Lcy06g010250.1 (mRNA) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TATGAGAGATTTCCTGTGGGAAGGGGTTGATGAAGGGAAAGGTGCTCACCTGGTGAGTTGGAAGGACATCGGTAAACCTATGAGTCTTGGGGGTCTTGAGATAGGTAATTTGAGAACTCGTAACAGAGCCCTGCTTGCCAAATGGCTTTGGCGTTTTCGCTTCAAATCTGATTCTCTCTGGGTTAGGATTATCGGGAGTAAATACGATCATCATCCTCACATGTGGCTGTTGGGTGGGGTCAAAGGCACCTTCAGGAATCCTTGGAAAGACATCTCGTTGGAGCTCCCCTCTTTCTCTTCCTTGGTCCCGTGCACAGTAGGGGATGGGAGGGACATATTTTTGGGTGGATTTATGGGTGGGGGATTGCTCCCTCTGCTCGTTGTTCCCGCGTCTTTATCATTTATCTTCGATGAAAAATCTCACTGTGGCTGACATCCTTGGCCCTGTGGGGAGCTCCACTTCTTTTTCTTTCGGTTTTCGTTGTTCGTTATCTAATAGAGAAACCACGGACATCACGACCCTTTTATCTTTGCCTGAAGGGGTTATCCTTAGATCGGGCAGGAGGGATATGCACTTTTGGAGTCTCGACCCCTCTGCGGGCTTTTAATGCCGTTCGTTCTTCCAGTTCCTGATCAATCCCTCCCCTGTTAGAGATTATGTTTTTTCGTGCCTATGGAAGATTAAAGCTCCGAAGAAAGTTTTATTCTTTGCTTGGAAGGTCACCTTGGGCCGTGTTAACACTTTTGATAGGCTCTTGAGAGTGAAGGCTCCTTTAGTTGGCCCTTTCTGTTGCATTCTATGTCGGAAGGCAGAGGAAAATCTTGATCATCTGTTATGGGATTGTGAGTTTGCTCGCTCTGTCTGGAGCCTCTTCTTCGAGGTCTTCGAGTTTCAGTTCGCGAGCTAG TATGAGAGATTTCCTGTGGGAAGGGGTTGATGAAGGGAAAGGTGCTCACCTGGTGAGTTGGAAGGACATCGGTAAACCTATGAGTCTTGGGGGTCTTGAGATAGGTAATTTGAGAACTCGTAACAGAGCCCTGCTTGCCAAATGGCTTTGGCGTTTTCGCTTCAAATCTGATTCTCTCTGGGTTAGGATTATCGGGAGTAAATACGATCATCATCCTCACATGTGGCTGTTGGGTGGGGTCAAAGGCACCTTCAGGAATCCTTGGAAAGACATCTCGTTGGAGCTCCCCTCTTTCTCTTCCTTGGTCCCGTGCACATTCCTGATCAATCCCTCCCCTGTTAGAGATTATGTTTTTTCGTGCCTATGGAAGATTAAAGCTCCGAAGAAAGTTTTATTCTTTGCTTGGAAGGTCACCTTGGGCCGTGTTAACACTTTTGATAGGCTCTTGAGAGTGAAGGCTCCTTTAGTTGGCCCTTTCTGTTGCATTCTATGTCGGAAGGCAGAGGAAAATCTTGATCATCTGTTATGGGATTGTGAGTTTGCTCGCTCTGTCTGGAGCCTCTTCTTCGAGGTCTTCGAGTTTCAGTTCGCGAGCTAG ATGAGAGATTTCCTGTGGGAAGGGGTTGATGAAGGGAAAGGTGCTCACCTGGTGAGTTGGAAGGACATCGGTAAACCTATGAGTCTTGGGGGTCTTGAGATAGGTAATTTGAGAACTCGTAACAGAGCCCTGCTTGCCAAATGGCTTTGGCGTTTTCGCTTCAAATCTGATTCTCTCTGGGTTAGGATTATCGGGAGTAAATACGATCATCATCCTCACATGTGGCTGTTGGGTGGGGTCAAAGGCACCTTCAGGAATCCTTGGAAAGACATCTCGTTGGAGCTCCCCTCTTTCTCTTCCTTGGTCCCGTGCACATTCCTGATCAATCCCTCCCCTGTTAGAGATTATGTTTTTTCGTGCCTATGGAAGATTAAAGCTCCGAAGAAAGTTTTATTCTTTGCTTGGAAGGTCACCTTGGGCCGTGTTAACACTTTTGATAGGCTCTTGAGAGTGAAGGCTCCTTTAGTTGGCCCTTTCTGTTGCATTCTATGTCGGAAGGCAGAGGAAAATCTTGATCATCTGTTATGGGATTGTGAGTTTGCTCGCTCTGTCTGGAGCCTCTTCTTCGAGGTCTTCGAGTTTCAGTTCGCGAGCTAG MRDFLWEGVDEGKGAHLVSWKDIGKPMSLGGLEIGNLRTRNRALLAKWLWRFRFKSDSLWVRIIGSKYDHHPHMWLLGGVKGTFRNPWKDISLELPSFSSLVPCTFLINPSPVRDYVFSCLWKIKAPKKVLFFAWKVTLGRVNTFDRLLRVKAPLVGPFCCILCRKAEENLDHLLWDCEFARSVWSLFFEVFEFQFAS Homology
BLAST of Lcy06g010250.1 vs. ExPASy TrEMBL
Match: A0A5D3C4A7 (Peroxin Pex14 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00790 PE=4 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 2.1e-34 Identity = 83/167 (49.70%), Postives = 101/167 (60.48%), Query Frame = 0
BLAST of Lcy06g010250.1 vs. ExPASy TrEMBL
Match: A0A5A7SSQ8 (Peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00550 PE=4 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 2.1e-29 Identity = 65/122 (53.28%), Postives = 85/122 (69.67%), Query Frame = 0
BLAST of Lcy06g010250.1 vs. ExPASy TrEMBL
Match: A0A5A7VJE4 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G00850 PE=4 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 3.9e-28 Identity = 67/136 (49.26%), Postives = 88/136 (64.71%), Query Frame = 0
BLAST of Lcy06g010250.1 vs. ExPASy TrEMBL
Match: A0A438IAY6 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_272 PE=4 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 6.7e-28 Identity = 72/192 (37.50%), Postives = 93/192 (48.44%), Query Frame = 0
BLAST of Lcy06g010250.1 vs. ExPASy TrEMBL
Match: A0A6J1DFI2 (uncharacterized protein LOC111019624 OS=Momordica charantia OX=3673 GN=LOC111019624 PE=4 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 1.1e-27 Identity = 60/100 (60.00%), Postives = 73/100 (73.00%), Query Frame = 0
BLAST of Lcy06g010250.1 vs. NCBI nr
Match: TYK06215.1 (peroxin Pex14 isoform X3 [Cucumis melo var. makuwa]) HSP 1 Score: 155.6 bits (392), Expect = 4.4e-34 Identity = 83/167 (49.70%), Postives = 101/167 (60.48%), Query Frame = 0
BLAST of Lcy06g010250.1 vs. NCBI nr
Match: KAA0032235.1 (peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 139.0 bits (349), Expect = 4.3e-29 Identity = 65/122 (53.28%), Postives = 85/122 (69.67%), Query Frame = 0
BLAST of Lcy06g010250.1 vs. NCBI nr
Match: KAA0067918.1 (hypothetical protein E6C27_scaffold138G00850 [Cucumis melo var. makuwa]) HSP 1 Score: 134.8 bits (338), Expect = 8.1e-28 Identity = 67/136 (49.26%), Postives = 88/136 (64.71%), Query Frame = 0
BLAST of Lcy06g010250.1 vs. NCBI nr
Match: RVW93876.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]) HSP 1 Score: 134.0 bits (336), Expect = 1.4e-27 Identity = 72/192 (37.50%), Postives = 93/192 (48.44%), Query Frame = 0
BLAST of Lcy06g010250.1 vs. NCBI nr
Match: XP_022151711.1 (uncharacterized protein LOC111019624 [Momordica charantia]) HSP 1 Score: 133.3 bits (334), Expect = 2.4e-27 Identity = 60/100 (60.00%), Postives = 73/100 (73.00%), Query Frame = 0
BLAST of Lcy06g010250.1 vs. TAIR 10
Match: AT2G02520.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein ) HSP 1 Score: 54.3 bits (129), Expect = 1.3e-07 Identity = 31/82 (37.80%), Postives = 41/82 (50.00%), Query Frame = 0
BLAST of Lcy06g010250.1 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 51.6 bits (122), Expect = 8.4e-07 Identity = 22/70 (31.43%), Postives = 35/70 (50.00%), Query Frame = 0
BLAST of Lcy06g010250.1 vs. TAIR 10
Match: AT3G25270.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 50.1 bits (118), Expect = 2.4e-06 Identity = 25/78 (32.05%), Postives = 39/78 (50.00%), Query Frame = 0
BLAST of Lcy06g010250.1 vs. TAIR 10
Match: AT4G04650.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein ) HSP 1 Score: 43.5 bits (101), Expect = 2.3e-04 Identity = 29/102 (28.43%), Postives = 44/102 (43.14%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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