Lcy09g017240.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy09g017240.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	ATP-dependent DNA helicase
Location	Chr09: 33310790 .. 33311153 (+)
Sequence length	336
RNA-Seq Expression	Lcy09g017240.1
Synteny	Lcy09g017240.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGTGAGTGTTTAGTTAAGTTTTGCTCTAGATGACAATGAATTTGTAGAGTACCCACTAAAAATCGGAAATGAGATTGAAACAACGATCAAAGAAGATTTCATTTGCATTCCAAAAAACATAGTAATAACAAGCAAATATCGTTCAGCAGAACTACATTTGATTGATTTTCTTTTTTCGGATTTAGCTAAAAAGGCAAGCTCGGTAGAATATGTCATCCAAAGTGCAATCCTCTCAACTATAAATAAATATGTTGATCATATCGATGCAAAAATGATAGAGATCTTTCATGAAGAAGCCAAAGAATCCATGAGCTTTGATGAAGCTACTGATGATACAAATAGTTACTACCAACAGTAA

mRNA sequence

ATGGAGAATGACAATGAATTTGTAGAGTACCCACTAAAAATCGGAAATGAGATTGAAACAACGATCAAAGAAGATTTCATTTGCATTCCAAAAAACATAGTAATAACAAGCAAATATCGTTCAGCAGAACTACATTTGATTGATTTTCTTTTTTCGGATTTAGCTAAAAAGGCAAGCTCGGTAGAATATGTCATCCAAAGTGCAATCCTCTCAACTATAAATAAATATGTTGATCATATCGATGCAAAAATGATAGAGATCTTTCATGAAGAAGCCAAAGAATCCATGAGCTTTGATGAAGCTACTGATGATACAAATAGTTACTACCAACAGTAA

Coding sequence (CDS)

ATGGAGAATGACAATGAATTTGTAGAGTACCCACTAAAAATCGGAAATGAGATTGAAACAACGATCAAAGAAGATTTCATTTGCATTCCAAAAAACATAGTAATAACAAGCAAATATCGTTCAGCAGAACTACATTTGATTGATTTTCTTTTTTCGGATTTAGCTAAAAAGGCAAGCTCGGTAGAATATGTCATCCAAAGTGCAATCCTCTCAACTATAAATAAATATGTTGATCATATCGATGCAAAAATGATAGAGATCTTTCATGAAGAAGCCAAAGAATCCATGAGCTTTGATGAAGCTACTGATGATACAAATAGTTACTACCAACAGTAA

Protein sequence

MENDNEFVEYPLKIGNEIETTIKEDFICIPKNIVITSKYRSAELHLIDFLFSDLAKKASSVEYVIQSAILSTINKYVDHIDAKMIEIFHEEAKESMSFDEATDDTNSYYQQ

Homology

[Close]

BLAST of Lcy09g017240.1 vs. ExPASy TrEMBL
Match: A0A6J1E1J0 (ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111025574 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.6e-18
Identity = 54/111 (48.65%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 2   ENDNEFVEYPLKIGNEIETTIKEDFICIPKNI-VITSKYRSAELHLIDFLFSDLAKKASS 61
           +ND +F EY LKIGN  E +I ED++ +PK+I +I   +  + L L++ ++ DL + A S
Sbjct: 4   QNDYQFAEYLLKIGNGTEPSIVEDYVRLPKDIAIIDEGHEDSVLKLLNIVYPDLPQNAMS 63

Query: 62  VEYVIQSAILSTINKYVDHIDAKMIEIFHEEAKESMSFDEATDDTNSYYQQ 112
            EY+   AILST N+YVD I+ KMI +F    +E MSFDEA DDT+SYYQ+
Sbjct: 64  AEYITNRAILSTTNEYVDEINNKMIRLFPGNIEEFMSFDEAIDDTHSYYQE 114

[Close]

BLAST of Lcy09g017240.1 vs. ExPASy TrEMBL
Match: A0A6J1DMF2 (ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111022374 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 6.0e-18
Identity = 53/111 (47.75%), Postives = 75/111 (67.57%), Query Frame = 0


Query: 2   ENDNEFVEYPLKIGNEIETTIKEDFICIPKNI-VITSKYRSAELHLIDFLFSDLAKKASS 61
           +ND +F EY LKIGN  E +I ED++ +PK+I +I   +  + L L++ ++ DL + A S
Sbjct: 138 QNDYQFAEYLLKIGNGTEPSIVEDYVRLPKDIAIIDEGHEDSVLKLLNIVYPDLPQNAMS 197

Query: 62  VEYVIQSAILSTINKYVDHIDAKMIEIFHEEAKESMSFDEATDDTNSYYQQ 112
            EY+   AILST N+YVD I+ KMI +F    +E MSFDE  DDT+SYYQ+
Sbjct: 198 AEYITNRAILSTTNEYVDEINNKMIRLFLGNIEEFMSFDETIDDTHSYYQE 248

[Close]

BLAST of Lcy09g017240.1 vs. ExPASy TrEMBL
Match: A0A6J1DFU4 (ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111020055 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 8.7e-17
Identity = 50/110 (45.45%), Postives = 77/110 (70.00%), Query Frame = 0


Query: 3   NDNEFVEYPLKIGNEIETTIKEDFICIPKNIVITSKY-RSAELHLIDFLFSDLAKKASSV 62
           +D++F EY LKIGN  E ++++D+IC+  +I IT +    A + L++ ++ DL + A+S 
Sbjct: 77  SDSQFAEYLLKIGNGTEPSVEDDYICLTDDITITGENDEGAIMKLLNVVYPDLEQNATSS 136

Query: 63  EYVIQSAILSTINKYVDHIDAKMIEIFHEEAKESMSFDEATDDTNSYYQQ 112
           EY+    ILST N+YVD I+ KMI++F  +  E MSFDEA DDT++YYQ+
Sbjct: 137 EYMTNRVILSTTNEYVDQINEKMIQLFPGKFFEFMSFDEAIDDTHNYYQE 186

[Close]

BLAST of Lcy09g017240.1 vs. ExPASy TrEMBL
Match: A0A1U8FVC0 (ATP-dependent DNA helicase OS=Capsicum annuum OX=4072 GN=LOC107859243 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.6e-15
Identity = 48/108 (44.44%), Postives = 72/108 (66.67%), Query Frame = 0


Query: 4   DNEFVEYPLKIGNEIETTIKEDFICIPKNIVITSKYRSAELHLIDFLFSDLAKKASSVEY 63
           D  F E+ L+IGN  E TIK+D +  PK +VI +K  + E  L+D +FS L K A+  +Y
Sbjct: 267 DPPFSEFLLRIGNGEEPTIKDDLVLFPKQLVIENKSSTGEDALLDQIFSSLDKNATCAKY 326

Query: 64  VIQSAILSTINKYVDHIDAKMIEIFHEEAKESMSFDEATDDTNSYYQQ 112
           + + AIL++ NKYVD ++  +I  F +E+K  +SF+ A DDTN+YYQ+
Sbjct: 327 MTERAILASRNKYVDQLNEMLISRFSDESKTFLSFNSAEDDTNNYYQE 374

[Close]

BLAST of Lcy09g017240.1 vs. ExPASy TrEMBL
Match: A0A6A6KMX4 (ATP-dependent DNA helicase OS=Hevea brasiliensis OX=3981 GN=GH714_010361 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.4e-13
Identity = 48/109 (44.04%), Postives = 71/109 (65.14%), Query Frame = 0


Query: 4   DNEFVEYPLKIGNEIETTIKEDFICIPKNIVITSK-YRSAELHLIDFLFSDLAKKASSVE 63
           D  F ++ L++GNE + T  +D I I + +V+  +   S E  LID +F    +  S VE
Sbjct: 281 DKYFGDFLLRVGNEEQPTSDDDLIIILEQMVVKHRDEESCEEELIDAVFPSSKENWSLVE 340

Query: 64  YVIQSAILSTINKYVDHIDAKMIEIFHEEAKESMSFDEATDDTNSYYQQ 112
           Y+ + AIL+T N+YVD ++ KMI+IF +E+K   SFDEA DDTN+YYQ+
Sbjct: 341 YMTKRAILATTNEYVDKLNQKMIQIFPKESKIFASFDEAVDDTNNYYQE 389

[Close]

BLAST of Lcy09g017240.1 vs. NCBI nr
Match: XP_022159149.1 (ATP-dependent DNA helicase PIF1-like [Momordica charantia])

HSP 1 Score: 102.1 bits (253), Expect = 3.3e-18
Identity = 54/111 (48.65%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 2   ENDNEFVEYPLKIGNEIETTIKEDFICIPKNI-VITSKYRSAELHLIDFLFSDLAKKASS 61
           +ND +F EY LKIGN  E +I ED++ +PK+I +I   +  + L L++ ++ DL + A S
Sbjct: 4   QNDYQFAEYLLKIGNGTEPSIVEDYVRLPKDIAIIDEGHEDSVLKLLNIVYPDLPQNAMS 63

Query: 62  VEYVIQSAILSTINKYVDHIDAKMIEIFHEEAKESMSFDEATDDTNSYYQQ 112
            EY+   AILST N+YVD I+ KMI +F    +E MSFDEA DDT+SYYQ+
Sbjct: 64  AEYITNRAILSTTNEYVDEINNKMIRLFPGNIEEFMSFDEAIDDTHSYYQE 114

[Close]

BLAST of Lcy09g017240.1 vs. NCBI nr
Match: XP_031737538.1 (uncharacterized protein LOC116402430 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-17
Identity = 50/111 (45.05%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 2   ENDNEFVEYPLKIGNEIETTIKEDFICIPKNIVIT-SKYRSAELHLIDFLFSDLAKKASS 61
           ++D  F EY LKIGN  E + ++D+IC+P NI++T +    + L L++ ++ DL    +S
Sbjct: 76  QSDTRFAEYLLKIGNRTELSTEDDYICLPANIIVTGANEEDSILKLLNIVYPDLKTHTTS 135

Query: 62  VEYVIQSAILSTINKYVDHIDAKMIEIFHEEAKESMSFDEATDDTNSYYQQ 112
            EY+   AILST N+YVD I+ +MIE+F  + +E MSFDEA DDT++YY +
Sbjct: 136 AEYMTNRAILSTTNEYVDQINERMIEMFPGKMEEFMSFDEAIDDTHNYYHE 186

[Close]

BLAST of Lcy09g017240.1 vs. NCBI nr
Match: XP_022155233.1 (ATP-dependent DNA helicase PIF1-like [Momordica charantia])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-17
Identity = 53/111 (47.75%), Postives = 75/111 (67.57%), Query Frame = 0


Query: 2   ENDNEFVEYPLKIGNEIETTIKEDFICIPKNI-VITSKYRSAELHLIDFLFSDLAKKASS 61
           +ND +F EY LKIGN  E +I ED++ +PK+I +I   +  + L L++ ++ DL + A S
Sbjct: 138 QNDYQFAEYLLKIGNGTEPSIVEDYVRLPKDIAIIDEGHEDSVLKLLNIVYPDLPQNAMS 197

Query: 62  VEYVIQSAILSTINKYVDHIDAKMIEIFHEEAKESMSFDEATDDTNSYYQQ 112
            EY+   AILST N+YVD I+ KMI +F    +E MSFDE  DDT+SYYQ+
Sbjct: 198 AEYITNRAILSTTNEYVDEINNKMIRLFLGNIEEFMSFDETIDDTHSYYQE 248

[Close]

BLAST of Lcy09g017240.1 vs. NCBI nr
Match: XP_022152307.1 (ATP-dependent DNA helicase PIF1-like [Momordica charantia])

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-16
Identity = 50/110 (45.45%), Postives = 77/110 (70.00%), Query Frame = 0


Query: 3   NDNEFVEYPLKIGNEIETTIKEDFICIPKNIVITSKY-RSAELHLIDFLFSDLAKKASSV 62
           +D++F EY LKIGN  E ++++D+IC+  +I IT +    A + L++ ++ DL + A+S 
Sbjct: 77  SDSQFAEYLLKIGNGTEPSVEDDYICLTDDITITGENDEGAIMKLLNVVYPDLEQNATSS 136

Query: 63  EYVIQSAILSTINKYVDHIDAKMIEIFHEEAKESMSFDEATDDTNSYYQQ 112
           EY+    ILST N+YVD I+ KMI++F  +  E MSFDEA DDT++YYQ+
Sbjct: 137 EYMTNRVILSTTNEYVDQINEKMIQLFPGKFFEFMSFDEAIDDTHNYYQE 186

[Close]

BLAST of Lcy09g017240.1 vs. NCBI nr
Match: XP_016559664.1 (PREDICTED: ATP-dependent DNA helicase PIF2-like [Capsicum annuum])

HSP 1 Score: 92.0 bits (227), Expect = 3.4e-15
Identity = 48/108 (44.44%), Postives = 72/108 (66.67%), Query Frame = 0


Query: 4   DNEFVEYPLKIGNEIETTIKEDFICIPKNIVITSKYRSAELHLIDFLFSDLAKKASSVEY 63
           D  F E+ L+IGN  E TIK+D +  PK +VI +K  + E  L+D +FS L K A+  +Y
Sbjct: 267 DPPFSEFLLRIGNGEEPTIKDDLVLFPKQLVIENKSSTGEDALLDQIFSSLDKNATCAKY 326

Query: 64  VIQSAILSTINKYVDHIDAKMIEIFHEEAKESMSFDEATDDTNSYYQQ 112
           + + AIL++ NKYVD ++  +I  F +E+K  +SF+ A DDTN+YYQ+
Sbjct: 327 MTERAILASRNKYVDQLNEMLISRFSDESKTFLSFNSAEDDTNNYYQE 374

The following BLAST results are available for this feature:

BLAST of Lcy09g017240.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g017240.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E1J0	1.6e-18	48.65	ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111025574 PE=3 S...	[more]
A0A6J1DMF2	6.0e-18	47.75	ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111022374 PE=3 S...	[more]
A0A6J1DFU4	8.7e-17	45.45	ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111020055 PE=3 S...	[more]
A0A1U8FVC0	1.6e-15	44.44	ATP-dependent DNA helicase OS=Capsicum annuum OX=4072 GN=LOC107859243 PE=3 SV=1	[more]
A0A6A6KMX4	3.4e-13	44.04	ATP-dependent DNA helicase OS=Hevea brasiliensis OX=3981 GN=GH714_010361 PE=3 SV...	[more]

BLAST of Lcy09g017240.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159149.1	3.3e-18	48.65	ATP-dependent DNA helicase PIF1-like [Momordica charantia]	[more]
XP_031737538.1	1.2e-17	45.05	uncharacterized protein LOC116402430 [Cucumis sativus]	[more]
XP_022155233.1	1.2e-17	47.75	ATP-dependent DNA helicase PIF1-like [Momordica charantia]	[more]
XP_022152307.1	1.8e-16	45.45	ATP-dependent DNA helicase PIF1-like [Momordica charantia]	[more]
XP_016559664.1	3.4e-15	44.44	PREDICTED: ATP-dependent DNA helicase PIF2-like [Capsicum annuum]	[more]

BLAST of Lcy09g017240.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010285	DNA helicase Pif1-like	PFAM	PF05970	PIF1	coord: 4..105 e-value: 2.6E-8 score: 33.5
None	No IPR available	PANTHER	PTHR10492	UNCHARACTERIZED	coord: 2..110
None	No IPR available	PANTHER	PTHR10492:SF76	ATP-DEPENDENT DNA HELICASE	coord: 2..110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy09g017240	Lcy09g017240	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy09g017240.1.exon1	Lcy09g017240.1.exon1	exon
Lcy09g017240.1.exon2	Lcy09g017240.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy09g017240.1.cds1	Lcy09g017240.1.cds1	CDS
Lcy09g017240.1.cds2	Lcy09g017240.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy09g017240.1	Lcy09g017240.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0000723	telomere maintenance
molecular_function	GO:0003678	DNA helicase activity