Lcy09g002720.1 (mRNA) Sponge gourd (P93075) v1

Overview
NameLcy09g002720.1
TypemRNA
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRegulator of chromosome condensation (RCC1) family protein
LocationChr09: 2257607 .. 2273308 (+)
Sequence length363
RNA-Seq ExpressionLcy09g002720.1
SyntenyLcy09g002720.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCCGATACTGCCATTATTGCTTGGTCCGTAATCATGGTTGTCTCTAATTTCATGCTGTTGTTGTCAGTGATAAATAGAATCTGAATTCATTGACCAAACTGTTCACGAATTGTCAGGGGTTCGGGAGAAGATGGGCAATTGGGATTGGGGAACAACGAAGAGAGGGAATGGGTTTGCGCTATTAAAGCCCTTGAGTCTCAGAAAGTCTGTTCTGTTGTTGCTGGTAGCCGAAACTCCCTCGCCATATGCGAAGATGGCAAGGTCAGTTACGTTTGATTTGAATCGCTCTGTTTTAGCATCTGTTCTGATTCAGGGCTTTCTCTTTCCTCATATTTCAAGCTCTTGATTTCAATTTTGTGGGGGGTTTGTAGCTGTTTACGTGGGGTTGGAATCAGAGAGGAACTCTTGGGCACCCAGCAGAGACCAAAGCTGAGAACATTCCGAGCCAGGTCAAAGCTCTTGCTAATGTTAAGATCGTACAGGTAATCTATCTATTCACGTGTGGTATTCTGCATATAATTTGTAATTTGTTGTTTTTTTTTTTTTTTTTTTTTTTTGCTGAATAACTTTTTAGTAGAACTTGATCAATGTTCTAGAGGAAGTTTTATATGGCGGTCCTGTTTTTTTAGGCGGCTATTGGTGGGTGGCACTGTCTGGCTGTGGATGACCAAGGCCGAGCTTATGCCTGGGGTACTTGTGTTCCTTTCCTTGGCTAACTGTGTGACTGGGGATACTGGGTTTGAAAAAATTTCAGTACTAGTTATCAATGTTTTAAAATGTCAAAGAGGCATCATGGCCTTCTCTTTTAAAGAGATAAGCTCAATTTGGAGGCGGAAGCACGCATAGGAGTGCAAAAACAACAAAATCAGATATCAATCAATTATTATCTTCTTAAACAAAAATTCTAGAGGTTATTCTCAAATTCATTTTCTCAATCACTAATATAGGACCCACAAAATAATAATGGGCTAAACTACCACGGTCAATGTTGTATGCTTGTATTAATATTACATATAATAGTGAACTTCATTTCATTGAAGAATAAATGGTAAGTTGATATCATCATTCTATTCTAGCAATTACATAAAGCATACAGACTACGAGGCTTTGTGCGTACTCATAGATCCATTAACTTCTTATATCTAAAGGGCATAAATCTCTTATGAATCTTAGAAGGCATAAATCTTATGGTTAAAAATCTGTGGCATGCCTCTGAGTGCAAGTCCCAAAAACTTTTTGAAACAATGCTAGTCTTAGAATTTACTTCCACTTGCCATCTGGGGTAGATAAAAAAATCTTATTTGGATTGAGTTTTAACGTTGTATGTACTAGCTTCATTTATGCATGACAACATGAGTAACAACAATATAGATTCCATTGTAAGTGAATTTTTTTCGTTTCCCAAGCAACTGAGAGGAGGGTTACTTGGAGCAGTTGAGGAACACATTTGAGGAAAGTTTTCTGTTAGGAACCCGAACTAAGAAAAGACACCAAACACTAAAATATTATATTGCAATATCGAAATGACGTTACAATATAACCCGATAGCCTTTCGAGAGGGCTAACTCTCTCCCAAGTCTCACAATGAGACACTACCAAAATTCTCCACACCATTCTAAGACCCTAGCTCCCCTATTTATAATCAAAGCACTCCTATCTAATTACCACTATGCTCTTCCTCATGTTCCATTACTATTCCCAACATATCCCTAACTAGTAGTCTCACATTTTCCTAGTGCCTCTTATTTTAGATCCATCCAGGCAAGTAAGCATGTAAAGTTTGTGTGGTGCAGGTGGTAATGAATATGGCCAGTGTGGCGAAGAACCCGAGAAGAAAGATGACACTGGTAGACCACCGAGAAGAGATATAGCAATTCCTCAACGATGTGCACCAAAGTTAATAGTTCGTCAGGTAATATATTTGTCGAGCATCTATTCTGGATTATCTTTGTGTATTACGTAGTTACTTATAGGTGCTATGCATATTGCAACTTGTACTTACCGTGCTACACATGATCACATACTATGTAGTATTTTCAATTACGACAGATTGCTTGAATTCCCGGGAGTGAACCTTCTAGTCCATTACCAAGAAGTTAATATTTTTGCCATTATCAATAATTTATTAGATACCTTTAAAGTGGATTATCTCGTGGACTATCTCAATAGTAAAAGGGACAATTAATGGCTTCAAACATCCTTAACATGGGTACAAGCTTGGTCTGACCCAAAATATTAATATTCCATTAGCTTTTTGACCGCAATGTTTTAAGATCTTGCAAAAGTTCCATGAAAAATATTGAAATGTGCCTGACTTTGCTTTGGCTTTCATGGTTATTCTTCTCCAGAAAACTCTAATAAACTTTCATGGTTATATTATGCCCAAAAAAAAAAAAAGATAAATAAATAAAAACTCTCATAAAGAATATCCGTTGTAAAGTGGAAAAGGATAACCTTTCCTTTTCTCTCGTAAATATCTCTACTTTCTAACTGGTCTTCTTCGTAGTCTCCGTTCCCCTCTTTTTGTCGAATAAATTTGGATAATTAAAAATCCCCCCATTAAGAAAACAGTATTTATTTGGTCCTTGGTGCTCCGATGAAAATAAGTTAATACTGACAATGCTATTCTACCAAGAAATATCTATTGAGATATACATACAAGGGTTTAAAGAAGGGCCATGCCAGACTCAAACCAAATCTTTTTACCAGCCTATCATACTAACTAAATGATTTGCACACATTTAAATTGCAACATAATTTTAATGTCTAGTTCTATTTTGAATCAGAGAAATCTAAGTAATTTCAGGAATAAATTATGCTAAATTTATCTATAATGTAATAAAATCAAGAACAATCTGGACCTCAATAGCCTAGTCATCAAAGAGGCAAGTTTCAAATTCAATGTCCTGGAAGTCATCAATTTAAAACTACATTAGCCACATAGCTAAAAAAAAACTATATAGGAAATAAATTGATCGAATGAAATTACAAAAGAGGAGATTCCTGTCCAACGAAAGATTACAAAACTTTTTCAATTGGCTATGAGAGAAGATAGACTATAATTATGAAAAGAAAGAGTCAATTTACACCAAGATAGAGTAAGATAAATAAAATAGAACCAGTGGAAGTATCAAAAATAGCTAGGGCATTAAGTATTCTCCAAGTTCTTTGACACTAAATGTTGTAAAACTGAACATTTATCTCATGAGGTTAGTTAAAGTATAAATAAGCTAGTCTTAAACAAAAAAGGAGAGAACATTTTAATTTCCTTCTTTAATCATGGTCACCACTAATTTAATTTATTCTATACAAATGCATGGCAACCCTTTCATTGATTGATTTGTTAATGGTGGATTCAAACAGTCTCCCAAAAACATTGGAGTATTATACCATTTGCAAGCCCCAATAAAAAGTAATGTTAGACAAATTGCTCGAGCTTGGTCTGCTTGTCCAGCCTAGCAAATCTTGATTAACATAATCACATTCCACACTTTGATCCAAATGAGAATTTATTTGAACTTCCGTTAAACGTAAACACAAATGTCTAGTCATGTATCTGTTACCACCTTTTGAAAAGAAATAATCAGAACTACTAAAATAAACAACACACCCAAAAGCTAGAATGTTCTCTCCTTTCCTTCGAAGGTTCTTCCACACTTTTTAGCTACGCCATCCAAAAAACTGATCCACAAAGTTTTTAGCCTATACTTTGAAAAGGTGGCATAAGTATAACCCAAGGACTTAATAGTGAAATACCTTATTTCATAAATACATAGCCATGGGAAGAAGAGAAAGAGATGGGGGCATCTTCCTTAATTTTTTTTTTTTTGGAGAGAGAATCTTCCTTACATTTGTTGCACGGGCTTCAGAAACATACTGATTTTTCTCTGTCATAGGTTGCTGCAGGAGGTACCCACTCCGTGGTACTTACACGTGAAGGCCATGTATGGACATGGGGCCAACCATGGCCACCTGGAGATATGTATGGTCTAATAACTTTTTAATTTTGATATTACCGAACACTTCTCTTTTGTTTACTTATTTTGAACTATAATGGACATTCTTGCACTGTTGTAGCCATCCATATAAATATGCTAATTAATTAGGTTTGCTTATTTTAAACTATAATGTCCATCTTTGCAATGTCGTGGCCTTTTTTTTCTCTGTCACAAGTCACAACCACTCTTGTCATTATTGTTATTCTTACATATTTAATTTGAATTGTTTCTAGTGCTGTAGTCCGTTTTTATTATATGCTGGGATGCTGATATATCTAGTGCTGCAGAAAGCAAATTTCTGTTCCTGTACGAGTTCAAGGTCTTGACATGGTGAGACTCATTGCGGTTGGGGCATTTCATAATTTGGCTCTCCAAGAAGATGGAACTTTATGGGCATGGGGTAATAATGAATATGGACAACTTGGAACTGGTGACACACAACCAAGATCACAGCCAATTCCAGTCCAGGGGCTTTCAGGCCTTACTTTGGTTTGCAATCTATATTCTATATTCCAAAATCTTTTTTTTTACTCTGACGTATTTTTCTATGTTTAGCCATGAAGTATTAGCTACTAATGGCTACCTTGTTAATTATTTTACCACATCTTTATCCAAAGGTTGACATTGCAGCTGGAGGATGGCATTCAACTGCATTGACAGATAGCGGAGAGGTTCTTTCTTTCTCTGTCTCTCTCCCTCTCTCCACTTAATGCTGAAGATGGGTTCTCTACGCCAATATCTATTGTTGTACATTGATACTAATACATAATTTTTATTTGATAGAAGTTGATCTCCATAGAGATGTAAAATAATTGGTGTTTGCCAGTGCATTTGCAAAGAAATACCTTCAACAATTTCGTAAAACATCGATTCTTTAATCATTTTTGGCTTGGCATTAATTCTAGTATATACTACAAACATGCCTGATGTGTCCTTGTGTTGGTTGTGATGAAGTGCTAATAGTTTGTCGTATTCACCTTTTCTTGGGATTTTAGAGGGTAAAAAAATTTTAGTTCCTAGTTGAAGTAGCAGTGCTTATGTCTTCAATGAGCATGGTTTATGGGCATCTGATCAAAATTTGCTGATGAATTACAGACTTGGTCAAGATTGAATGATGTGTCTTCCATGGTCTTTGTTTGAGTAGAAAGAGTAAGCTTATTGCTGTTGCAGGTTTATGGATGGGGACGGGGAGAACATGGGAGGCTTGGATTTGGAGATAATGATAAGAGCAGCAAAATGGTTCCCCAGAAGGTTCAACTTCTATCTGGCGAGGACATTGTTCAGGTACGGATCTGTTATTTCATGAAAACAAGAAATGAAAGAAAAAGTAGAGTGGGGAATATTGCAAACACCAGAATTAAATTTCACGGCCGCGTTAAGAATTAGGGATTAGAGTTAGTGATGCTGTTATTATCCTTTGGCAGAAGTATAAATCTTTTGAATATTCCTTACATTGATACAGGTATCATGTGGAGGCACACACTCTGTTGCAGTAACCAGTGACGGCCGCATGTTTTCGGTTAGTCTCTCATTTGTCTTTATGAACAACGTTTCTTGAGACATCATCACACATTGAAACCGATTATGGATTTTTGTTTTTTCTAGTGTATTTTTCCAAAGTAATTTTAAAATCAATACATTTCTAGAGATGATTGATTCAAAATCCTCTTTGTAAGAGTCTATTTTAGGGATAAATCATACCATATCTTGATGCATAAACTTTAAGCTTATTCTATTTTTGTTTGTCTCTTTTTAACTCTCAAATATTATAATTTGTTTTAATCCTTCGTTATGTTTTTACTAGTTAGTTAACTAAAACTTGATCTAGACATGTCTTTTATTTATTTCTCTAAGTAGATATTTATGTAGACAAGCAAAGCACATGTGATGTGGTATTGGCAGGTCATGTCCTAGTTTATGAAACAACCTCGTATTTTTTTTAAACACGTTTAAAAATTTAGAAACCAACACAAAATAAAAATGGTAAAGGATTTAAGGACCAAAATAGTATTTTAAGTGACTGTTATCCTAAATCATTTATCTTAGATACGATTTACTCTAGATTTAGAATTATTTTGAAATCCACCTCTTTTTTCAAGTACTTTGTACGAAACTATATCAAAGTTTGGGGTTCTGAAAGCTCATTGTCATTATCAACGGTCAAGTCTTGTTATATTCTTCGTCACCCTTGTTTATATGTGTATGGCAGTTTGGGCGAGGTGACCATGGGCGGCTTGGATATGGAAGGAAGGTGACAACTGGGCAACCAGAGGAAGTTCCCATTGACATTCCCCCTCCTCGTGGGGCTGAGCATGGCCGTTGGATTGCCAAACTTGTTGCCTGCGGTGGCCGCCATACGTTGGCTCTGGTACAATGGAAGCCTGATGAATAAGCAAAATAATTAATGGTGGTTAGATTCTTAAGCTTATGAACTTTTTTTCCTTTGAAATAATAATAATTATGAGACAGGGCATGGCAGTCAGAAGGTTGGTTTTAGTGTAGTCTGGCAGAATGGATTGTAGCAAACTTCCATGTATTTGATGTAATAAAACTGCTTGATTATGAACAAGAATGGGATTTGAAAGAAAATCTAAATGGTACTTTTCTATTTCTTTTTCTTTTAGTTTAACGTGGGCAGGGTATAGATGCAACAAACACTAAAATAAGTGACGTTGTAAATTATATTTACAATTGGTTGTTATTTAAATTAATACTGATTTTCATTTATTTTCTAGAAATCCTGGCTATGTAGCTGTTGGATAACCATTTGGTTTTTGTTTTTTAGTTTTTGAAAATTAGACCTATTTTTCTCCTAATTTTCTTACCGTAGGTTTCATATTTGTTAAGCAGATATTTGAATTCTAAGCCAGATTTCAAATTCCAAAAACAAGTTTTTTAAAACTTTTTTTTTTGGTTTTGTTTTTAAAACTTTACTTGGTTTTTTAAAATATGAGAAAAGGGTATATGATAAAACAAATAAACTGATGGGTGGTAGTAGTGTTTATAGGCTTAAATTTCAAAAACCAAATAGTTATCAAAGTAGGTTTTTTTGGATTGCATAATGTATAGAAAAGATACAGCAATGGCTCCTAAAGAGGAACCTAGAAAAGCCTTTGGTCGAGAGCTTTTTTTGGGTGAAGATATCTAAGAACACCTCAGCATTATGTGGAATTTCATTATTGATAGATATTGATAAACTATCATGTTGATAGACTCCGTATAACACTTAACTTCGATTAATCAAACTTGATCAGTGACAGACACTAAAAGCTCCGTATAATTCTTTATGGCAGTGTCCATCACTGATAAACTCTGATTAATCGAAGTCATTAGTGATAGATATTGATAGACTATCCTGCTAATAGACTTTGTATAACCCTTTATATCAGTATTTATTACTAATAGTTACAATAGTTACTGATAGACTATCAGTTCTATCTTTTTGTAAAACATCGGTTTTTTGCTATTTTCCTGAATAGTTTTACTTTTTTCTATTTTTAAAATATGTTTAGTGTTTTTTGCTATATATTCATATGTCCCTTTCCTTTACACCATTCAAATTATAACATATATTTCAAATCAATTTGGTTGTTTATTATCACAAGAAAGCTGATGGTTTGAAATAATTTTAAATATTCTTCGTTCCAAACGAGATATGAAATTTAAAATCATTTCTTGAGTTTTCTTAATTCGAGGGTAAGACTTTCTACTTTTCACATATTTCTTCCCTCCCTATTTCTAAGCATTCTCCATCTTTTCTCTATCTAATTAATAATGCCTATTTTCTCCTTTAATTACATTTTCGGTTTCAGATTCTCTTTTTTTTAGTTCAACAACATTTGAGGGTGAGATTTCATATTCTATTTAGTGTTTTCATGTTCTTGTCATTTTCACAAAAATTCTTGTATATAGTGGAATGCATAGTCCATGTGGTTCAAATTCATATCCCCACATTTGTTGTACTAAAAAAAACTATCAAATTGTTTACTTAGTTGTGACATTCACATTAGCTAATCACCCTCGTTTGATCATCAAGTCGGATGCTGCTGAAGTTATGGTTGAAGCCATCATCTCCCTTTGTTTGAATATGGGCAATGATTTTTTTAATAGATTTAAAAAAAGAAATAAATAATAAAATATTATTTTAAATATTATTTCAAAATCACTTAAAATCAATAATTTAATTACCTCTCCCAACATAGTATAAATAATAGTTTCTTTTCGGTCATGATTTTTTAATAGATTTAAGTTGTTTTTCTGGTCTGTCATCCCTTGTATATGTAACCTACCGATGTATTATCATAACTAAACATGAGAGAAAAAACAGTTAGAACAAAACCACAACATATGAAATAAGCTCTCATGAATGATGGGAACCTAATAATTAGAAGAAGTAAAAACAACACCTCTAATATCCAAATATTAAGATGAAAACCATCCCAATATAACTTAAACTAACCAAACTTTCCCCCCAAGTGAAGATAGTTGAACATAATTTCTTCAAACACACCAAAAAAAGAAGAAAAAAGAAATAAAATAAAAGGAAAGCTTCAATCGTCTCCTGCTAAAATGTTTGGGAGAGAATCAAAATTTAAGGATCCAATAGGACAAACTTGTGCAACTCGTCTGCCATGTAGAATGGTCAATAATGTTTTGATCTTGGTCTTCCTACCCGTCGTCTTATCCAAGCAAAATAAGACATCTCCAAGCAGAAACAATATCTTTTTATCTTCAACGGCTTTAATGAGCCAAAATCCTGTACGATTTGGTACGTCATGAATAACAAAATCTTTGACCCATAGATCTTTCCCCCGCATCCTCCACACTTGAATCTTATGAGTTGGTGGGAATTCTCTATCCATTCTTGGTGCGAATGGGTACAGGTGAATAATTGCATAAATGGTGTCATTCAAGGCCTGAATCGTCGCCTGCCTGGGGTAAGAGTGAACTTCCAAGACCGCAATGGATTCAATCTTCTCAGTTTCAACATCAAGACCATATATGACACACTCATTTTCATTTTGTCTTCCGATCCAATACATCACTCCATTGAAGTAAGTACCATGATTGGAAGGTGTTAGGGCAAAAGACAGGGATCTCCATTGGTTATGATTTTGATTGGTTCCACCTCTACCAATCGTGAAAATCTCCATTGTACTACTGGATTCTAGGCCGTTTGCTTTGAACAATTTGTACTGCTTGGTCTTAGGGCTGAAACCAAATCCGAATGCGAAATTATCATCTTCTGATACAGGTCCATTAAGTTTGAAGAATTCCCCAGTCATTGGATTAAATATGCCATCATCATAGAAACACTCACATGGGGAATCTTTCGAAGAGGAGACATCTTTGCAATAGTCACAGGAGAAATGTTTGGAAATAAAGAGCAGGCCATTGCAGGAGTTGAGAAAGATGATGTCTGACCCATCAGTGTCGTCAAACTCAAGCGAGGCAACAGAACTCAGCTTATCAATATCGAGACAATGGATCTTGGTCTTCCAACGAATAAGACTATGACTAAGACTATTACGTAGAGGAACGAAATTGGAGAAAAGGAGAATGTTTGAAAGGAGTAATTTAGAAGAAGAAGAAGCGTAATCTAAAACTAGACAATTCCAAGATTTACAGACAAGCCTGCAGACAGGCAAATTGGAGATAGATAGTTTGGAGAAGATTAGGTCATGAATATGAGGCAGAAGCTCCCAATTGCCCTTCATAATCCTCCTCCTCTTAGTGATCTCCAGCTTCTCCATCGCGCCGAAGAGGGAGAACAGAAAAATTTGAGAAGATAACACATATTTGAGAGCAAATATTATTGAATCAAAAAACTTCGGAATGAAACAACCATTAAACTAAACACCTGTGACGTAACTATCGATATCTAAGGGAAACATCTCTAACTGAATAACAAAATACAACCAAAATAGTAATAATACACAGAGATTTGGAAATAGTCTTAACATAATAACAAATAAATATCATATAATTAATATATCTGATGGAAGAGAATAATTATAATATTCTATAATTAGATTTGGGATAAATATTTAAACCTATAATGACAAAATAATCAACAATTTTTTTATTACATGTTGTTTCATTGGAAATCAAATGAAATAAACTTTTTTAAATGATTAAAATTTTGGATTTTTATGGTTTAGTCTTTGTTGTTTGAAAAATTGGAACAAATTCATAGAATCAATTAATTAATATATATGAAAACTAAATCAAGGTATTATTCACTAGTATATTGAAAAATATATATGTAGATTTCTGTTTATTTGTTGAAATCTTCTTAGTGATCTCTAAATTATTTAAAAAATCTTAAAGATTTTAAAAATAAATAAGTGAGCTATTAAAATGATTTATACCAAAGTATGATAATCAAGTATTTAAATAATAATTTCAATACATATATGTATATTTCAGATTCTCTTATTTTTTTTAGTTCAACAACATTTGAGTGTGAGATTTCATATTCTATTTAGTGTTTTCATGTTCTTGTCATTTTCACAAAAATTCTTGTTTATAGTGGAATGCATAATCCATGTGGTTCAAATTCATATCCCCACATTTGTTGTACTAAAAAAACTATCCATGTGAACAAAATATATCTTCAAATTGTTTGCTTAGTTGTGACATTCACATTAGCTAATAACTAATAAAGTCAAAGCAAAGCAAGTAAGGGAGACGGTGACTTTATAACATTAATCTCATTTGATATTTTAAGATGAATTTAGACTTGAATTTGCGACCACCGAAGCCAGAGAATATAATTTGAAGTTAGGCAAAGCTGTTGAATTTCTCAACTCTGTTTAATGCGCCGAGAAGAGATGTTTGAGAGAAAAATAGTTTTTAAATTGTAGAGGAGAAAAATTCTATAGTCGTGTTGATTTTCGCTGCCTTAAACCTTTTTTCATTTATTATGTGGAGTGGAGCTCTTGCTTATTCTCTAAAATTGTGTATATTTAAGTCAGTTTGATCTGTAATTGTGTAGTGTTTCACAATTAATAAAAATAATGAATAAAAATTGATATTTATTCTAATTATTTAATTAAATAATTTCTCGGATGTAAAATGGATTTTTTTTAGTAATTTGTTTTTTGTTTTTGCTGAATAACTTTTTAGTAGAACTTGATCAATGTTCTAGAGGAAGTTTTATATGGTGGTCCTGTTTTTTTAGGCGGCTATTGGTGGGTGGCACTGTCTGGCTGTGGATGATCAAGGCCGAGCTTATGCCTTGGCTAACTGTGTGACTGGGGATACTGGGTTTGAAAAAATTTCAGTACTATAGTTATCAATGCTTTAAAATGTCAAAGAGGCATCATGACCTTCTCTTTTTAAGAGACAAGAGACAAGCTCAATTTGGAGTGCAAGAACAACAAAATCACATATCAATCAATTATTATCTTCTTAAACAAAAATTCTAAAGGTTATTCTCAAATTCATTTTCTCAATCACTAATATAGGACCCACAAAATAATAATGGGCTAAACTACCACGGTCAATGTTGTATGCTTGTATTAATATTACATATAATAGTGAACTTCATTTCATTGAAGAATAGATGGTAAGTTGATATCATCATTCTATTCTAGCAATTACATAAAGCATACAGACTACGAGGCTTTGTGCGTACTCATAGATCCATTAACTTCTTATATCTAAAGGGCATAATTCTCTTATGAATCTTAGAAGGCATAAATCTTAAGGTTAAAAATCTGTGGCATGCCTCTGAGTGCAAGTCCCAAAAACTTTTTGAAACAATGCTAGTCTTAGAATTTACTTCCACTAACCATCTGGGATAGATAAAAAAATCTTATTTGGATTGAGTTTTAACGTTGTCTGTACTAGCTTCATTTATGCATGACAACATGAGTAACAACAGTATAGATTCCATTGTAAGTGAATTTTTTGCGTTTCCCAAGCAACTGAGAGGAGGGTTACTTGGAGCAGTTGAGGAACACATTTGAGGAAAGTTTCCCTAGTGCCTCTTATTTTAGATCCATCCAGGCAAATAAGCATGTAAAGTTTGTGTGGTGCAGGTGGTAATGAATATGGCCAGTGTGGCGAAGAACCTGAGAAGAAAGATGACACTGGTAGACCACCGAGAAGAGATATAGCAATTCCTCAACGATGTGCACCAAAGCTAATAGTTCGTCAGGTAATATATTTGTTGAGCATCTATTCTGGATCATCTTTGTGTATTACGTAGTTACTTATAGGTGCTATGCATAATACAACTTGTACTCAATATCATTATTCATTTTCACAAATCCACAAAATAATAATGTGCTAAACTACCACCGTCAATTGTTGTATACTTGTATTAATATTACATATAATAGTGAACTTCATTTCATTGAAGAATAGATGCTAAGTTGATATCATCATTCTATTCTAGCAATTACATAAAGCATACAGACTACGAGGCTTTGTGCGTACTCATAGATCCATTAACTTCTTATATCTAAAGGGCATAAATCTCTTATGAATCTTAGAAGGCATAAATCTTAAGGTTAAAAACCTGTGGCATGCCTCTGAGTGCAAGTCCCAAAAACTTTTTGAAACAATGCTAGTCTTAGAATTTACTTCCACTTACCATCTGGGATAGATAAAAAAATCTTATTTGGATTGAGTTTTAACGTTGTCTGTACTAGTTTCATTTATGCATGACAACATGAGTAACAACAGTATAAATTCCATTGTAAGTGAATTTTTTGCGTTTCACAAGCAACTGAGAGGAGGGTTACTTGGAGCAGTTGAGGAACACATTTGAGGAAAGTTTCCCTAGTGCCTCTTATTTTAGATCCATCCAGGCAAGTAAGCATGTAAAGTTTGTGTGGTGCAGGTGGTAATGAATATGGCCAGTGTGGCGAAGAACCCGAGAAGAAAGATGACACTGGTGGGAATATGGCCAGTGTGGCGAAGAACCCGAGAAGAAAGATGACACTGGTAGACCACCGAGAAGAGATATGGCAATTCCTCAACGATGTGCACCAAAGCTAATAGTTCGTCAGGTAATATATTTGTTGAGCATCTATTCTGGATTATCTCTGTGTATTACGTAGTTACTTATAGGTGCTATGCATAATACAACTTGTATTTACTGTGCTACACATGATCACATACTATGTAGTACTTTCAATTACGACACATTGCTTGAATTCCCGGGAGTGAACCTTCTAGTCCATTACCAAGAAGTAAATATTTTTGCCCATTATCAATAATTTATTAGATACCTTTAAAGTGGATTATCTCGTGGACTATCTCAAAAGTAAAAGGGACAATCAATGGCTTCGAACATCCTCTATATATCCAAATATTGAGATGAAAACCATCCCAATATAACTTAAACTAACCAAACTTTCTCCCAAGTGAAGATAGTTGAACATAATTTCTTCAAACAAACCAAAAAAAGAAGAAAAAAGAAATAAAATAAAAGAAAGCTTCAATCGCCTCCTGCTAAAATGTTTGGAAGAGAACCAAAATTTAAGGATTCTATAGGACAAACCCGTGCAACTCGTCTGCCATGTAGAATGGTCAATGTTTTGATCTTGGTCTTCCTACCCATCGTCTTATCCAAGCAAAATAAGACATCTCCGAGCAGAAACAATATCTTTTTATCTTCAACGGCTTTAATGAGCCAAAATCCTGTACAATTTGGTACGTCATGAATAACAAAATCTTTTGACCCATAAATCTTTCCTCCGCATCCTCCACACTTGAATCTTATGAGTTGGTGGGAATTCTCTATCCATTTTTGGTGCGAATGGGTACACGTGAATAATTGCATAAATGGTGTCATTCAAGGCCTGAATCCTCGCCCATTTGGGGAAAGAGCGAACTTCCAAAACCGCAATAGATTCAATCTTCTCAGTTTCAACATCAAGACCATATATGGCACACTCATTTTCATTTTGTGCTCCGATCCAATACATCACTCCATTGAAGTAAGTACCACTACTGGAAAGTGTTAGGGCAAAAGGCAGGGACCTCCATTGGTTTTGATTTTGATTGGTTCCACCTCTACCAATCGTGAAAATCTCCATTGTAAGACTGGATTCTAGACAGTTTGCTTTGAACAATTTGTATTGCTTGGTCTTAGGGCTGAAACCAAATCCGAATACGAAATTATCATCTTCTGATACAGGTCCATTAAGTTTGAAGAATTCCCCAGTCATTGGATTAAATATGCCATCATCATAGAAACACTCACATGGGGAATCTTTCGAAGAGGAGACATCTTTGCAATAGTCACAGGAGAAATGTTTGGAAATAAAGAGCAGGCCGTTGCAGGAGTTGAGAAAGATGATGTAGATGATGTCTGACCCATCAGTGTCGTCAAACTCAAGTCGAGACAATGGATCTTGGTCTTCCAACGACTAAGACTATGACTAAGACTATTACGTAGACTACGTCTCGGAGGAACGAAATTGGAGAAAAGGAGAATGTTTGAAAGGAGTAATTTAGAAGAAGAAGAAGCGTAATCTAAAATTAGACAATTCCAAGATTTACAGACAAGCCTGCAGACAGGCAAATTGGAGATAGAGAGTTTGGAGAAGATTAGCCGATGAATATGAGGCAGAAGCTCCCAATTGCCCTTCATAATCCTCCTCCTCTTACTGATCTCCAGCTTCTCCATCCAACACAACTTCAATTTGCGAAGATAACAGATAGATATATATATTTGAGACGAAATATTAATTATTCCATCTTATTCAATGAAAGAAAACTTCATTCGTGGCTAAACCAAGAATGAAAAACTAATACCTGTAAGTATCCAAGGGAAACCATCTCTAACCAAATAACAAAATACAACCAAAATAGTAAAAACACAGATTTGGAAATAGTCATAACAGAATAACAAATAAATACCATAATTAATATATCTGATGGAAGGGAATAATTATAATATTCTATAATTAGATTAAGGATAAATATTTAATCCTATAATGAGAAAATAATCAATAATTATAACATATATTGTTTAGTGTTTTTTGCTATATATGCAAATGTCCCTTTCCAACACCATTCAAATTATAACATATATTTCAAATCAATATGGTTGTTTATTATCACAAGAAAGAGGATGGTTTGAAATAATTTTAAATATTCTTCGTTCCAAACGAGATATGAAATTTAAAATCATTTCTTATGAGAAGAAGGAAAAAAGAAAAATCCAGCAGATTCAATTACAGGAGCAGTCATCCAATTACTTTTTCAAGTTTTCCTAGTAAAAAGTAAACAATTAACAAAAAGCTCAATACATCGCAAAATTCTCTATCTATTTGTGCCACGGAGAATGGTATGGAAATATTACTAAATCAATACATCGCAAAATTCTCTACCAATTTATACAGTTTTCGCATTCGCAGGAGTCATTGCATTTTTTGTTGGCCTTAAGGCAGGAACAGTTTTTGTGCTCGCATTTACTACTCTTGCAGCGACAGCGTTTGATGACCATTCGTACAAGAGGGGGATTCACGTAATGATTGAAGCAGTTACCCTTACACCTACAACTCGAGTTGCATTTTCTCTCTCCCTTGAAACATGAGCAGGACGGACTAGCAATGTTGTTTGCATCCACAATGTACCATTTCCATCGCTTGTTGATCAGGAGGATTTTGGTGCTCTTGTTGCCCGAGATCAACTTGTGGCTCATTTACAATCTGCAAGAGTCCACGCACATCATTAG

mRNA sequence

ATGGCTGCCGATACTGCCATTATTGCTTGGGGTTCGGGAGAAGATGGGCAATTGGGATTGGGGAACAACGAAGAGAGGGAATGGGTTTGCGCTATTAAAGCCCTTGAGTCTCAGAAAGTCTGTTCTGTTGTTGCTGGTAGCCGAAACTCCCTCGCCATATGCGAAGATGGCAAGCTGTTTACGTGGGGTTGGAATCAGAGAGGAACTCTTGGGCACCCAGCAGAGACCAAAGCTGAGAACATTCCGAGCCAGGTCAAAGCTCTTGCTAATGTTAAGATCGTACAGGAGGATTTTGGTGCTCTTGTTGCCCGAGATCAACTTGTGGCTCATTTACAATCTGCAAGAGTCCACGCACATCATTAG

Coding sequence (CDS)

ATGGCTGCCGATACTGCCATTATTGCTTGGGGTTCGGGAGAAGATGGGCAATTGGGATTGGGGAACAACGAAGAGAGGGAATGGGTTTGCGCTATTAAAGCCCTTGAGTCTCAGAAAGTCTGTTCTGTTGTTGCTGGTAGCCGAAACTCCCTCGCCATATGCGAAGATGGCAAGCTGTTTACGTGGGGTTGGAATCAGAGAGGAACTCTTGGGCACCCAGCAGAGACCAAAGCTGAGAACATTCCGAGCCAGGTCAAAGCTCTTGCTAATGTTAAGATCGTACAGGAGGATTTTGGTGCTCTTGTTGCCCGAGATCAACTTGTGGCTCATTTACAATCTGCAAGAGTCCACGCACATCATTAG

Protein sequence

MAADTAIIAWGSGEDGQLGLGNNEEREWVCAIKALESQKVCSVVAGSRNSLAICEDGKLFTWGWNQRGTLGHPAETKAENIPSQVKALANVKIVQEDFGALVARDQLVAHLQSARVHAHH
Homology
[Close]
BLAST of Lcy09g002720.1 vs. ExPASy Swiss-Prot
Match: F2Z461 (E3 ISG15--protein ligase Herc6 OS=Mus musculus OX=10090 GN=Herc6 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.6e-13
Identity = 36/90 (40.00%), Postives = 56/90 (62.22%), Query Frame = 0 

Query: 7   IIAWGSGEDGQLGLGNNEEREWV-CAIKALESQKVCSVVAGSRNSLAICEDGKLFTWGWN 66
           + AWG+G +GQLG+G  +E  ++   IKAL   K+  V  G  +SLA+ EDG +F+WG N
Sbjct: 95  VFAWGAGSEGQLGIGEFKEISFMPTKIKALAGIKIIQVSCGHYHSLALSEDGHVFSWGRN 154

Query: 67  QRGTLGHPAETKAENIPSQVKALANVKIVQ 96
             G LG    ++++ IP +VK+L  + + Q
Sbjct: 155 SEGQLGLGKNSRSQAIPQKVKSLEGIPLAQ 184

[Close]
BLAST of Lcy09g002720.1 vs. ExPASy Swiss-Prot
Match: Q9VR91 (Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster OX=7227 GN=HERC2 PE=1 SV=3)

HSP 1 Score: 73.2 bits (178), Expect = 2.3e-12
Identity = 37/100 (37.00%), Postives = 56/100 (56.00%), Query Frame = 0 

Query: 1    MAADTAIIAWGSGEDGQLGLGNNEEREWVCAIKALESQKVCSVVAGSRNSLAICEDGKLF 60
            +  D  + +WG GEDG+LG GN    +    ++AL ++K+  V  GS +S AI   G+L+
Sbjct: 3088 LTLDGKVFSWGEGEDGKLGHGNRTTLDKPRLVEALRAKKIRDVACGSSHSAAISSQGELY 3147

Query: 61   TWGWNQRGTLGHPAETKAENIPSQVKALANVKIVQEDFGA 101
            TWG  + G LGH  +   +  P  V ALA  ++VQ   G+
Sbjct: 3148 TWGLGEYGRLGH-GDNTTQLKPKLVTALAGRRVVQVACGS 3186

[Close]
BLAST of Lcy09g002720.1 vs. ExPASy Swiss-Prot
Match: Q9UII4 (E3 ISG15--protein ligase HERC5 OS=Homo sapiens OX=9606 GN=HERC5 PE=1 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 6.3e-10
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = 0 

Query: 7   IIAWGSGEDGQLGLGNNEEREWVCAIKALESQKVCSVVAGSRNSLAICEDGKLFTWGWNQ 66
           I +WG  E GQLGLG+ E ++    I+ L++QKV  V  G  +S  + +DG LFT+G  +
Sbjct: 212 IYSWGKNECGQLGLGHTESKDDPSLIEGLDNQKVEFVACGGSHSALLTQDGLLFTFGAGK 271

Query: 67  RGTLGHPAETKAENIPSQVKALANVKIVQ 96
            G LGH + T+ E  P  V  L   ++ Q
Sbjct: 272 HGQLGHNS-TQNELRPCLVAELVGYRVTQ 299

[Close]
BLAST of Lcy09g002720.1 vs. ExPASy Swiss-Prot
Match: O95714 (E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens OX=9606 GN=HERC2 PE=1 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-09
Identity = 30/100 (30.00%), Postives = 55/100 (55.00%), Query Frame = 0 

Query: 1    MAADTAIIAWGSGEDGQLGLGNNEEREWVCAIKALESQKVCSVVAGSRNSLAICEDGKLF 60
            +  D  + +WG G+DG+LG  +    +    I+AL+++++  +  GS +S A+   G+L+
Sbjct: 3062 LTVDGKVFSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELY 3121

Query: 61   TWGWNQRGTLGHPAETKAENIPSQVKALANVKIVQEDFGA 101
            TWG  + G LGH  +   +  P  VK L   +++Q   G+
Sbjct: 3122 TWGLGEYGRLGH-GDNTTQLKPKMVKVLLGHRVIQVACGS 3160

[Close]
BLAST of Lcy09g002720.1 vs. ExPASy Swiss-Prot
Match: Q4U2R1 (E3 ubiquitin-protein ligase HERC2 OS=Mus musculus OX=10090 GN=Herc2 PE=1 SV=3)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-09
Identity = 30/100 (30.00%), Postives = 55/100 (55.00%), Query Frame = 0 

Query: 1    MAADTAIIAWGSGEDGQLGLGNNEEREWVCAIKALESQKVCSVVAGSRNSLAICEDGKLF 60
            +  D  + +WG G+DG+LG  +    +    I+AL+++++  +  GS +S A+   G+L+
Sbjct: 3063 LTVDGKVFSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELY 3122

Query: 61   TWGWNQRGTLGHPAETKAENIPSQVKALANVKIVQEDFGA 101
            TWG  + G LGH  +   +  P  VK L   +++Q   G+
Sbjct: 3123 TWGLGEYGRLGH-GDNTTQLKPKMVKVLLGHRVIQVACGS 3161

[Close]
BLAST of Lcy09g002720.1 vs. ExPASy TrEMBL
Match: A0A6J1JZI8 (ultraviolet-B receptor UVR8-like OS=Cucurbita maxima OX=3661 GN=LOC111489289 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.1e-46
Identity = 92/99 (92.93%), Postives = 95/99 (95.96%), Query Frame = 0 

Query: 1   MAADTAIIAWGSGEDGQLGLGNNEEREWVCAIKALESQKVCSVVAGSRNSLAICEDGKLF 60
           MAA+TAI+AWGSGEDGQLGLGNNEEREWVCAIKALESQ VCSVVAGSRNSLAICEDGKLF
Sbjct: 1   MAANTAIVAWGSGEDGQLGLGNNEEREWVCAIKALESQNVCSVVAGSRNSLAICEDGKLF 60

Query: 61  TWGWNQRGTLGHPAETKAENIPSQVKALANVKIVQEDFG 100
           TWGWNQRGTLGHPAETKAEN+PSQVKALANVKIVQ   G
Sbjct: 61  TWGWNQRGTLGHPAETKAENVPSQVKALANVKIVQAAIG 99

[Close]
BLAST of Lcy09g002720.1 vs. ExPASy TrEMBL
Match: A0A6J1FH19 (ultraviolet-B receptor UVR8-like OS=Cucurbita moschata OX=3662 GN=LOC111445329 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.1e-46
Identity = 92/99 (92.93%), Postives = 95/99 (95.96%), Query Frame = 0 

Query: 1   MAADTAIIAWGSGEDGQLGLGNNEEREWVCAIKALESQKVCSVVAGSRNSLAICEDGKLF 60
           MAA+TAI+AWGSGEDGQLGLGNNEEREWVCAIKALESQ VCSVVAGSRNSLAICEDGKLF
Sbjct: 1   MAANTAIVAWGSGEDGQLGLGNNEEREWVCAIKALESQNVCSVVAGSRNSLAICEDGKLF 60

Query: 61  TWGWNQRGTLGHPAETKAENIPSQVKALANVKIVQEDFG 100
           TWGWNQRGTLGHPAETKAEN+PSQVKALANVKIVQ   G
Sbjct: 61  TWGWNQRGTLGHPAETKAENVPSQVKALANVKIVQAAIG 99

[Close]
BLAST of Lcy09g002720.1 vs. ExPASy TrEMBL
Match: A0A6J1BVZ7 (ultraviolet-B receptor UVR8-like OS=Momordica charantia OX=3673 GN=LOC111006247 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.5e-46
Identity = 93/99 (93.94%), Postives = 94/99 (94.95%), Query Frame = 0 

Query: 1   MAADTAIIAWGSGEDGQLGLGNNEEREWVCAIKALESQKVCSVVAGSRNSLAICEDGKLF 60
           MAADTAIIAWGSGEDGQLGLGNNE+ EWVCAIKALESQK CSVVAGSRNSLAICEDGKLF
Sbjct: 1   MAADTAIIAWGSGEDGQLGLGNNEDSEWVCAIKALESQKACSVVAGSRNSLAICEDGKLF 60

Query: 61  TWGWNQRGTLGHPAETKAENIPSQVKALANVKIVQEDFG 100
           TWGWNQRGTLGHPAETKAENIPSQVKALANVKIVQ   G
Sbjct: 61  TWGWNQRGTLGHPAETKAENIPSQVKALANVKIVQAAIG 99

[Close]
BLAST of Lcy09g002720.1 vs. ExPASy TrEMBL
Match: A0A6J1GTX8 (ultraviolet-B receptor UVR8-like OS=Cucurbita moschata OX=3662 GN=LOC111456909 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 9.6e-46
Identity = 92/99 (92.93%), Postives = 95/99 (95.96%), Query Frame = 0 

Query: 1   MAADTAIIAWGSGEDGQLGLGNNEEREWVCAIKALESQKVCSVVAGSRNSLAICEDGKLF 60
           MAA+TAIIAWGSGEDGQLGLGN++EREWVCAIKAL SQKVCSVVAGSRNSLAICEDGKLF
Sbjct: 1   MAANTAIIAWGSGEDGQLGLGNDQEREWVCAIKALGSQKVCSVVAGSRNSLAICEDGKLF 60

Query: 61  TWGWNQRGTLGHPAETKAENIPSQVKALANVKIVQEDFG 100
           TWGWNQRGTLGHPAETKAENIPSQVKALANVKIVQ   G
Sbjct: 61  TWGWNQRGTLGHPAETKAENIPSQVKALANVKIVQAAIG 99

[Close]
BLAST of Lcy09g002720.1 vs. ExPASy TrEMBL
Match: A0A6J1JP38 (ultraviolet-B receptor UVR8-like OS=Cucurbita maxima OX=3661 GN=LOC111487074 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.3e-45
Identity = 91/99 (91.92%), Postives = 95/99 (95.96%), Query Frame = 0 

Query: 1   MAADTAIIAWGSGEDGQLGLGNNEEREWVCAIKALESQKVCSVVAGSRNSLAICEDGKLF 60
           MAA+TAI+AWGSGEDGQLGLGN++EREWVCAIKAL SQKVCSVVAGSRNSLAICEDGKLF
Sbjct: 1   MAANTAIVAWGSGEDGQLGLGNDQEREWVCAIKALGSQKVCSVVAGSRNSLAICEDGKLF 60

Query: 61  TWGWNQRGTLGHPAETKAENIPSQVKALANVKIVQEDFG 100
           TWGWNQRGTLGHPAETKAENIPSQVKALANVKIVQ   G
Sbjct: 61  TWGWNQRGTLGHPAETKAENIPSQVKALANVKIVQAAIG 99

[Close]
BLAST of Lcy09g002720.1 vs. NCBI nr
Match: KAG7016066.1 (Ultraviolet-B receptor UVR8 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 195.7 bits (496), Expect = 2.3e-46
Identity = 92/99 (92.93%), Postives = 95/99 (95.96%), Query Frame = 0 

Query: 1   MAADTAIIAWGSGEDGQLGLGNNEEREWVCAIKALESQKVCSVVAGSRNSLAICEDGKLF 60
           MAA+TAI+AWGSGEDGQLGLGNNEEREWVCAIKALESQ VCSVVAGSRNSLAICEDGKLF
Sbjct: 1   MAANTAIVAWGSGEDGQLGLGNNEEREWVCAIKALESQNVCSVVAGSRNSLAICEDGKLF 60

Query: 61  TWGWNQRGTLGHPAETKAENIPSQVKALANVKIVQEDFG 100
           TWGWNQRGTLGHPAETKAEN+PSQVKALANVKIVQ   G
Sbjct: 61  TWGWNQRGTLGHPAETKAENVPSQVKALANVKIVQAAIG 99

[Close]
BLAST of Lcy09g002720.1 vs. NCBI nr
Match: XP_022939399.1 (ultraviolet-B receptor UVR8-like [Cucurbita moschata])

HSP 1 Score: 195.7 bits (496), Expect = 2.3e-46
Identity = 92/99 (92.93%), Postives = 95/99 (95.96%), Query Frame = 0 

Query: 1   MAADTAIIAWGSGEDGQLGLGNNEEREWVCAIKALESQKVCSVVAGSRNSLAICEDGKLF 60
           MAA+TAI+AWGSGEDGQLGLGNNEEREWVCAIKALESQ VCSVVAGSRNSLAICEDGKLF
Sbjct: 1   MAANTAIVAWGSGEDGQLGLGNNEEREWVCAIKALESQNVCSVVAGSRNSLAICEDGKLF 60

Query: 61  TWGWNQRGTLGHPAETKAENIPSQVKALANVKIVQEDFG 100
           TWGWNQRGTLGHPAETKAEN+PSQVKALANVKIVQ   G
Sbjct: 61  TWGWNQRGTLGHPAETKAENVPSQVKALANVKIVQAAIG 99

[Close]
BLAST of Lcy09g002720.1 vs. NCBI nr
Match: XP_022993194.1 (ultraviolet-B receptor UVR8-like [Cucurbita maxima])

HSP 1 Score: 195.7 bits (496), Expect = 2.3e-46
Identity = 92/99 (92.93%), Postives = 95/99 (95.96%), Query Frame = 0 

Query: 1   MAADTAIIAWGSGEDGQLGLGNNEEREWVCAIKALESQKVCSVVAGSRNSLAICEDGKLF 60
           MAA+TAI+AWGSGEDGQLGLGNNEEREWVCAIKALESQ VCSVVAGSRNSLAICEDGKLF
Sbjct: 1   MAANTAIVAWGSGEDGQLGLGNNEEREWVCAIKALESQNVCSVVAGSRNSLAICEDGKLF 60

Query: 61  TWGWNQRGTLGHPAETKAENIPSQVKALANVKIVQEDFG 100
           TWGWNQRGTLGHPAETKAEN+PSQVKALANVKIVQ   G
Sbjct: 61  TWGWNQRGTLGHPAETKAENVPSQVKALANVKIVQAAIG 99

[Close]
BLAST of Lcy09g002720.1 vs. NCBI nr
Match: KAG6578502.1 (Ultraviolet-B receptor UVR8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 195.7 bits (496), Expect = 2.3e-46
Identity = 92/99 (92.93%), Postives = 95/99 (95.96%), Query Frame = 0 

Query: 1   MAADTAIIAWGSGEDGQLGLGNNEEREWVCAIKALESQKVCSVVAGSRNSLAICEDGKLF 60
           MAA+TAI+AWGSGEDGQLGLGNNEEREWVCAIKALESQ VCSVVAGSRNSLAICEDGKLF
Sbjct: 1   MAANTAIVAWGSGEDGQLGLGNNEEREWVCAIKALESQNVCSVVAGSRNSLAICEDGKLF 60

Query: 61  TWGWNQRGTLGHPAETKAENIPSQVKALANVKIVQEDFG 100
           TWGWNQRGTLGHPAETKAEN+PSQVKALANVKIVQ   G
Sbjct: 61  TWGWNQRGTLGHPAETKAENVPSQVKALANVKIVQAAIG 99

[Close]
BLAST of Lcy09g002720.1 vs. NCBI nr
Match: XP_022133731.1 (ultraviolet-B receptor UVR8-like [Momordica charantia])

HSP 1 Score: 195.3 bits (495), Expect = 3.1e-46
Identity = 93/99 (93.94%), Postives = 94/99 (94.95%), Query Frame = 0 

Query: 1   MAADTAIIAWGSGEDGQLGLGNNEEREWVCAIKALESQKVCSVVAGSRNSLAICEDGKLF 60
           MAADTAIIAWGSGEDGQLGLGNNE+ EWVCAIKALESQK CSVVAGSRNSLAICEDGKLF
Sbjct: 1   MAADTAIIAWGSGEDGQLGLGNNEDSEWVCAIKALESQKACSVVAGSRNSLAICEDGKLF 60

Query: 61  TWGWNQRGTLGHPAETKAENIPSQVKALANVKIVQEDFG 100
           TWGWNQRGTLGHPAETKAENIPSQVKALANVKIVQ   G
Sbjct: 61  TWGWNQRGTLGHPAETKAENIPSQVKALANVKIVQAAIG 99

[Close]
BLAST of Lcy09g002720.1 vs. TAIR 10
Match: AT3G02510.1 (Regulator of chromosome condensation (RCC1) family protein )

HSP 1 Score: 157.9 bits (398), Expect = 5.0e-39
Identity = 72/99 (72.73%), Postives = 81/99 (81.82%), Query Frame = 0 

Query: 1   MAADTAIIAWGSGEDGQLGLGNNEEREWVCAIKALESQKVCSVVAGSRNSLAICEDGKLF 60
           M   T+IIAWGSGEDGQLG+G NEE+EW C ++ALE   V SVV+GSRNSLAIC+DG +F
Sbjct: 1   MVTATSIIAWGSGEDGQLGIGTNEEKEWACVVEALEPYSVRSVVSGSRNSLAICDDGTMF 60

Query: 61  TWGWNQRGTLGHPAETKAENIPSQVKALANVKIVQEDFG 100
           TWGWNQRGTLGH  ETK ENIPS+VKALANVKI Q   G
Sbjct: 61  TWGWNQRGTLGHQPETKTENIPSRVKALANVKITQAAIG 99

[Close]
BLAST of Lcy09g002720.1 vs. TAIR 10
Match: AT3G02510.2 (Regulator of chromosome condensation (RCC1) family protein )

HSP 1 Score: 157.9 bits (398), Expect = 5.0e-39
Identity = 72/99 (72.73%), Postives = 81/99 (81.82%), Query Frame = 0 

Query: 1   MAADTAIIAWGSGEDGQLGLGNNEEREWVCAIKALESQKVCSVVAGSRNSLAICEDGKLF 60
           M   T+IIAWGSGEDGQLG+G NEE+EW C ++ALE   V SVV+GSRNSLAIC+DG +F
Sbjct: 1   MVTATSIIAWGSGEDGQLGIGTNEEKEWACVVEALEPYSVRSVVSGSRNSLAICDDGTMF 60

Query: 61  TWGWNQRGTLGHPAETKAENIPSQVKALANVKIVQEDFG 100
           TWGWNQRGTLGH  ETK ENIPS+VKALANVKI Q   G
Sbjct: 61  TWGWNQRGTLGHQPETKTENIPSRVKALANVKITQAAIG 99

[Close]
BLAST of Lcy09g002720.1 vs. TAIR 10
Match: AT5G16040.1 (Regulator of chromosome condensation (RCC1) family protein )

HSP 1 Score: 149.1 bits (375), Expect = 2.3e-36
Identity = 71/99 (71.72%), Postives = 80/99 (80.81%), Query Frame = 0 

Query: 1   MAADTAIIAWGSGEDGQLGLGNNEEREWVCAIKALESQKVCSVVAGSRNSLAICEDGKLF 60
           MA+ T++IAWGSGEDGQLGLG +EE+E    + ALE   V SVV GSRNSLAIC+DGKLF
Sbjct: 1   MASATSVIAWGSGEDGQLGLGTDEEKELASVVDALEPFNVRSVVGGSRNSLAICDDGKLF 60

Query: 61  TWGWNQRGTLGHPAETKAENIPSQVKALANVKIVQEDFG 100
           TWGWNQRGTLGHP ETK E+ PS VK+LANVKIVQ   G
Sbjct: 61  TWGWNQRGTLGHPPETKTESTPSLVKSLANVKIVQAAIG 99

[Close]
BLAST of Lcy09g002720.1 vs. TAIR 10
Match: AT5G63860.1 (Regulator of chromosome condensation (RCC1) family protein )

HSP 1 Score: 60.8 bits (146), Expect = 8.4e-10
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 0 

Query: 9   AWGSGEDGQLGLGNNEEREWVCAIKALESQKVCSVVAGSRNSLAICEDGKLFTWGWNQRG 68
           +WG  ++GQLGLG+ E+      I+A E  ++  V AG+ ++ A+ EDG L+ WGW + G
Sbjct: 143 SWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYG 202

Query: 69  TLG 72
            LG
Sbjct: 203 NLG 205

[Close]
BLAST of Lcy09g002720.1 vs. TAIR 10
Match: AT3G53830.1 (Regulator of chromosome condensation (RCC1) family protein )

HSP 1 Score: 58.5 bits (140), Expect = 4.2e-09
Identity = 32/88 (36.36%), Postives = 51/88 (57.95%), Query Frame = 0 

Query: 1   MAADTAIIAWGSGEDGQLGLGNN--EEREWVCAIKALESQKVCSVVAGSRNSLAICEDGK 60
           +++D  + A+G  + GQLG G +  E    +   + LE +   +V  G+R+S  + EDG+
Sbjct: 362 ISSDGKVYAFGGNQFGQLGTGTDHAEILPRLLDGQNLEGKHAKAVSCGARHSAVLAEDGQ 421

Query: 61  LFTWGWNQRGTLGHPAETKAENIPSQVK 87
           L  WGWN+ G LG   +T   NIP+QV+
Sbjct: 422 LLCWGWNKYGQLG-LGDTNDRNIPTQVQ 448

The following BLAST results are available for this feature:
BLAST of Lcy09g002720.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F2Z4614.6e-1340.00E3 ISG15--protein ligase Herc6 OS=Mus musculus OX=10090 GN=Herc6 PE=2 SV=1[more]
Q9VR912.3e-1237.00Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster OX=7227 GN... [more]
Q9UII46.3e-1039.33E3 ISG15--protein ligase HERC5 OS=Homo sapiens OX=9606 GN=HERC5 PE=1 SV=2[more]
O957141.1e-0930.00E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens OX=9606 GN=HERC2 PE=1 SV=2[more]
Q4U2R11.1e-0930.00E3 ubiquitin-protein ligase HERC2 OS=Mus musculus OX=10090 GN=Herc2 PE=1 SV=3[more]
BLAST of Lcy09g002720.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JZI81.1e-4692.93ultraviolet-B receptor UVR8-like OS=Cucurbita maxima OX=3661 GN=LOC111489289 PE=... [more]
A0A6J1FH191.1e-4692.93ultraviolet-B receptor UVR8-like OS=Cucurbita moschata OX=3662 GN=LOC111445329 P... [more]
A0A6J1BVZ71.5e-4693.94ultraviolet-B receptor UVR8-like OS=Momordica charantia OX=3673 GN=LOC111006247 ... [more]
A0A6J1GTX89.6e-4692.93ultraviolet-B receptor UVR8-like OS=Cucurbita moschata OX=3662 GN=LOC111456909 P... [more]
A0A6J1JP381.3e-4591.92ultraviolet-B receptor UVR8-like OS=Cucurbita maxima OX=3661 GN=LOC111487074 PE=... [more]
BLAST of Lcy09g002720.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7016066.12.3e-4692.93Ultraviolet-B receptor UVR8 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022939399.12.3e-4692.93ultraviolet-B receptor UVR8-like [Cucurbita moschata][more]
XP_022993194.12.3e-4692.93ultraviolet-B receptor UVR8-like [Cucurbita maxima][more]
KAG6578502.12.3e-4692.93Ultraviolet-B receptor UVR8, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022133731.13.1e-4693.94ultraviolet-B receptor UVR8-like [Momordica charantia][more]
BLAST of Lcy09g002720.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G02510.15.0e-3972.73Regulator of chromosome condensation (RCC1) family protein [more]
AT3G02510.25.0e-3972.73Regulator of chromosome condensation (RCC1) family protein [more]
AT5G16040.12.3e-3671.72Regulator of chromosome condensation (RCC1) family protein [more]
AT5G63860.18.4e-1041.27Regulator of chromosome condensation (RCC1) family protein [more]
AT3G53830.14.2e-0936.36Regulator of chromosome condensation (RCC1) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000408Regulator of chromosome condensation, RCC1PRINTSPR00633RCCNDNSATIONcoord: 59..75
score: 32.35
coord: 6..22
score: 45.1
coord: 40..53
score: 22.62
IPR000408Regulator of chromosome condensation, RCC1PFAMPF00415RCC1coord: 56..95
e-value: 8.7E-9
score: 35.9
coord: 9..53
e-value: 3.3E-8
score: 34.0
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 5..56
score: 12.2729
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 57..99
score: 9.5594
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIGENE3D2.130.10.30coord: 1..105
e-value: 4.5E-25
score: 90.4
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IISUPERFAMILY50985RCC1/BLIP-IIcoord: 7..93
NoneNo IPR availablePANTHERPTHR45622UBIQUITIN-PROTEIN LIGASE E3A-RELATEDcoord: 4..99
NoneNo IPR availablePANTHERPTHR45622:SF44REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEINcoord: 4..99

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lcy09g002720Lcy09g002720gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy09g002720.1.exon1Lcy09g002720.1.exon1exon
Lcy09g002720.1.exon2Lcy09g002720.1.exon2exon
Lcy09g002720.1.exon3Lcy09g002720.1.exon3exon
Lcy09g002720.1.exon4Lcy09g002720.1.exon4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy09g002720.1.cds1Lcy09g002720.1.cds1CDS
Lcy09g002720.1.cds2Lcy09g002720.1.cds2CDS
Lcy09g002720.1.cds3Lcy09g002720.1.cds3CDS
Lcy09g002720.1.cds4Lcy09g002720.1.cds4CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lcy09g002720.1Lcy09g002720.1-proteinpolypeptide