Lcy10g001790.1 (mRNA) Sponge gourd (P93075) v1

Overview
NameLcy10g001790.1
TypemRNA
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr10: 2087868 .. 2088415 (-)
Sequence length249
RNA-Seq ExpressionLcy10g001790.1
SyntenyLcy10g001790.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTGGCTGCAAGTGTGGTGACAATTGCTCCTGTGGAGATAGCTGCAATTGCCTCTCTGGGTCTCTCTCATCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTTTTTTTATTCATTTTGTTTTTGAAGATTTAGAGGAGAAAATTTGTTAGAAAACGTTCAAATCTTTTAACTTGTTACATTATTTTTTTAAGGTTAACTTGTCTTTTCTTTTTCGCTCCATTATTTTTGTTGATTGAATTTTTACATTTTTTTTTAATCTTTGCAGGAACATCAAAGAGGCCACCTCCCTTGTCAACATGTATGTAAATGAATCTAATAAGTAACTTTTTAATCTTTTTGAAAAATTTAACTTTAATAGTTATACAAGTACTACAGTAGTATTAGAAATTTTTCGTTCAACGTCGATCATGTGCAGGAACAACGGTTGTGACTGCTGCGACAGCAGCTGCTCCTGCGACGCATGCAGCTGCTGCTGAGCAACTGAAGAAATGGATGAGGCCCTCAAACAACAAAACTTGTGAAATGGAATAA

mRNA sequence

ATGGCTTCTGGCTGCAAGTGTGGTGACAATTGCTCCTGTGGAGATAGCTGCAATTGCCTCTCTGGGAACATCAAAGAGGCCACCTCCCTTGTCAACATGTATAAATTTTTCGTTCAACGTCGATCATGTGCAGGAACAACGGTTGTGACTGCTGCGACAGCAGCTGCTCCTGCGACGCATGCAGCTGCTGCTGAGCAACTGAAGAAATGGATGAGGCCCTCAAACAACAAAACTTGTGAAATGGAATAA

Coding sequence (CDS)

ATGGCTTCTGGCTGCAAGTGTGGTGACAATTGCTCCTGTGGAGATAGCTGCAATTGCCTCTCTGGGAACATCAAAGAGGCCACCTCCCTTGTCAACATGTATAAATTTTTCGTTCAACGTCGATCATGTGCAGGAACAACGGTTGTGACTGCTGCGACAGCAGCTGCTCCTGCGACGCATGCAGCTGCTGCTGAGCAACTGAAGAAATGGATGAGGCCCTCAAACAACAAAACTTGTGAAATGGAATAA

Protein sequence

MASGCKCGDNCSCGDSCNCLSGNIKEATSLVNMYKFFVQRRSCAGTTVVTAATAAAPATHAAAAEQLKKWMRPSNNKTCEME
Homology
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BLAST of Lcy10g001790.1 vs. NCBI nr
Match: KAG7019194.1 (hypothetical protein SDJN02_18152 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 80.5 bits (197), Expect = 7.5e-12
Identity = 45/70 (64.29%), Postives = 50/70 (71.43%), Query Frame = 0 

Query: 1  MASGCKCGDNCSCGDSCNCLSGNIKEATSLVNMYKFFVQRRSCAGTTVVTAATAAAPATH 60
          MASGCKCGDNCSCGDSCNCLSG +KE TSL+NMY   V R     T   TAATAAA  T 
Sbjct: 1  MASGCKCGDNCSCGDSCNCLSGTVKETTSLINMY---VNR-----TMGATAATAAARVTG 60

Query: 61 AAAAEQLKKW 71
           AAA++  +W
Sbjct: 61 VAAADERARW 62

The following BLAST results are available for this feature:
BLAST of Lcy10g001790.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy10g001790.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy10g001790.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019194.17.5e-1264.29hypothetical protein SDJN02_18152 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Lcy10g001790.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lcy10g001790Lcy10g001790gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy10g001790.1.exon3Lcy10g001790.1.exon3exon
Lcy10g001790.1.exon2Lcy10g001790.1.exon2exon
Lcy10g001790.1.exon1Lcy10g001790.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy10g001790.1.cds3Lcy10g001790.1.cds3CDS
Lcy10g001790.1.cds2Lcy10g001790.1.cds2CDS
Lcy10g001790.1.cds1Lcy10g001790.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lcy10g001790.1Lcy10g001790.1-proteinpolypeptide