Lcy09g016650.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy09g016650.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Nucleolar protein 16
Location	Chr09: 30085669 .. 30086183 (+)
Sequence length	171
RNA-Seq Expression	Lcy09g016650.1
Synteny	Lcy09g016650.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTATCTTTTGTGTTCTTTAGAGTTGAAAACAACACTGGGAAAGAAGTGCAAAGATGGAAAATCTGCACCTCTAAAACCTTTGACCACAACTCAGCGTGTTCACGTCGGTAGGCTAATCGAGAAATATGGAGATGATTACGAGGTAAGTTTCAGTTTTACTTGCTCTTAAAACTGAGTAATTGGTTTTGTCTCACTAAAATTTGTGCTGCAGAGGATGTTCATGGATACAAAGTTGAACTCAATGCAGCACCTTGTGTTGCCACTCGCTTTGAAACTATGCAAAAGATATCACAGTTGTTTAGATAACAATCCATTGATATTGACTCGTTAAAGATATTATTGAACACCCCCATCAACTTTCAGATTGTTTGGTTACAAAAGGTGAAATCAGATAAGGTATGATAATGATCAAGTTCAATTGAGCAAATATTGTTTGAACACAATTGAATGAGGCTTGAAAGATGGCTCATTCTCTTGCCTATGCAGGAAAGGTCATGGAATGTCACTTAA

mRNA sequence

ATGTTTTATCTTTTGTGTTCTTTAGAGTTGAAAACAACACTGGGAAAGAAGTGCAAAGATGGAAAATCTGCACCTCTAAAACCTTTGACCACAACTCAGCGTGTTCACGTCGGTAGGCTAATCGAGAAATATGGAGATGATTACGAGGAAAGGTCATGGAATGTCACTTAA

Coding sequence (CDS)

ATGTTTTATCTTTTGTGTTCTTTAGAGTTGAAAACAACACTGGGAAAGAAGTGCAAAGATGGAAAATCTGCACCTCTAAAACCTTTGACCACAACTCAGCGTGTTCACGTCGGTAGGCTAATCGAGAAATATGGAGATGATTACGAGGAAAGGTCATGGAATGTCACTTAA

Protein sequence

MFYLLCSLELKTTLGKKCKDGKSAPLKPLTTTQRVHVGRLIEKYGDDYEERSWNVT

Homology

[Close]

BLAST of Lcy09g016650.1 vs. ExPASy TrEMBL
Match: A0A6J1JMQ4 (Nucleolar protein 16 OS=Cucurbita maxima OX=3661 GN=LOC111488281 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.7e-11
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 9   ELKTTLGKKCKDGKSAPLKPLTTTQRVHVGRLIEKYGDDYE 50
           +LKT LGKK KDGKSAPLKPLTT QRVHVGRLIEKYGDD+E
Sbjct: 115 DLKTALGKKRKDGKSAPLKPLTTIQRVHVGRLIEKYGDDHE 155

[Close]

BLAST of Lcy09g016650.1 vs. ExPASy TrEMBL
Match: A0A6J1DE29 (Nucleolar protein 16 OS=Momordica charantia OX=3673 GN=LOC111019220 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.7e-11
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 9   ELKTTLGKKCKDGKSAPLKPLTTTQRVHVGRLIEKYGDDYE 50
           +LK+ LGKK KDGKS PLKPLTT QRVHVGRLIEKYGDDYE
Sbjct: 116 DLKSALGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYE 156

[Close]

BLAST of Lcy09g016650.1 vs. ExPASy TrEMBL
Match: A0A6J1H6M6 (Nucleolar protein 16 OS=Cucurbita moschata OX=3662 GN=LOC111460931 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.7e-11
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 9   ELKTTLGKKCKDGKSAPLKPLTTTQRVHVGRLIEKYGDDYE 50
           +LKT LGKK +DGKS PLKPLTT QRVHVGRLIEKYGDDYE
Sbjct: 111 DLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYE 151

[Close]

BLAST of Lcy09g016650.1 vs. ExPASy TrEMBL
Match: A0A6J1GRW5 (Nucleolar protein 16 OS=Cucurbita moschata OX=3662 GN=LOC111456462 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.1e-11
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 9   ELKTTLGKKCKDGKSAPLKPLTTTQRVHVGRLIEKYGDDYE 50
           +LKT LGKK +DGKSAPLKPLTT QRVHVGRLIEKYGDD+E
Sbjct: 115 DLKTALGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHE 155

[Close]

BLAST of Lcy09g016650.1 vs. ExPASy TrEMBL
Match: A0A5A7VLA5 (Nucleolar protein 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00570 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.0e-10
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 9   ELKTTLGKKCKDGKSAPLKPLTTTQRVHVGRLIEKYGDDYE 50
           +LKT LGKK KDGKSAPL+PLTT QRVHVG+LIEKYGDDY+
Sbjct: 111 DLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQ 151

[Close]

BLAST of Lcy09g016650.1 vs. NCBI nr
Match: XP_038898931.1 (nucleolar protein 16 [Benincasa hispida])

HSP 1 Score: 77.4 bits (189), Expect = 4.3e-11
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 9   ELKTTLGKKCKDGKSAPLKPLTTTQRVHVGRLIEKYGDDYE 50
           +LKT LGKK KDGKSAPL+PLTT QRVHVGRLIEKYGDDYE
Sbjct: 115 DLKTALGKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYE 155

[Close]

BLAST of Lcy09g016650.1 vs. NCBI nr
Match: XP_022991747.1 (uncharacterized protein LOC111488281 [Cucurbita maxima])

HSP 1 Score: 77.0 bits (188), Expect = 5.7e-11
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 9   ELKTTLGKKCKDGKSAPLKPLTTTQRVHVGRLIEKYGDDYE 50
           +LKT LGKK KDGKSAPLKPLTT QRVHVGRLIEKYGDD+E
Sbjct: 115 DLKTALGKKRKDGKSAPLKPLTTIQRVHVGRLIEKYGDDHE 155

[Close]

BLAST of Lcy09g016650.1 vs. NCBI nr
Match: XP_023547523.1 (uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 77.0 bits (188), Expect = 5.7e-11
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 9   ELKTTLGKKCKDGKSAPLKPLTTTQRVHVGRLIEKYGDDYE 50
           +LKT LGKK KDGKSAPLKPLTT QRVHVGRLIEKYGDD+E
Sbjct: 115 DLKTALGKKRKDGKSAPLKPLTTIQRVHVGRLIEKYGDDHE 155

[Close]

BLAST of Lcy09g016650.1 vs. NCBI nr
Match: XP_023514821.1 (nucleolar protein 16-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 76.3 bits (186), Expect = 9.7e-11
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 9   ELKTTLGKKCKDGKSAPLKPLTTTQRVHVGRLIEKYGDDYE 50
           +LKT LGKK +DGKS PLKPLTT QRVHVGRLIEKYGDDYE
Sbjct: 115 DLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYE 155

[Close]

BLAST of Lcy09g016650.1 vs. NCBI nr
Match: XP_022960076.1 (uncharacterized protein LOC111460931 [Cucurbita moschata])

HSP 1 Score: 76.3 bits (186), Expect = 9.7e-11
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 9   ELKTTLGKKCKDGKSAPLKPLTTTQRVHVGRLIEKYGDDYE 50
           +LKT LGKK +DGKS PLKPLTT QRVHVGRLIEKYGDDYE
Sbjct: 111 DLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYE 151

[Close]

BLAST of Lcy09g016650.1 vs. TAIR 10
Match: AT1G02870.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). )

HSP 1 Score: 65.5 bits (158), Expect = 1.6e-11
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 9   ELKTTLGKKCKDGKSAPLKPLTTTQRVHVGRLIEKYGDDYE 50
           +LKT LGK+ KDGKSAPL+PLTT QR H+ RL+EK+GDD E
Sbjct: 116 DLKTALGKQRKDGKSAPLQPLTTMQRTHIRRLVEKHGDDIE 156

The following BLAST results are available for this feature:

BLAST of Lcy09g016650.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g016650.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JMQ4	2.7e-11	87.80	Nucleolar protein 16 OS=Cucurbita maxima OX=3661 GN=LOC111488281 PE=3 SV=1	[more]
A0A6J1DE29	4.7e-11	85.37	Nucleolar protein 16 OS=Momordica charantia OX=3673 GN=LOC111019220 PE=3 SV=1	[more]
A0A6J1H6M6	4.7e-11	85.37	Nucleolar protein 16 OS=Cucurbita moschata OX=3662 GN=LOC111460931 PE=3 SV=1	[more]
A0A6J1GRW5	6.1e-11	85.37	Nucleolar protein 16 OS=Cucurbita moschata OX=3662 GN=LOC111456462 PE=3 SV=1	[more]
A0A5A7VLA5	1.0e-10	82.93	Nucleolar protein 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411...	[more]

BLAST of Lcy09g016650.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898931.1	4.3e-11	87.80	nucleolar protein 16 [Benincasa hispida]	[more]
XP_022991747.1	5.7e-11	87.80	uncharacterized protein LOC111488281 [Cucurbita maxima]	[more]
XP_023547523.1	5.7e-11	87.80	uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo]	[more]
XP_023514821.1	9.7e-11	85.37	nucleolar protein 16-like [Cucurbita pepo subsp. pepo]	[more]
XP_022960076.1	9.7e-11	85.37	uncharacterized protein LOC111460931 [Cucurbita moschata]	[more]

BLAST of Lcy09g016650.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02870.1	1.6e-11	70.73	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy09g016650	Lcy09g016650	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy09g016650.1.exon1	Lcy09g016650.1.exon1	exon
Lcy09g016650.1.exon2	Lcy09g016650.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy09g016650.1.cds1	Lcy09g016650.1.cds1	CDS
Lcy09g016650.1.cds2	Lcy09g016650.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy09g016650.1	Lcy09g016650.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0005524	ATP binding