Lcy06g010250.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy06g010250.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase domain-containing protein
Location	Chr06: 11037875 .. 11038782 (-)
Sequence length	598
RNA-Seq Expression	Lcy06g010250.1
Synteny	Lcy06g010250.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATGAGAGATTTCCTGTGGGAAGGGGTTGATGAAGGGAAAGGTGCTCACCTGGTGAGTTGGAAGGACATCGGTAAACCTATGAGTCTTGGGGGTCTTGAGATAGGTAATTTGAGAACTCGTAACAGAGCCCTGCTTGCCAAATGGCTTTGGCGTTTTCGCTTCAAATCTGATTCTCTCTGGGTTAGGATTATCGGGAGTAAATACGATCATCATCCTCACATGTGGCTGTTGGGTGGGGTCAAAGGCACCTTCAGGAATCCTTGGAAAGACATCTCGTTGGAGCTCCCCTCTTTCTCTTCCTTGGTCCCGTGCACAGTAGGGGATGGGAGGGACATATTTTTGGGTGGATTTATGGGTGGGGGATTGCTCCCTCTGCTCGTTGTTCCCGCGTCTTTATCATTTATCTTCGATGAAAAATCTCACTGTGGCTGACATCCTTGGCCCTGTGGGGAGCTCCACTTCTTTTTCTTTCGGTTTTCGTTGTTCGTTATCTAATAGAGAAACCACGGACATCACGACCCTTTTATCTTTGCCTGAAGGGGTTATCCTTAGATCGGGCAGGAGGGATATGCACTTTTGGAGTCTCGACCCCTCTGCGGGCTTTTAATGCCGTTCGTTCTTCCAGTTCCTGATCAATCCCTCCCCTGTTAGAGATTATGTTTTTTCGTGCCTATGGAAGATTAAAGCTCCGAAGAAAGTTTTATTCTTTGCTTGGAAGGTCACCTTGGGCCGTGTTAACACTTTTGATAGGCTCTTGAGAGTGAAGGCTCCTTTAGTTGGCCCTTTCTGTTGCATTCTATGTCGGAAGGCAGAGGAAAATCTTGATCATCTGTTATGGGATTGTGAGTTTGCTCGCTCTGTCTGGAGCCTCTTCTTCGAGGTCTTCGAGTTTCAGTTCGCGAGCTAG

mRNA sequence

TATGAGAGATTTCCTGTGGGAAGGGGTTGATGAAGGGAAAGGTGCTCACCTGGTGAGTTGGAAGGACATCGGTAAACCTATGAGTCTTGGGGGTCTTGAGATAGGTAATTTGAGAACTCGTAACAGAGCCCTGCTTGCCAAATGGCTTTGGCGTTTTCGCTTCAAATCTGATTCTCTCTGGGTTAGGATTATCGGGAGTAAATACGATCATCATCCTCACATGTGGCTGTTGGGTGGGGTCAAAGGCACCTTCAGGAATCCTTGGAAAGACATCTCGTTGGAGCTCCCCTCTTTCTCTTCCTTGGTCCCGTGCACATTCCTGATCAATCCCTCCCCTGTTAGAGATTATGTTTTTTCGTGCCTATGGAAGATTAAAGCTCCGAAGAAAGTTTTATTCTTTGCTTGGAAGGTCACCTTGGGCCGTGTTAACACTTTTGATAGGCTCTTGAGAGTGAAGGCTCCTTTAGTTGGCCCTTTCTGTTGCATTCTATGTCGGAAGGCAGAGGAAAATCTTGATCATCTGTTATGGGATTGTGAGTTTGCTCGCTCTGTCTGGAGCCTCTTCTTCGAGGTCTTCGAGTTTCAGTTCGCGAGCTAG

Coding sequence (CDS)

ATGAGAGATTTCCTGTGGGAAGGGGTTGATGAAGGGAAAGGTGCTCACCTGGTGAGTTGGAAGGACATCGGTAAACCTATGAGTCTTGGGGGTCTTGAGATAGGTAATTTGAGAACTCGTAACAGAGCCCTGCTTGCCAAATGGCTTTGGCGTTTTCGCTTCAAATCTGATTCTCTCTGGGTTAGGATTATCGGGAGTAAATACGATCATCATCCTCACATGTGGCTGTTGGGTGGGGTCAAAGGCACCTTCAGGAATCCTTGGAAAGACATCTCGTTGGAGCTCCCCTCTTTCTCTTCCTTGGTCCCGTGCACATTCCTGATCAATCCCTCCCCTGTTAGAGATTATGTTTTTTCGTGCCTATGGAAGATTAAAGCTCCGAAGAAAGTTTTATTCTTTGCTTGGAAGGTCACCTTGGGCCGTGTTAACACTTTTGATAGGCTCTTGAGAGTGAAGGCTCCTTTAGTTGGCCCTTTCTGTTGCATTCTATGTCGGAAGGCAGAGGAAAATCTTGATCATCTGTTATGGGATTGTGAGTTTGCTCGCTCTGTCTGGAGCCTCTTCTTCGAGGTCTTCGAGTTTCAGTTCGCGAGCTAG

Protein sequence

MRDFLWEGVDEGKGAHLVSWKDIGKPMSLGGLEIGNLRTRNRALLAKWLWRFRFKSDSLWVRIIGSKYDHHPHMWLLGGVKGTFRNPWKDISLELPSFSSLVPCTFLINPSPVRDYVFSCLWKIKAPKKVLFFAWKVTLGRVNTFDRLLRVKAPLVGPFCCILCRKAEENLDHLLWDCEFARSVWSLFFEVFEFQFAS

Homology

[Close]

BLAST of Lcy06g010250.1 vs. ExPASy TrEMBL
Match: A0A5D3C4A7 (Peroxin Pex14 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00790 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.1e-34
Identity = 83/167 (49.70%), Postives = 101/167 (60.48%), Query Frame = 0


Query: 31  GLEIGNLRTRNRALLAKWLWRFRFKSDSLWVRIIGSKYDHHPHMWLLGGVKGTFRNPWKD 90
           G EI  ++ RN+ALLAKWLW F  + DSL  RII SK+   P  W   GVK TFRNP KD
Sbjct: 25  GSEIVIIKIRNKALLAKWLWHFSLEPDSLRHRIIVSKHGSLPFEWTTKGVKATFRNPLKD 84

Query: 91  ISLELPSFSSLVPCTFLINPSPVRDYVFSCLWKIKAPKKVLFFAWKVTLGRVNTFDRLLR 150
           IS EL +F  +V                  LW +  PKKV FF W+  LG+VNT DRL+R
Sbjct: 85  ISFELATFLLIV------------------LWGM-VPKKVRFFIWQNLLGQVNTIDRLVR 144

Query: 151 VKAPLVGPFCCILCRKAEENLDHLLWDCEFARSVWSLFFEVFEFQFA 198
            +  L GPFCC L +KAEE+LDH  WDC++AR+VWS F  +    FA
Sbjct: 145 -RTSLDGPFCCTLFQKAEEDLDHHFWDCQYARAVWSSFLRLLSINFA 171

[Close]

BLAST of Lcy06g010250.1 vs. ExPASy TrEMBL
Match: A0A5A7SSQ8 (Peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00550 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.1e-29
Identity = 65/122 (53.28%), Postives = 85/122 (69.67%), Query Frame = 0


Query: 8   GVDEGKGAHLVSWKDIGKPMSLGGLEIGNLRTRNRALLAKWLWRFRFKSDSLWVRIIGSK 67
           GV EG  ++L+S + +G P+S GGL +GNLR RNRALLAKWLW F  + DSLW RII SK
Sbjct: 558 GVVEGHDSYLISLEAVGLPVSQGGLGVGNLRIRNRALLAKWLWCFHLEPDSLWNRIILSK 617

Query: 68  YDHHPHMWLLGGVKGTFRNPWKDISLELPSFSSLVPCTF----LINPSPVRDYVFSCLWK 126
           +   P  W+  GVKGTFRNPWKDIS+ELP+FS  V C      L++ +P ++ +F  +W+
Sbjct: 618 HGSLPFEWITRGVKGTFRNPWKDISIELPTFSQFVSCFIGDEPLVDLAPPKESIFYVIWR 677

[Close]

BLAST of Lcy06g010250.1 vs. ExPASy TrEMBL
Match: A0A5A7VJE4 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G00850 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.9e-28
Identity = 67/136 (49.26%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 62  RIIGSKYDHHPHMWLLGGVKGTFRNPWKDISLELPSFSSLVPCTFLINPSPVRDYVFSCL 121
           RII S++D HP  W L GVKGT RNP K+IS ELP+FS     +F+++            
Sbjct: 60  RIIVSRHDAHPFEWSLKGVKGTHRNPGKNISFELPTFSWFT--SFVVDED---------- 119

Query: 122 WKIKAPKKVLFFAWKVTLGRVNTFDRLLRVKAPLVGPFCCILCRKAEENLDHLLWDCEFA 181
              +  ++V FF W+V LGRVNT DRL+R +   VGPFCC+LC+KAEE+LDHL  DC++A
Sbjct: 120 ---EGSQEVRFFIWQVLLGRVNTVDRLVRKRTLFVGPFCCMLCQKAEEDLDHLFCDCQYA 179

Query: 182 RSVWSLFFEVFEFQFA 198
           R+VWS F +     FA
Sbjct: 180 RAVWSSFLQKLGVSFA 180

[Close]

BLAST of Lcy06g010250.1 vs. ExPASy TrEMBL
Match: A0A438IAY6 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_272 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 6.7e-28
Identity = 72/192 (37.50%), Postives = 93/192 (48.44%), Query Frame = 0


Query: 2   RDFLWEGVDEGKGAHLVSWKDIGKPMSLGGLEIGNLRTRNRALLAKWLWRFRFKSDSLWV 61
           RDFLW G  +GK  HL+ W+ + +P  LGGL  G    RN ALL KWLWRF  +   LW 
Sbjct: 286 RDFLWSGAGKGKKDHLIRWEVVSRPKELGGLGFGKTSMRNIALLGKWLWRFSRERSGLWH 345

Query: 62  RIIGSKYDHHPHMWLLG-GVKGTFRNPWKDISLELPSFSSLVPCTFLINPSPVRDYVFSC 121
           ++I S Y  HP+ W     V+ + R PWK I+                        VF  
Sbjct: 346 KVIASIYGTHPNAWDTNMVVRWSHRCPWKAIA-----------------------QVFQF 405

Query: 122 LWKIKAPKKVLFFAWKVTLGRVNTFDRL-LRVKAPLVGPFCCILCRKAEENLDHLLWDCE 181
           LW  K P KV   AW V  G+VNT D+L LR     + P  CILC+   E++DH+   C 
Sbjct: 406 LWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQWCILCKGNGESIDHIFLHCP 454

Query: 182 FARSVWSLFFEV 192
               +W   F +
Sbjct: 466 VTIGIWYRLFNL 454

[Close]

BLAST of Lcy06g010250.1 vs. ExPASy TrEMBL
Match: A0A6J1DFI2 (uncharacterized protein LOC111019624 OS=Momordica charantia OX=3673 GN=LOC111019624 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.1e-27
Identity = 60/100 (60.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 1   MRDFLWEGVDEGKGAHLVSWKDIGKPMSLGGLEIGNLRTRNRALLAKWLWRFRFKSDSLW 60
           MRDFLWEGV+EG GAHLV+WK++ KP+  GGL +GNLR RN A LAKWLWRF  +  +LW
Sbjct: 196 MRDFLWEGVEEGGGAHLVNWKEVSKPLEAGGLGVGNLRLRNEAFLAKWLWRFFHEPHALW 255

Query: 61  VRIIGSKYDHHPHMWLL-GGVKGTFRNPWKDISLELPSFS 100
            +II SKY+ HP  W+L GG K +  NPWK I+   P FS
Sbjct: 256 RKIIVSKYERHPSDWILAGGSKVSNFNPWKAIASCFPVFS 295

[Close]

BLAST of Lcy06g010250.1 vs. NCBI nr
Match: TYK06215.1 (peroxin Pex14 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 4.4e-34
Identity = 83/167 (49.70%), Postives = 101/167 (60.48%), Query Frame = 0


Query: 31  GLEIGNLRTRNRALLAKWLWRFRFKSDSLWVRIIGSKYDHHPHMWLLGGVKGTFRNPWKD 90
           G EI  ++ RN+ALLAKWLW F  + DSL  RII SK+   P  W   GVK TFRNP KD
Sbjct: 25  GSEIVIIKIRNKALLAKWLWHFSLEPDSLRHRIIVSKHGSLPFEWTTKGVKATFRNPLKD 84

Query: 91  ISLELPSFSSLVPCTFLINPSPVRDYVFSCLWKIKAPKKVLFFAWKVTLGRVNTFDRLLR 150
           IS EL +F  +V                  LW +  PKKV FF W+  LG+VNT DRL+R
Sbjct: 85  ISFELATFLLIV------------------LWGM-VPKKVRFFIWQNLLGQVNTIDRLVR 144

Query: 151 VKAPLVGPFCCILCRKAEENLDHLLWDCEFARSVWSLFFEVFEFQFA 198
            +  L GPFCC L +KAEE+LDH  WDC++AR+VWS F  +    FA
Sbjct: 145 -RTSLDGPFCCTLFQKAEEDLDHHFWDCQYARAVWSSFLRLLSINFA 171

[Close]

BLAST of Lcy06g010250.1 vs. NCBI nr
Match: KAA0032235.1 (peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 139.0 bits (349), Expect = 4.3e-29
Identity = 65/122 (53.28%), Postives = 85/122 (69.67%), Query Frame = 0


Query: 8   GVDEGKGAHLVSWKDIGKPMSLGGLEIGNLRTRNRALLAKWLWRFRFKSDSLWVRIIGSK 67
           GV EG  ++L+S + +G P+S GGL +GNLR RNRALLAKWLW F  + DSLW RII SK
Sbjct: 558 GVVEGHDSYLISLEAVGLPVSQGGLGVGNLRIRNRALLAKWLWCFHLEPDSLWNRIILSK 617

Query: 68  YDHHPHMWLLGGVKGTFRNPWKDISLELPSFSSLVPCTF----LINPSPVRDYVFSCLWK 126
           +   P  W+  GVKGTFRNPWKDIS+ELP+FS  V C      L++ +P ++ +F  +W+
Sbjct: 618 HGSLPFEWITRGVKGTFRNPWKDISIELPTFSQFVSCFIGDEPLVDLAPPKESIFYVIWR 677

[Close]

BLAST of Lcy06g010250.1 vs. NCBI nr
Match: KAA0067918.1 (hypothetical protein E6C27_scaffold138G00850 [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 8.1e-28
Identity = 67/136 (49.26%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 62  RIIGSKYDHHPHMWLLGGVKGTFRNPWKDISLELPSFSSLVPCTFLINPSPVRDYVFSCL 121
           RII S++D HP  W L GVKGT RNP K+IS ELP+FS     +F+++            
Sbjct: 60  RIIVSRHDAHPFEWSLKGVKGTHRNPGKNISFELPTFSWFT--SFVVDED---------- 119

Query: 122 WKIKAPKKVLFFAWKVTLGRVNTFDRLLRVKAPLVGPFCCILCRKAEENLDHLLWDCEFA 181
              +  ++V FF W+V LGRVNT DRL+R +   VGPFCC+LC+KAEE+LDHL  DC++A
Sbjct: 120 ---EGSQEVRFFIWQVLLGRVNTVDRLVRKRTLFVGPFCCMLCQKAEEDLDHLFCDCQYA 179

Query: 182 RSVWSLFFEVFEFQFA 198
           R+VWS F +     FA
Sbjct: 180 RAVWSSFLQKLGVSFA 180

[Close]

BLAST of Lcy06g010250.1 vs. NCBI nr
Match: RVW93876.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 134.0 bits (336), Expect = 1.4e-27
Identity = 72/192 (37.50%), Postives = 93/192 (48.44%), Query Frame = 0


Query: 2   RDFLWEGVDEGKGAHLVSWKDIGKPMSLGGLEIGNLRTRNRALLAKWLWRFRFKSDSLWV 61
           RDFLW G  +GK  HL+ W+ + +P  LGGL  G    RN ALL KWLWRF  +   LW 
Sbjct: 286 RDFLWSGAGKGKKDHLIRWEVVSRPKELGGLGFGKTSMRNIALLGKWLWRFSRERSGLWH 345

Query: 62  RIIGSKYDHHPHMWLLG-GVKGTFRNPWKDISLELPSFSSLVPCTFLINPSPVRDYVFSC 121
           ++I S Y  HP+ W     V+ + R PWK I+                        VF  
Sbjct: 346 KVIASIYGTHPNAWDTNMVVRWSHRCPWKAIA-----------------------QVFQF 405

Query: 122 LWKIKAPKKVLFFAWKVTLGRVNTFDRL-LRVKAPLVGPFCCILCRKAEENLDHLLWDCE 181
           LW  K P KV   AW V  G+VNT D+L LR     + P  CILC+   E++DH+   C 
Sbjct: 406 LWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQWCILCKGNGESIDHIFLHCP 454

Query: 182 FARSVWSLFFEV 192
               +W   F +
Sbjct: 466 VTIGIWYRLFNL 454

[Close]

BLAST of Lcy06g010250.1 vs. NCBI nr
Match: XP_022151711.1 (uncharacterized protein LOC111019624 [Momordica charantia])

HSP 1 Score: 133.3 bits (334), Expect = 2.4e-27
Identity = 60/100 (60.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 1   MRDFLWEGVDEGKGAHLVSWKDIGKPMSLGGLEIGNLRTRNRALLAKWLWRFRFKSDSLW 60
           MRDFLWEGV+EG GAHLV+WK++ KP+  GGL +GNLR RN A LAKWLWRF  +  +LW
Sbjct: 196 MRDFLWEGVEEGGGAHLVNWKEVSKPLEAGGLGVGNLRLRNEAFLAKWLWRFFHEPHALW 255

Query: 61  VRIIGSKYDHHPHMWLL-GGVKGTFRNPWKDISLELPSFS 100
            +II SKY+ HP  W+L GG K +  NPWK I+   P FS
Sbjct: 256 RKIIVSKYERHPSDWILAGGSKVSNFNPWKAIASCFPVFS 295

[Close]

BLAST of Lcy06g010250.1 vs. TAIR 10
Match: AT2G02520.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 54.3 bits (129), Expect = 1.3e-07
Identity = 31/82 (37.80%), Postives = 41/82 (50.00%), Query Frame = 0


Query: 108 INPSPVRDYVFSCLW-KIKAPKKVLFFAWKVTLGRVNTFDRLLRVKAPLVGPFCCILCRK 167
           +NP   R   F  +W K K PK   F AW     R++T DR+  +    + P  C+ C  
Sbjct: 34  LNPIGERVDWFKAIWFKGKIPKHA-FIAWVNMRHRLHTKDRM--ISWGFIFPPLCLFCNT 93

Query: 168 AEENLDHLLWDCEFARSVWSLF 189
            +E   HL +DCEFAR VW  F
Sbjct: 94  HDETRQHLFFDCEFAREVWIYF 112

[Close]

BLAST of Lcy06g010250.1 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 51.6 bits (122), Expect = 8.4e-07
Identity = 22/70 (31.43%), Postives = 35/70 (50.00%), Query Frame = 0


Query: 1  MRDFLWEGVDEGKGAHLVSWKDIGKPMSLGGLEIGNLRTRNRALLAKWLWRFRFKSDSLW 60
          + DF W    E KG H  +W  +    + GG+   ++   N ALL K +WR   + +SL 
Sbjct: 25 LADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAFNLALLGKQMWRMLSRPESLM 84

Query: 61 VRIIGSKYDH 71
           ++  S+Y H
Sbjct: 85 AKVFKSRYFH 94

[Close]

BLAST of Lcy06g010250.1 vs. TAIR 10
Match: AT3G25270.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 50.1 bits (118), Expect = 2.4e-06
Identity = 25/78 (32.05%), Postives = 39/78 (50.00%), Query Frame = 0


Query: 108 INPSPVRDYVFSCLWKIKAPKKVLFFAWKVTLGRVNTFDRLLRVKAPLVGPFCCILCRKA 167
           I P P +  + + +WK+K   K+  F WK+  G + T D L R    +     C  C + 
Sbjct: 5   IQPPPGKAEIKAKIWKLKTAPKIKHFLWKLLSGALATGDNLKR--RHIRNHPQCHRCCQE 64

Query: 168 EENLDHLLWDCEFARSVW 186
           +E   HL +DC +A+ VW
Sbjct: 65  DETSQHLFFDCFYAQQVW 80

[Close]

BLAST of Lcy06g010250.1 vs. TAIR 10
Match: AT4G04650.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 43.5 bits (101), Expect = 2.3e-04
Identity = 29/102 (28.43%), Postives = 44/102 (43.14%), Query Frame = 0


Query: 88  WKDISLELPSFSSLVPCTF-LINPSPVRDYVFSCLWKIKAPKKVLFFAWKVTLGRVNTFD 147
           WK   L  PS     P T+  ++P          +W      K  F  W V   R++T D
Sbjct: 100 WK-TDLHAPSNRFSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAFICWVVAWNRLHTRD 159

Query: 148 RLLRVKAPLVGPFCCILCRKAEENLDHLLWDCEFARSVWSLF 189
           RL      +  P  C+LC   +++  HL ++C+F+  VW  F
Sbjct: 160 RLQNWGLSI--PAECLLCNAHDDSRAHLFFECQFSGVVWRFF 198

The following BLAST results are available for this feature:

BLAST of Lcy06g010250.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy06g010250.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C4A7	2.1e-34	49.70	Peroxin Pex14 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7SSQ8	2.1e-29	53.28	Peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 OS=Cucumis melo var. makuwa...	[more]
A0A5A7VJE4	3.9e-28	49.26	zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A438IAY6	6.7e-28	37.50	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]
A0A6J1DFI2	1.1e-27	60.00	uncharacterized protein LOC111019624 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]

BLAST of Lcy06g010250.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06215.1	4.4e-34	49.70	peroxin Pex14 isoform X3 [Cucumis melo var. makuwa]	[more]
KAA0032235.1	4.3e-29	53.28	peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0067918.1	8.1e-28	49.26	hypothetical protein E6C27_scaffold138G00850 [Cucumis melo var. makuwa]	[more]
RVW93876.1	1.4e-27	37.50	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
XP_022151711.1	2.4e-27	60.00	uncharacterized protein LOC111019624 [Momordica charantia]	[more]

BLAST of Lcy06g010250.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G02520.1	1.3e-07	37.80	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT4G29090.1	8.4e-07	31.43	Ribonuclease H-like superfamily protein	[more]
AT3G25270.1	2.4e-06	32.05	Ribonuclease H-like superfamily protein	[more]
AT4G04650.1	2.3e-04	28.43	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 116..185 e-value: 5.0E-16 score: 59.2
None	No IPR available	PANTHER	PTHR33116:SF38	OS01G0158850 PROTEIN	coord: 101..195
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 2..62 coord: 101..195
None	No IPR available	PANTHER	PTHR33116:SF38	OS01G0158850 PROTEIN	coord: 2..62

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy06g010250	Lcy06g010250	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy06g010250.1.exon2	Lcy06g010250.1.exon2	exon
Lcy06g010250.1.exon1	Lcy06g010250.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy06g010250.1.cds2	Lcy06g010250.1.cds2	CDS
Lcy06g010250.1.cds1	Lcy06g010250.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy06g010250.1.utr5p1	Lcy06g010250.1.utr5p1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy06g010250.1	Lcy06g010250.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0003824	catalytic activity