Lcy08g009290.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy08g009290.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Transposon TX1 uncharacterized 149 kDa protein
Location	Chr08: 22826304 .. 22826765 (-)
Sequence length	390
RNA-Seq Expression	Lcy08g009290.1
Synteny	Lcy08g009290.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCCCCCCAGGTCTCGAGGTAGAAATGAGTTCTGGAACGAGCTGGGTGACCTTTCTGGCCTTTGCGGGTCTTACTGGTGCATTATGGGAGACTTTAATGTCACGAGGTTCCCCTCCGAGAAGGATTCCGGGGGCAGGGTAACCAGATCCATGAAAGTTGAATAGTTTCATTGAGGGGTGCGATCTCTTCGATCCTCCTTTATTGAACAGGATCTATACTTGGGATAACAGCAGAGCTAGGTCGCGCATTGATAGATGTATGTTTTCCAAGGGGTGGATGGATTTGTTCGACGATGTGAAACAAGCTTTAGGCCCAAGGGTAACCTCGGACCACTGGCCTTTAATAGTGTCCTCTGGCCCCCAAAAATTGGGACCATGCCCCTTTAGGTTTGAGAACATGTGGTTGGACCATCCCTCCTTCAAATCCTCCATCATGACGCGGTGGAACACCGAGACCTAG

mRNA sequence

ATGGTCCCCCCAGGTCTCGAGGTAGAAATGAGTTCTGGAACGAGCTGGGTGACCTTTCTGGCCTTTGCGGGTCTTACTGGTGCATTATGGGAGACTTTAATGTCACGAGGTTCCCCTCCGAGAAGGATTCCGGGGGCAGGGATCTATACTTGGGATAACAGCAGAGCTAGGTCGCGCATTGATAGATGTATGTTTTCCAAGGGGTGGATGGATTTGTTCGACGATGTGAAACAAGCTTTAGGCCCAAGGGTAACCTCGGACCACTGGCCTTTAATAGTGTCCTCTGGCCCCCAAAAATTGGGACCATGCCCCTTTAGGTTTGAGAACATGTGGTTGGACCATCCCTCCTTCAAATCCTCCATCATGACGCGGTGGAACACCGAGACCTAG

Coding sequence (CDS)

ATGGTCCCCCCAGGTCTCGAGGTAGAAATGAGTTCTGGAACGAGCTGGGTGACCTTTCTGGCCTTTGCGGGTCTTACTGGTGCATTATGGGAGACTTTAATGTCACGAGGTTCCCCTCCGAGAAGGATTCCGGGGGCAGGGATCTATACTTGGGATAACAGCAGAGCTAGGTCGCGCATTGATAGATGTATGTTTTCCAAGGGGTGGATGGATTTGTTCGACGATGTGAAACAAGCTTTAGGCCCAAGGGTAACCTCGGACCACTGGCCTTTAATAGTGTCCTCTGGCCCCCAAAAATTGGGACCATGCCCCTTTAGGTTTGAGAACATGTGGTTGGACCATCCCTCCTTCAAATCCTCCATCATGACGCGGTGGAACACCGAGACCTAG

Protein sequence

MVPPGLEVEMSSGTSWVTFLAFAGLTGALWETLMSRGSPPRRIPGAGIYTWDNSRARSRIDRCMFSKGWMDLFDDVKQALGPRVTSDHWPLIVSSGPQKLGPCPFRFENMWLDHPSFKSSIMTRWNTET

Homology

[Close]

BLAST of Lcy08g009290.1 vs. ExPASy TrEMBL
Match: A0A438CAL5 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_340 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.8e-16
Identity = 43/90 (47.78%), Postives = 54/90 (60.00%), Query Frame = 0


Query: 39  PPRRIPGAGIYTWDNSRAR---SRIDRCMFSKGWMDLFDDVKQALGPRVTSDHWPLIVSS 98
           PP R   +  +TW N +      R+DR ++S  W  LF    Q + PR TSDHWP+++ S
Sbjct: 143 PPLR---SASFTWSNMQEHPVCKRLDRFLYSNEWEQLFPQSLQDVLPRWTSDHWPIVLES 202

Query: 99  GPQKLGPCPFRFENMWLDHPSFKSSIMTRW 126
            P K GP PFRFENMWL HPSFK S  + W
Sbjct: 203 NPFKWGPTPFRFENMWLHHPSFKESFGSWW 229

[Close]

BLAST of Lcy08g009290.1 vs. ExPASy TrEMBL
Match: A5BQD9 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_000232 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 6.5e-16
Identity = 42/90 (46.67%), Postives = 54/90 (60.00%), Query Frame = 0


Query: 39  PPRRIPGAGIYTWDNSRAR---SRIDRCMFSKGWMDLFDDVKQALGPRVTSDHWPLIVSS 98
           PP R   +  +TW N +      R+DR ++S  W  LF    Q + PR TSDHWP+++ +
Sbjct: 902 PPLR---SASFTWSNMQEHPVCKRLDRFLYSNEWEQLFPQSLQDVLPRWTSDHWPIVLET 961

Query: 99  GPQKLGPCPFRFENMWLDHPSFKSSIMTRW 126
            P K GP PFRFENMWL HPSFK S  + W
Sbjct: 962 NPFKXGPTPFRFENMWLHHPSFKESFGSWW 988

[Close]

BLAST of Lcy08g009290.1 vs. ExPASy TrEMBL
Match: A0A438I0Z7 (LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF2_149 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 8.5e-16
Identity = 46/113 (40.71%), Postives = 58/113 (51.33%), Query Frame = 0


Query: 16  WVTFLAFAGLTGALWETLMSRGSPPRRIPGAGIYTWDNSRAR---SRIDRCMFSKGWMDL 75
           WV     AGL    W      G  P R   +  +TW N +      R+DR ++S  W   
Sbjct: 859 WVELSDIAGLASPRW----CVGDLPLR---SASFTWSNMQVNPVCKRLDRFLYSNEWEQT 918

Query: 76  FDDVKQALGPRVTSDHWPLIVSSGPQKLGPCPFRFENMWLDHPSFKSSIMTRW 126
           F    Q + PR TSDHWP+++ + P K GP PFRFENMWL HPSFK +    W
Sbjct: 919 FPQSIQGVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQHPSFKENFGRWW 964

[Close]

BLAST of Lcy08g009290.1 vs. ExPASy TrEMBL
Match: A0A438DN31 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_113729 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-15
Identity = 45/113 (39.82%), Postives = 57/113 (50.44%), Query Frame = 0


Query: 16  WVTFLAFAGLTGALWETLMSRGSPPRRIPGAGIYTWDNSRAR---SRIDRCMFSKGWMDL 75
           WV      GL    W      G  P R   +  +TW N +      R+DR ++S  W   
Sbjct: 516 WVELSDIVGLASPRW----CVGDLPLR---SASFTWSNMQVNPVCKRLDRFLYSNEWEQA 575

Query: 76  FDDVKQALGPRVTSDHWPLIVSSGPQKLGPCPFRFENMWLDHPSFKSSIMTRW 126
           F    Q + PR TSDHWP+++ + P K GP PFRFENMWL HPSFK +    W
Sbjct: 576 FPQTIQGVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQHPSFKENFGRWW 621

[Close]

BLAST of Lcy08g009290.1 vs. ExPASy TrEMBL
Match: A5ARB2 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_001152 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-15
Identity = 39/80 (48.75%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 49  YTWDN---SRARSRIDRCMFSKGWMDLFDDVKQALGPRVTSDHWPLIVSSGPQKLGPCPF 108
           +TW N   S    R+DR ++S  W  LF    Q + PR TSDHWP+++ + P K GP PF
Sbjct: 489 FTWSNMQESLVCKRLDRFLYSNEWEQLFPQSLQEVLPRWTSDHWPIVLETNPFKWGPTPF 548

Query: 109 RFENMWLDHPSFKSSIMTRW 126
           RFEN+WL HPSFK S  + W
Sbjct: 549 RFENLWLQHPSFKESFRSWW 568

[Close]

BLAST of Lcy08g009290.1 vs. NCBI nr
Match: RVW20303.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 94.4 bits (233), Expect = 7.9e-16
Identity = 43/90 (47.78%), Postives = 54/90 (60.00%), Query Frame = 0


Query: 39  PPRRIPGAGIYTWDNSRAR---SRIDRCMFSKGWMDLFDDVKQALGPRVTSDHWPLIVSS 98
           PP R   +  +TW N +      R+DR ++S  W  LF    Q + PR TSDHWP+++ S
Sbjct: 143 PPLR---SASFTWSNMQEHPVCKRLDRFLYSNEWEQLFPQSLQDVLPRWTSDHWPIVLES 202

Query: 99  GPQKLGPCPFRFENMWLDHPSFKSSIMTRW 126
            P K GP PFRFENMWL HPSFK S  + W
Sbjct: 203 NPFKWGPTPFRFENMWLHHPSFKESFGSWW 229

[Close]

BLAST of Lcy08g009290.1 vs. NCBI nr
Match: CAN79190.1 (hypothetical protein VITISV_000232 [Vitis vinifera])

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-15
Identity = 42/90 (46.67%), Postives = 54/90 (60.00%), Query Frame = 0


Query: 39  PPRRIPGAGIYTWDNSRAR---SRIDRCMFSKGWMDLFDDVKQALGPRVTSDHWPLIVSS 98
           PP R   +  +TW N +      R+DR ++S  W  LF    Q + PR TSDHWP+++ +
Sbjct: 902 PPLR---SASFTWSNMQEHPVCKRLDRFLYSNEWEQLFPQSLQDVLPRWTSDHWPIVLET 961

Query: 99  GPQKLGPCPFRFENMWLDHPSFKSSIMTRW 126
            P K GP PFRFENMWL HPSFK S  + W
Sbjct: 962 NPFKXGPTPFRFENMWLHHPSFKESFGSWW 988

[Close]

BLAST of Lcy08g009290.1 vs. NCBI nr
Match: RVW90389.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])

HSP 1 Score: 93.2 bits (230), Expect = 1.8e-15
Identity = 46/113 (40.71%), Postives = 58/113 (51.33%), Query Frame = 0


Query: 16  WVTFLAFAGLTGALWETLMSRGSPPRRIPGAGIYTWDNSRAR---SRIDRCMFSKGWMDL 75
           WV     AGL    W      G  P R   +  +TW N +      R+DR ++S  W   
Sbjct: 859 WVELSDIAGLASPRW----CVGDLPLR---SASFTWSNMQVNPVCKRLDRFLYSNEWEQT 918

Query: 76  FDDVKQALGPRVTSDHWPLIVSSGPQKLGPCPFRFENMWLDHPSFKSSIMTRW 126
           F    Q + PR TSDHWP+++ + P K GP PFRFENMWL HPSFK +    W
Sbjct: 919 FPQSIQGVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQHPSFKENFGRWW 964

[Close]

BLAST of Lcy08g009290.1 vs. NCBI nr
Match: RVW15380.1 (hypothetical protein CK203_082622 [Vitis vinifera])

HSP 1 Score: 92.4 bits (228), Expect = 3.0e-15
Identity = 39/80 (48.75%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 49  YTWDN---SRARSRIDRCMFSKGWMDLFDDVKQALGPRVTSDHWPLIVSSGPQKLGPCPF 108
           +TW N   S    R+DR ++S  W  LF    Q + PR TSDHWP+++ + P K GP PF
Sbjct: 309 FTWSNMQESLVCKRLDRFLYSNEWEQLFPQSLQEVLPRWTSDHWPIVLETNPFKWGPTPF 368

Query: 109 RFENMWLDHPSFKSSIMTRW 126
           RFEN+WL HPSFK S  + W
Sbjct: 369 RFENLWLQHPSFKESFRSWW 388

[Close]

BLAST of Lcy08g009290.1 vs. NCBI nr
Match: RVW36856.1 (hypothetical protein CK203_113729 [Vitis vinifera])

HSP 1 Score: 92.4 bits (228), Expect = 3.0e-15
Identity = 45/113 (39.82%), Postives = 57/113 (50.44%), Query Frame = 0


Query: 16  WVTFLAFAGLTGALWETLMSRGSPPRRIPGAGIYTWDNSRAR---SRIDRCMFSKGWMDL 75
           WV      GL    W      G  P R   +  +TW N +      R+DR ++S  W   
Sbjct: 516 WVELSDIVGLASPRW----CVGDLPLR---SASFTWSNMQVNPVCKRLDRFLYSNEWEQA 575

Query: 76  FDDVKQALGPRVTSDHWPLIVSSGPQKLGPCPFRFENMWLDHPSFKSSIMTRW 126
           F    Q + PR TSDHWP+++ + P K GP PFRFENMWL HPSFK +    W
Sbjct: 576 FPQTIQGVLPRWTSDHWPIVLETNPFKWGPTPFRFENMWLQHPSFKENFGRWW 621

The following BLAST results are available for this feature:

BLAST of Lcy08g009290.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy08g009290.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438CAL5	3.8e-16	47.78	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]
A5BQD9	6.5e-16	46.67	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI...	[more]
A0A438I0Z7	8.5e-16	40.71	LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF...	[more]
A0A438DN31	1.5e-15	39.82	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_113729 PE=4 SV=1	[more]
A5ARB2	1.5e-15	48.75	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI...	[more]

BLAST of Lcy08g009290.1 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW20303.1	7.9e-16	47.78	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
CAN79190.1	1.3e-15	46.67	hypothetical protein VITISV_000232 [Vitis vinifera]	[more]
RVW90389.1	1.8e-15	40.71	LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]	[more]
RVW15380.1	3.0e-15	48.75	hypothetical protein CK203_082622 [Vitis vinifera]	[more]
RVW36856.1	3.0e-15	39.82	hypothetical protein CK203_113729 [Vitis vinifera]	[more]

BLAST of Lcy08g009290.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 14..94 e-value: 5.6E-7 score: 31.5
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 41..93
None	No IPR available	PANTHER	PTHR33710:SF32	SUBFAMILY NOT NAMED	coord: 47..119
None	No IPR available	PANTHER	PTHR33710	BNAC02G09200D PROTEIN	coord: 47..119

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy08g009290	Lcy08g009290	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy08g009290.1.exon2	Lcy08g009290.1.exon2	exon
Lcy08g009290.1.exon1	Lcy08g009290.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy08g009290.1.cds2	Lcy08g009290.1.cds2	CDS
Lcy08g009290.1.cds1	Lcy08g009290.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy08g009290.1	Lcy08g009290.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050789	regulation of biological process
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0003824	catalytic activity