSD +FAEYLLKIGN TE STEDDYI LP +IIVTG N+ED++ KL NIVY DLK +
Sbjct: 73  MRAQSDTRFAEYLLKIGNRTELSTEDDYICLPANIIVTGANEEDSILKLLNIVYPDLKTH 132

Query: 61  ATSAQYMTNRAILSTTNEYVDQINEKMIELFPGQIEEYMSFDEAIDDTHNYYQE 115
            TSA+YMTNRAILSTTNEYVDQINE+MIE+FPG++EE+MSFDEAIDDTHNYY E
Sbjct: 133 TTSAEYMTNRAILSTTNEYVDQINERMIEMFPGKMEEFMSFDEAIDDTHNYYHE 186

[Close]

BLAST of Lcy11g013300.1 vs. NCBI nr
Match: XP_022159149.1 (ATP-dependent DNA helicase PIF1-like [Momordica charantia])

HSP 1 Score: 165.2 bits (417), Expect = 3.2e-37
Identity = 83/114 (72.81%), Postives = 94/114 (82.46%), Query Frame = 0


Query: 1   MRAQSDNQFAEYLLKIGNGTEQSTEDDYIFLPDSIIVTGENDEDAVFKLSNIVYLDLKKN 60
           MRAQ+D QFAEYLLKIGNGTE S  +DY+ LP  I +  E  ED+V KL NIVY DL +N
Sbjct: 1   MRAQNDYQFAEYLLKIGNGTEPSIVEDYVRLPKDIAIIDEGHEDSVLKLLNIVYPDLPQN 60

Query: 61  ATSAQYMTNRAILSTTNEYVDQINEKMIELFPGQIEEYMSFDEAIDDTHNYYQE 115
           A SA+Y+TNRAILSTTNEYVD+IN KMI LFPG IEE+MSFDEAIDDTH+YYQE
Sbjct: 61  AMSAEYITNRAILSTTNEYVDEINNKMIRLFPGNIEEFMSFDEAIDDTHSYYQE 114

[Close]

BLAST of Lcy11g013300.1 vs. NCBI nr
Match: XP_022155233.1 (ATP-dependent DNA helicase PIF1-like [Momordica charantia])

HSP 1 Score: 159.8 bits (403), Expect = 1.4e-35
Identity = 81/114 (71.05%), Postives = 92/114 (80.70%), Query Frame = 0


Query: 1   MRAQSDNQFAEYLLKIGNGTEQSTEDDYIFLPDSIIVTGENDEDAVFKLSNIVYLDLKKN 60
           MRAQ+D QFAEYLLKIGNGTE S  +DY+ LP  I +  E  ED+V KL NIVY DL +N
Sbjct: 135 MRAQNDYQFAEYLLKIGNGTEPSIVEDYVRLPKDIAIIDEGHEDSVLKLLNIVYPDLPQN 194

Query: 61  ATSAQYMTNRAILSTTNEYVDQINEKMIELFPGQIEEYMSFDEAIDDTHNYYQE 115
           A SA+Y+TNRAILSTTNEYVD+IN KMI LF G IEE+MSFDE IDDTH+YYQE
Sbjct: 195 AMSAEYITNRAILSTTNEYVDEINNKMIRLFLGNIEEFMSFDETIDDTHSYYQE 248

[Close]

BLAST of Lcy11g013300.1 vs. NCBI nr
Match: XP_004136446.2 (ATP-dependent DNA helicase PIF1-like [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 2.6e-31
Identity = 74/99 (74.75%), Postives = 83/99 (83.84%), Query Frame = 0


Query: 16  IGNGTEQSTEDDYIFLPDSIIVTGENDEDAVFKLSNIVYLDLKKNATSAQYMTNRAILST 75
           IGNGTE STEDDYI LP +I VTG N+ED++ KL NIVY DLK +ATSA YMT+RAILST
Sbjct: 56  IGNGTEMSTEDDYICLPSNITVTGANEEDSILKLLNIVYADLKTHATSANYMTSRAILST 115

Query: 76  TNEYVDQINEKMIELFPGQIEEYMSFDEAIDDTHNYYQE 115
           TNEYVDQI+E+MIELFP      MS+DEAIDDTHNYYQE
Sbjct: 116 TNEYVDQISERMIELFPSS----MSYDEAIDDTHNYYQE 150

[Close]

BLAST of Lcy11g013300.1 vs. TAIR 10
Match: AT5G28780.1 (PIF1 helicase )

HSP 1 Score: 40.8 bits (94), Expect = 8.5e-04
Identity = 25/84 (29.76%), Postives = 42/84 (50.00%), Query Frame = 0


Query: 17  GNGTEQSTEDDYIFLPDSIIVTGENDEDAVFKLSNIVYLDLKKNATSAQYMTNRAILSTT 76
           GN     T+D  +   D+      N  + + +++   Y+    +  + QY+T R IL+  
Sbjct: 66  GNAPTCETDDGEVVEMDTSFFLKHNG-NRLQQVTKGAYVQFSVSQPNFQYLTERGILTPH 125

Query: 77  NEYVDQINEKMIELFPGQIEEYMS 101
           NEYVD+IN  M+    G  +EY+S
Sbjct: 126 NEYVDEINAYMLSQVGGDSKEYLS 148

The following BLAST results are available for this feature:

BLAST of Lcy11g013300.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g013300.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DFU4	1.6e-42	78.07	ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111020055 PE=3 S...	[more]
A0A6J1E1J0	1.6e-37	72.81	ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111025574 PE=3 S...	[more]
A0A6J1DMF2	6.5e-36	71.05	ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111022374 PE=3 S...	[more]
A0A5B7A9C3	1.0e-28	55.26	ATP-dependent DNA helicase OS=Davidia involucrata OX=16924 GN=Din_021512 PE=3 SV...	[more]
A0A5B7A5M4	2.3e-28	55.26	ATP-dependent DNA helicase (Fragment) OS=Davidia involucrata OX=16924 GN=Din_021...	[more]

BLAST of Lcy11g013300.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152307.1	3.3e-42	78.07	ATP-dependent DNA helicase PIF1-like [Momordica charantia]	[more]
XP_031737538.1	3.3e-42	78.95	uncharacterized protein LOC116402430 [Cucumis sativus]	[more]
XP_022159149.1	3.2e-37	72.81	ATP-dependent DNA helicase PIF1-like [Momordica charantia]	[more]
XP_022155233.1	1.4e-35	71.05	ATP-dependent DNA helicase PIF1-like [Momordica charantia]	[more]
XP_004136446.2	2.6e-31	74.75	ATP-dependent DNA helicase PIF1-like [Cucumis sativus]	[more]

BLAST of Lcy11g013300.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G28780.1	8.5e-04	29.76	PIF1 helicase	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010285	DNA helicase Pif1-like	PFAM	PF05970	PIF1	coord: 5..109 e-value: 7.7E-20 score: 71.4
None	No IPR available	PANTHER	PTHR10492	UNCHARACTERIZED	coord: 1..113
None	No IPR available	PANTHER	PTHR10492:SF76	ATP-DEPENDENT DNA HELICASE	coord: 1..113

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy11g013300	Lcy11g013300	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy11g013300.1.exon1	Lcy11g013300.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy11g013300.1.cds1	Lcy11g013300.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy11g013300.1	Lcy11g013300.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0000723	telomere maintenance
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0006310	DNA recombination
molecular_function	GO:0003678	DNA helicase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity