Lcy06g010850.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy06g010850.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	ribonuclease H2 subunit C
Location	Chr06: 12162001 .. 12167734 (+)
Sequence length	919
RNA-Seq Expression	Lcy06g010850.1
Synteny	Lcy06g010850.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGAAAATCTTGAACGACAATCGATTCTCAGTGCTCAAAAGAGCGGGAAGTGTAGAATCTGAAGGAGAAATGGTCGATTGAATTTCCTCGCCAGAAATCCGAAGCTTCTACGTGGGTTTAGGGTTTTTGAGTTTTGGGTTGCTTCAAAATTGATCTAATGGATGCTGAAAACGAGAGAGAAAGGGAAGTAACGGTGGATTTTGAGTTTGGGAGGGACTCTGTAGCTGTCGATCTCAGCGGCAAAGTCCATCAGCTTCCCTGTGCCATTAAATTCGATGGTCCTTGCTCTGTTTCCCAGTATTTCAAACCCAAATCCACCGGTAATGCCCTAATTTTCTCTTTTTCTCCTGGTCCGCTTTATGTATTTGGGTAATTTATTTGTAATTTACCGAGTGGTTTCTTTTTCAAAGGAGTTGAGGTTGATGGTTTGAGCGTTGAGGAAGCTTATTTCAGAGGAAGAAAGTTGCAGGGAGCTACCATTTCCCTTCCAGAAGGTTACTCTGGTACGGCCTTCTTAACATTGTCTATGTTTTCATTTACTTGTTTTAATTCATGTAGTTAATGTTTAGTATGGTAGTAGTTTCAAGGCCCACTTCTATCGACTTTGGTGAATGAGAATTCGAATAAGCAGAAATTTGAACATTATGATTCTGGTAGTTTTTGTTCTAAGATTTAGCTGCGACTGTTTGTCTTATATGTGGGTTGGTTGGTATTCACTGAGATGATTGTTGAAGAACTTTTCTGCAACTCGTAGGCTATTGTTCTGATTAATGTTCTTATTTTACTTGTAAGAAAAAGATGCTATAGGATGGTACACTGGTTGAAGATGAACAGGATATTTCAACTGGAACAAGTTTATGAATTTAATCCGAGGAATCTTTGTTTGTTGTCTTATTCTAAGGTTGAGTTTAACATTAGCTATCGATTTTATTCTCTTTTCATGATTAACTTCTGATAGGCCCCAAATTACTAAAGTGTATGAACGTAGGTGCGTGAGGAGGAAGGAGAGCGAGTAATAGGGGTCTTTGTGCGTTTTTTTGAGGGAACCACTTATATGCTGTTTTTTTTTTGATGAAAATACCAGCTTTCATTGAGAAAAAATGAAAGAATACAAGGGCATACAAAAAAATCAGCCCTAAAAAGACCTCCCTTAAAGGAAGGACTGCCAACTCAAAATGATAGAACCTAGAGTATAATTACAAAAAGCCTTGGACACAGAGGCCCAGAGAGAAACATAGAATCTAGTGAGGGCCCAAACATCGTAAGGACCTTTCTCAATGCCACGAAAAACCCTATTGTTTCTCTCACCCCAAAGACCCCATAATACAGCACACACCCCAGCTGACCATAAAAACCTCCCCTTATCGCGAAAAGGCGGATGGAGGAGGAACTCCAGTATCATCTCCCTGAAATCTCTGAAACGTCTTGCCTGAATCCCGAACGCATCATAAAAAAGACTCCACACCGAACGGGCAAACTGGAAACTCCAAAGGATATGGTCCGAGTCTTCCTCTGCCTTCCGACATAAGATGCAACAAAACGGGCCAACCAACGAATTCATCTTCCTCGAGAGCTTATCTATCGTATTAACTCTTCCGTGGAGAACTTGCTAGATAAAGAACCTTACCTTCCTCGGGATTTTAACTCTCCAAAGAATAGAAAAGATAGACTCACTATGGGGAGAAGGGTTAAGAAACCACCGAAAAAGAGACCGACAAGAAAATCCCTCAGCAGGGTTAAGATTCCAACAACGAACATCCCTCCTTCCCTCCTTAAACTGGCAATCCCCTATCAAAGATAAGAGATTGATGACCTCCGTCGTTTCCCTATTGGTCAAGGAGAACTTGGGAGAGAAGGAAGCTCTCAAATTTTCCCTGTTCTGTGTTGATAAATAAAATTGTTGATTGAGGCGTATCAATTTTGGTATCAGAGCAGTGTCTTGGAGAATGGTGGGTAAGATGGAAGGGAAAGTAGTAGCATTGGAGGAACAGTTGGCTGTGATAGCTGAGAAGCAAGTTGAAATGGAAGTAAGTTTAGGTTCGCAAATAGTTGAGATGGGCAAAACAAGCGGGATTGGATGCGAAGCTGGAATTGCAATTTTCACTTGTGCAAGTTGAGATGAAGATGATGTTTTCTCGGTTGGAGGGAATTATGCGTGTTGAGAAAGGGTCACCATCTTTTGAACGAATGCAAACTGATAAGGGAAAACAGATAATGGATGAAGAATCAGTCAAGAAAATCAGAGAGACAAAGAAAGGGGCTGAGAAAAGTGCATTGGGAAATGAAAGGATTCACGCACCTAGCAATCGAAAAGTGCCTTTGTTTGATATGCGATTGAGGAAACTGGAGGTGCCAATCTTCAAAGGCGAAGAAGGAGAAGACTCGGATGGTTGGTTGCATCAGGTGGAACGATACTTCGTTATTAATCGGCTATCAGAAAGGGATAAAATTGGAAGCTGCAGTTTTATGTTTAGAAGGAGACGCTTTGACATGGCATCAATATGAAGAGGACCGGACATCGATGAATAGTTGGGGCGAGTTTCGTAGGCTATTGTTGGAAAGATTTCGACCATTGTCACAAGGGGATCGATATGCACGGTTAATGAAGCTTCAACAAGAATCCACCGTGAGAGATTACCGCTGGCGGTTTGAACAGTATGCGGCAACCCTTAAAGATGTCTATGACGGCGTTCTGGAAAGCAAGTTTGAATTTGGGTTGAAGGAAGAAATTCAAAGTGAGTTGAGAAAATTCTAGTCTGTGGGCTTAAAAGCCAAGATGATCATGGCCCAATTAGTAGAAGATGATAACCTAGATCTGCAAAAGAGAATGGGCCCCGTTGCCCAGACCAGCTCGAAGCCAAATACAAACCCTAGCGGGTCGGGTGGTGGGTCAAGTAGCAACAATGGGTCAAGCGACTCTTCAGCGCGTACCATTTCCCTAAATTATAATCGAGGAGCATCTGGTTCGTCGACAACCATCATGTCAGTTCAAGAATCGTCTATGAGGGGAGGAAACAATCCGGCTTACAAGCGATTGACGGACAGCGAGCTGCGGAGTAAAAGAGGAAAAGGTCTTTGTTTTAGATGTGATGAAAAATTTTCGCCTGGGCATCGTTGTAAAAAAAAAGAATTACAGATTATGGTAGTGCAAGACGGGGAGGAAGAAAGTGGTGAAGAAGCAATCAAATTCAAAGGACTAAAAGAGGAGGAATTAGCTGAAAACGCTGGAATTTTGGCTGAAAATTCGGAGGTTGCGACTCTATCTTTAAATACCATGGTGGGGTTGAATTCACCAACAGTCGGTCGGTTTTGGTCGGTTTTGTGACTCCGACAAACTCGAGAACGAAAAAAGTTGATTTCGTGACTCCGGCGAATTAGATAATGGAAAAAATGAAATAAAGTAGCTTTCGGCAAAGAAGAAGGGTCAGAGTGAGAGAAGAGCATAGGAGAAAGAGAGAAGATAAAAGAAGGAAGGAGAAAAAAGAAGTTCTGCAACTTGGCCGCTGCGTTCCGACGAAAACGAAGTAAGTCCGGTGAAGTTTTTCGCTTTCGACGGAAGTTTGATGAGGGAGAGAGAGTAAAGAGAAAGAACCAAGCCAAGAGAAAGAAAAAAAAAAGATGAAAATGGAAGAGAGATGGAAAGAGTTTCGGATGAAAGAGGGGAAGGGAAGATTAAAAAAATAATTTTAATAAAAAAGTATTTTTTTTTTAAATTTTAAATAGGTAATGATTACCTACAAGTAGGTAATCATTACCTACCTTGTCTTTTCACTTTTTCATTTGTCATTTCACTCTTCTTTCTCTCTTTCTCACGTTTTTGGTTTTCCCAACCAACTTTTTTACTTTTGTTTTGTTTTGTTTTGTTTTTTTTTTTTTTAATGTATTAAAGATAAATCGGTCGGTGTGGTCGGTTCTCGCCATTTTAGGCGAGCCGACCGACCGACAGGTTGGTTTTGCACTGTGCAAAACCGACCTCCGACCGATTCCAACATAAAACCGACCGACCGACGTCGGTTCGGTCGGTTTTGATCGGTCGGCTCGGTTTTTCAGTTTACTATGCTCACCCCTACCTCCAGCTCCCACAAGAAGTCTCAGTCGAAATTAGGGCTAAAAGGTCACCAATTAAACTCCCATTTCTCGGATGAAATCACATTGTATTTATAGTAAAAGCAGGGCAGCGTCTCGACGCTAGGGACAACGTCTTGACGCTGTCCTGTTGTCGCCTCAAACATATTAGGAAATTGATAGAGCGTCGAGATGCTCGTCTTCAAGCTGGATGGCTGGCTGCAGAGCGTCGAGATGCTTGAGGGCAACGTCTCGACGCTGTCCTCTCGGGAATTTTGGCTGCTGTAGCAGTTACTTGAAGTCTTCTTCAATTATTTTACCTCTTTTAGTATCCCGAACACTTATCAACTTCCAATTGCTTATAATCATTCCAAGACTTTAATTCCTACAAAATAAGATGAAAGAGTGTGAAAATGGCCAAATTAATCTCAAAGACTAATACTAAAAGACTGGGAAAAATAGCTCATAATGTGAGCTATCAGCCCACAAAGACGAGTTGAATCCAATCGTCTTGGAAAGTTCCCTCCCGGATCTCTCCACTCGACAAAGTCTTTATATATGCGTGTGTCATATATCAAGTATCCTTGGCCTTTGTTTGAATGGGTCTTCTACTCTGAGTTAATGTTAATTGTTTTCTGTTAAAAAAATGTTCTGTTTCTACCATTTCTACCTGATTTGAACTGAAAGCAGGGCTTCATATAGACTGTAATATCCATATAATCACAATTCATTTCACCAATTTGAACTATGGGGTTAATGTCTATTTTTAAATGTTGTTCTTCAGGCTATGTGTTGGGTAGGAAAAGTCTTGGCAAGAGAAAAGCTTCTGAACAGTCCAAGGACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGGAAACATTACATATTGGAACCATGGCACTCTGCCTTCACAAGATGATACGTTTCGGCGTTCTTTTCACTGGCTTACTGTTGCACAAGCAGTATGGTTTCGATCCACAATTAACAAATTAAATTTTTTGGATTTAGATATATAGGCATGTCTTGTCTGCATTTGTTTGAATCTAAGTACTTAAATTTCTCTGGGCATTAGGAATAGTTTCGTACAAGCTTAAACTTACAAATAAGAAATGGAAATACGGTGGATGTTTTTGTTCAAAAATACTGTATTGGTTATGTAACTGCAACGTTTGAGCATTTTTCTCTCCAATATTGGTCAAATAAGGAAAAAGAAAGATCCATTTTATTTGTAACATTTCTTTGACGGCTCTTTGAAGAATTTACTATTGTTGCTATTGGACATCAGAAGTAAATTTGTTTCCTCTAGTTTTCTAACTCCCGGAATTTTGTTTATGGTTGCAGTTGCACCAACCGGTGACAGCAGAGGACTTAGCATCTGCATCTACTGCTCTCAAGAACATGAGTTGATTAGGATCATGTGCTTCGAGAAGAAAACTTTTAATACTATGGTAGTATGAAATTATTCCATACTACTACGATTTATATTTGGTCACATTATTAGCTATTTTACCAATTTATTTAATGGAGTTGCATGATTATGATGTGGCTGAAAATTAACAACAGTAATATTGAAGAATTTCATTCCATGATAGTATTTTAGTCATTTAACATGAAGTTATTCAATAAAACTAATATTTATACAATACAAGAGCATGATTTTCATATCTG

mRNA sequence

GGGAAAATCTTGAACGACAATCGATTCTCAGTGCTCAAAAGAGCGGGAAGTGTAGAATCTGAAGGAGAAATGGTCGATTGAATTTCCTCGCCAGAAATCCGAAGCTTCTACGTGGGTTTAGGGTTTTTGAGTTTTGGGTTGCTTCAAAATTGATCTAATGGATGCTGAAAACGAGAGAGAAAGGGAAGTAACGGTGGATTTTGAGTTTGGGAGGGACTCTGTAGCTGTCGATCTCAGCGGCAAAGTCCATCAGCTTCCCTGTGCCATTAAATTCGATGGTCCTTGCTCTGTTTCCCAGTATTTCAAACCCAAATCCACCGGAGTTGAGGTTGATGGTTTGAGCGTTGAGGAAGCTTATTTCAGAGGAAGAAAGTTGCAGGGAGCTACCATTTCCCTTCCAGAAGGTTACTCTGGCTATGTGTTGGGTAGGAAAAGTCTTGGCAAGAGAAAAGCTTCTGAACAGTCCAAGGACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGGAAACATTACATATTGGAACCATGGCACTCTGCCTTCACAAGATGATACGTTTCGGCGTTCTTTTCACTGGCTTACTGTTGCACAAGCATTGCACCAACCGGTGACAGCAGAGGACTTAGCATCTGCATCTACTGCTCTCAAGAACATGAGTTGATTAGGATCATGTGCTTCGAGAAGAAAACTTTTAATACTATGGTAGTATGAAATTATTCCATACTACTACGATTTATATTTGGTCACATTATTAGCTATTTTACCAATTTATTTAATGGAGTTGCATGATTATGATGTGGCTGAAAATTAACAACAGTAATATTGAAGAATTTCATTCCATGATAGTATTTTAGTCATTTAACATGAAGTTATTCAATAAAACTAATATTTATACAATACAAGAGCATGATTTTCATATCTG

Coding sequence (CDS)

ATGGATGCTGAAAACGAGAGAGAAAGGGAAGTAACGGTGGATTTTGAGTTTGGGAGGGACTCTGTAGCTGTCGATCTCAGCGGCAAAGTCCATCAGCTTCCCTGTGCCATTAAATTCGATGGTCCTTGCTCTGTTTCCCAGTATTTCAAACCCAAATCCACCGGAGTTGAGGTTGATGGTTTGAGCGTTGAGGAAGCTTATTTCAGAGGAAGAAAGTTGCAGGGAGCTACCATTTCCCTTCCAGAAGGTTACTCTGGCTATGTGTTGGGTAGGAAAAGTCTTGGCAAGAGAAAAGCTTCTGAACAGTCCAAGGACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGGAAACATTACATATTGGAACCATGGCACTCTGCCTTCACAAGATGATACGTTTCGGCGTTCTTTTCACTGGCTTACTGTTGCACAAGCATTGCACCAACCGGTGACAGCAGAGGACTTAGCATCTGCATCTACTGCTCTCAAGAACATGAGTTGA

Protein sequence

MDAENEREREVTVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS

Homology

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BLAST of Lcy06g010850.1 vs. ExPASy Swiss-Prot
Match: Q10448 (Uncharacterized protein C12B10.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC12B10.15c PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.1e-08
Identity = 38/118 (32.20%), Postives = 55/118 (46.61%), Query Frame = 0


Query: 29  KVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSG-Y 88
           K   LPC I +DGP  V +YF  K   +  +  S      RGR+L G  + LPE Y+G  
Sbjct: 20  KASLLPCHISYDGPAPVFEYFHDK-IQISNNTHSKTTVCLRGRELNGEELDLPENYTGQV 79

Query: 89  VLGRKSLGKRKASEQSKDSSPWQVKAKFGNITYWNHGTL-PSQDDTFRRS-FHWLTVA 144
           VL    L   + SE+    S W + + F  +  WN   +  S+ D ++R    W+  A
Sbjct: 80  VLCDDGLENDETSEKEIPESTWCINSTFEKVMLWNRDNMRSSEKDQWKRGVLEWIQFA 136

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BLAST of Lcy06g010850.1 vs. ExPASy TrEMBL
Match: A0A6J1EN41 (uncharacterized protein C12B10.15c OS=Cucurbita moschata OX=3662 GN=LOC111434094 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.7e-78
Identity = 144/166 (86.75%), Postives = 156/166 (93.98%), Query Frame = 0


Query: 1   MDAENEREREVTVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDG 60
           MD+E ER+REV VDF+FG DS AVDLSGKVHQLPCA+KFDGPCSVSQYFKPKSTG+EVDG
Sbjct: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  LSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITY 120
           LSVE AYFRGRKLQGATISLPEGYSGYV+GRKS GKRKASE+S+DSS WQVKAKF NITY
Sbjct: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS 167
           WNH TLP+QDDTF+RSFHWLTVAQALH+PVTAEDLA+AS ALKNMS
Sbjct: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 166

[Close]

BLAST of Lcy06g010850.1 vs. ExPASy TrEMBL
Match: A0A6J1KH29 (uncharacterized protein C12B10.15c OS=Cucurbita maxima OX=3661 GN=LOC111495695 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 2.9e-77
Identity = 143/166 (86.14%), Postives = 155/166 (93.37%), Query Frame = 0


Query: 1   MDAENEREREVTVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDG 60
           MD+E ER+REV VDF+FG DS AVDLSGKVHQLPCA+KFDGPCSVSQYFKPKSTG+EVDG
Sbjct: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  LSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITY 120
           LSV+ AYFRGRKLQGATISLPEGY GYV+GRKSL KRKASE+S+DSS WQVKAKF NITY
Sbjct: 61  LSVQNAYFRGRKLQGATISLPEGYYGYVIGRKSLRKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS 167
           WNH TLP+QDDTF+RSFHWLTVAQALH+PVTAEDLA ASTALKNMS
Sbjct: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLADASTALKNMS 166

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BLAST of Lcy06g010850.1 vs. ExPASy TrEMBL
Match: A0A6J1CLH6 (ribonuclease H2 subunit C OS=Momordica charantia OX=3673 GN=LOC111012558 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 4.2e-76
Identity = 144/166 (86.75%), Postives = 152/166 (91.57%), Query Frame = 0


Query: 1   MDAENEREREVTVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDG 60
           MDAENER+REV VD + GRDS AVDLSGKVHQLPC +K DGPCSVS YFKPK TG+EVDG
Sbjct: 1   MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDG 60

Query: 61  LSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITY 120
           LSVEEAYFRGRKLQGATISLPEGYSG+VLGRK LGKRKASEQS+DS  W+VKAKFGNITY
Sbjct: 61  LSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKASEQSQDS--WEVKAKFGNITY 120

Query: 121 WNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS 167
           WNH TLPSQDD FRRSFHWLTVAQALHQPVTAEDLASASTA K+MS
Sbjct: 121 WNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS 164

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BLAST of Lcy06g010850.1 vs. ExPASy TrEMBL
Match: A0A5A7TIT8 (Ribonuclease H2 subunit C isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00020 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.8e-72
Identity = 135/168 (80.36%), Postives = 150/168 (89.29%), Query Frame = 0


Query: 1   MDAENEREREVTV--DFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEV 60
           M+A+N R+ E TV  DF+FG D  A+DLSGK+HQLPC IKFDGPC VS YFKPKSTG+EV
Sbjct: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60

Query: 61  DGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKASEQSKDSSPWQVKAKFGNI 120
           DGL+VEEAYFRGRKLQGATISLPEGYSGYVLG+KSLGK K+S+Q  DSSPWQVKAKF NI
Sbjct: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120

Query: 121 TYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS 167
           TYWNH TLPSQDDTF+R+FHWLTVAQALH+PVTAEDLASAS AL N+S
Sbjct: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 168

[Close]

BLAST of Lcy06g010850.1 vs. ExPASy TrEMBL
Match: A0A1S3C9A8 (uncharacterized protein C12B10.15c OS=Cucumis melo OX=3656 GN=LOC103498279 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.8e-72
Identity = 135/168 (80.36%), Postives = 150/168 (89.29%), Query Frame = 0


Query: 1   MDAENEREREVTV--DFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEV 60
           M+A+N R+ E TV  DF+FG D  A+DLSGK+HQLPC IKFDGPC VS YFKPKSTG+EV
Sbjct: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60

Query: 61  DGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKASEQSKDSSPWQVKAKFGNI 120
           DGL+VEEAYFRGRKLQGATISLPEGYSGYVLG+KSLGK K+S+Q  DSSPWQVKAKF NI
Sbjct: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120

Query: 121 TYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS 167
           TYWNH TLPSQDDTF+R+FHWLTVAQALH+PVTAEDLASAS AL N+S
Sbjct: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 168

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BLAST of Lcy06g010850.1 vs. NCBI nr
Match: XP_038893586.1 (uncharacterized protein C12B10.15c [Benincasa hispida])

HSP 1 Score: 305.8 bits (782), Expect = 2.2e-79
Identity = 148/166 (89.16%), Postives = 158/166 (95.18%), Query Frame = 0


Query: 1   MDAENEREREVTVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDG 60
           M+AENER+ EV VDF+F  DSVA+DLSGKVHQLPCAIKFDGPCSVSQYFKPKSTG+E DG
Sbjct: 1   MNAENERKGEVIVDFDFESDSVALDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEFDG 60

Query: 61  LSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITY 120
           LSVEEAYFRGRKLQGATISLPEGYSGYVLG+KSLGKRKASEQ ++SSPWQVKAKF NITY
Sbjct: 61  LSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKRKASEQDQNSSPWQVKAKFANITY 120

Query: 121 WNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS 167
           WNH TLPSQDDTF+RSFHWLTVAQALH+PVTAEDLASASTALKNMS
Sbjct: 121 WNHDTLPSQDDTFQRSFHWLTVAQALHKPVTAEDLASASTALKNMS 166

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BLAST of Lcy06g010850.1 vs. NCBI nr
Match: KAG6583796.1 (Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 302.0 bits (772), Expect = 3.2e-78
Identity = 145/166 (87.35%), Postives = 157/166 (94.58%), Query Frame = 0


Query: 1   MDAENEREREVTVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDG 60
           MD+ENER+REV VDF+FG DS AVDLSGKVHQLPCA+KFDGPCSVSQYFKPKSTG+EVDG
Sbjct: 1   MDSENERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  LSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITY 120
           LSVE AYFRGRKLQGATISLPEGYSGYV+GRKS GKRKASE+S+DSS WQVKAKF NITY
Sbjct: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS 167
           WNH TLP+QDDTF+RSFHWLTVAQALH+PVTAEDLA+AS ALKNMS
Sbjct: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 166

[Close]

BLAST of Lcy06g010850.1 vs. NCBI nr
Match: XP_022927160.1 (uncharacterized protein C12B10.15c [Cucurbita moschata])

HSP 1 Score: 299.7 bits (766), Expect = 1.6e-77
Identity = 144/166 (86.75%), Postives = 156/166 (93.98%), Query Frame = 0


Query: 1   MDAENEREREVTVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDG 60
           MD+E ER+REV VDF+FG DS AVDLSGKVHQLPCA+KFDGPCSVSQYFKPKSTG+EVDG
Sbjct: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  LSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITY 120
           LSVE AYFRGRKLQGATISLPEGYSGYV+GRKS GKRKASE+S+DSS WQVKAKF NITY
Sbjct: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS 167
           WNH TLP+QDDTF+RSFHWLTVAQALH+PVTAEDLA+AS ALKNMS
Sbjct: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 166

[Close]

BLAST of Lcy06g010850.1 vs. NCBI nr
Match: XP_023001622.1 (uncharacterized protein C12B10.15c [Cucurbita maxima])

HSP 1 Score: 297.7 bits (761), Expect = 6.0e-77
Identity = 143/166 (86.14%), Postives = 155/166 (93.37%), Query Frame = 0


Query: 1   MDAENEREREVTVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDG 60
           MD+E ER+REV VDF+FG DS AVDLSGKVHQLPCA+KFDGPCSVSQYFKPKSTG+EVDG
Sbjct: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  LSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITY 120
           LSV+ AYFRGRKLQGATISLPEGY GYV+GRKSL KRKASE+S+DSS WQVKAKF NITY
Sbjct: 61  LSVQNAYFRGRKLQGATISLPEGYYGYVIGRKSLRKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS 167
           WNH TLP+QDDTF+RSFHWLTVAQALH+PVTAEDLA ASTALKNMS
Sbjct: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLADASTALKNMS 166

[Close]

BLAST of Lcy06g010850.1 vs. NCBI nr
Match: XP_023519278.1 (uncharacterized protein C12B10.15c [Cucurbita pepo subsp. pepo])

HSP 1 Score: 297.4 bits (760), Expect = 7.9e-77
Identity = 143/166 (86.14%), Postives = 155/166 (93.37%), Query Frame = 0


Query: 1   MDAENEREREVTVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDG 60
           MD+E+ER+REV VDF+FG DS  VDLSGKVHQLPCA+KFDGPCSVSQYFKPKSTG+EVDG
Sbjct: 1   MDSESERKREVIVDFDFGSDSGDVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  LSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITY 120
           LSVE AYFRGRKLQGATISLPEGYSGYV+GRKS GKRKASE+S+DSS WQVKAKF NITY
Sbjct: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS 167
           WNH TLP+QDDTF RSFHWLTVAQALH+P TAEDLA+ASTALKNMS
Sbjct: 121 WNHDTLPTQDDTFPRSFHWLTVAQALHKPATAEDLAAASTALKNMS 166

[Close]

BLAST of Lcy06g010850.1 vs. TAIR 10
Match: AT2G39440.1 (CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 202.6 bits (514), Expect = 2.5e-52
Identity = 98/158 (62.03%), Postives = 120/158 (75.95%), Query Frame = 0


Query: 12  TVDFEFGRD-SVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRG 71
           T+DF    D +  VDLS +VHQLPC I+FDGP  VS YFKPKS+ VE+DG+  EEA+FRG
Sbjct: 3   TIDFRAAADENSIVDLSSQVHQLPCCIRFDGPVEVSHYFKPKSSDVEIDGVKTEEAHFRG 62

Query: 72  RKLQGATISLPEGYSGYVLGRKS----LGKRKASEQSKDSSPWQVKAKFGNITYWNHGTL 131
           RKLQGATISLP GYSG+VL + S     GKRKAS  ++D+  W+VKAKF N+TYWNH +L
Sbjct: 63  RKLQGATISLPSGYSGFVLRQASNLNANGKRKASMPTEDNQCWEVKAKFNNLTYWNHDSL 122

Query: 132 PSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKN 165
           PS+DDTF RSFHW ++A+ALH+PV  EDL + S   KN
Sbjct: 123 PSKDDTFFRSFHWFSIAEALHKPVKVEDLVAVSHGGKN 160

The following BLAST results are available for this feature:

BLAST of Lcy06g010850.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q10448	2.1e-08	32.20	Uncharacterized protein C12B10.15c OS=Schizosaccharomyces pombe (strain 972 / AT...	[more]

BLAST of Lcy06g010850.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EN41	7.7e-78	86.75	uncharacterized protein C12B10.15c OS=Cucurbita moschata OX=3662 GN=LOC111434094...	[more]
A0A6J1KH29	2.9e-77	86.14	uncharacterized protein C12B10.15c OS=Cucurbita maxima OX=3661 GN=LOC111495695 P...	[more]
A0A6J1CLH6	4.2e-76	86.75	ribonuclease H2 subunit C OS=Momordica charantia OX=3673 GN=LOC111012558 PE=4 SV...	[more]
A0A5A7TIT8	2.8e-72	80.36	Ribonuclease H2 subunit C isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3C9A8	2.8e-72	80.36	uncharacterized protein C12B10.15c OS=Cucumis melo OX=3656 GN=LOC103498279 PE=4 ...	[more]

BLAST of Lcy06g010850.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893586.1	2.2e-79	89.16	uncharacterized protein C12B10.15c [Benincasa hispida]	[more]
KAG6583796.1	3.2e-78	87.35	Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022927160.1	1.6e-77	86.75	uncharacterized protein C12B10.15c [Cucurbita moschata]	[more]
XP_023001622.1	6.0e-77	86.14	uncharacterized protein C12B10.15c [Cucurbita maxima]	[more]
XP_023519278.1	7.9e-77	86.14	uncharacterized protein C12B10.15c [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lcy06g010850.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39440.1	2.5e-52	62.03	CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013924	Ribonuclease H2, subunit C	PFAM	PF08615	RNase_H2_suC	coord: 30..146 e-value: 2.9E-21 score: 76.1
IPR013924	Ribonuclease H2, subunit C	CDD	cd09271	RNase_H2-C	coord: 31..123 e-value: 6.08448E-36 score: 118.242
None	No IPR available	GENE3D	2.40.128.680		coord: 1..153 e-value: 1.4E-39 score: 136.6
None	No IPR available	PANTHER	PTHR47204	OS02G0168900 PROTEIN	coord: 19..160

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy06g010850	Lcy06g010850	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy06g010850.1.utr5p1	Lcy06g010850.1.utr5p1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy06g010850.1.exon1	Lcy06g010850.1.exon1	exon
Lcy06g010850.1.exon2	Lcy06g010850.1.exon2	exon
Lcy06g010850.1.exon3	Lcy06g010850.1.exon3	exon
Lcy06g010850.1.exon4	Lcy06g010850.1.exon4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy06g010850.1.cds1	Lcy06g010850.1.cds1	CDS
Lcy06g010850.1.cds2	Lcy06g010850.1.cds2	CDS
Lcy06g010850.1.cds3	Lcy06g010850.1.cds3	CDS
Lcy06g010850.1.cds4	Lcy06g010850.1.cds4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy06g010850.1.utr3p1	Lcy06g010850.1.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy06g010850.1	Lcy06g010850.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006401	RNA catabolic process
cellular_component	GO:0032299	ribonuclease H2 complex