Lcy06g004830.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy06g004830.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	protein ROOT INITIATION DEFECTIVE 3-like
Location	Chr06: 4507117 .. 4508602 (-)
Sequence length	828
RNA-Seq Expression	Lcy06g004830.1
Synteny	Lcy06g004830.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAATGGAGGCGAAAGAATGGCGTTGGCTGTGTGCAGCGACAAGAACATGGGATCGGGGATTACGATTTCGGATGTGAAAACAGGCGAAACTCTCCTTCACATTCCGACCTGCGCTTCGCCTCCGTACGGTTTGATTTGCTTGAGAAATGAGTTCCTCGTTGCTTCTCAGACTCGTAAGGAAGGGTCAGTCGGTGGTGGATCCATCTTCATTTGGTCCCTGAACAAGGTATTGAACTATTGATTAATCAGCGAGAAGCCAGCTGAGTCTTTGAAGTTTGAATAGACATTCTCTTTCAGATTCTATCATTGTTTGAATAATCATGGACGATTTGGTTCTTAACAAATGCGCTTTAGTAATCTTGAACTCGAGGAGAATTTTCGTTATCATAGTCCTCTGTACAAGCTCTGTGAAATCCTCCCAATCAATACTGATAATTCACTTGTTCGACTTTAGGGATGATCTAACAATATTTGACCTTAGTCATTGTGCCTTTCAGCCTCAACCCCCTCTTAGGAGCTATCCATTGGAGCCCATTGGACCACTTGCCTCAACAAAGGATAGTGTATATCTTGCAGGCGGAGCTCATTCTGGAAATATTCATCTTTGGGAGGTCAGTATTAGCTGATATTCTCTTATTCTTTATCCAGTATGTGGGTATCTGTATTTGTGACAGATATTGTATCTTATATTTTATCCAATATTGTATATCTGTATGTATGTATGTGAGCATGTACATATACTTCCTTCAGAACTTATAGTTCCCTCTTTTCCCCTATTTTCACCTCAGAGTCTCATTTGGTTGAGGCAATTTGTAGGTTGGTAGTGGTAAATTGCTCAAGCTTTGGAATGGTCACCATAAACCCATAAAATTCATCCTGTTTTCTTGGGACGATTCGTTTCTCATTACTGGTTCAGCCGATGGAATGATTTGTGTCTGGTCCATGATTCGGTAAATACCCCTTCACAGTGCCTTTACAACCTCTTTGATTAAAGCGGTTTAGATAGCTTTTTGTTGTCATGATTTTCCTATCAAACTTTATGCAAGTTTGCTGGATGTGGAACTTGTGGGAAGCTCACAGCCAATACTGTATTGTCTAATGGAACATAAGTCATCTTTAACTGGTCTACTCACTATGTCTGGCTGCTCGATGTCAATAATCATTTCATGCTCCCTCGATGGCAGTTTAAAGGTGGCTAAACAGTAACATTCTATCTATAGTTCCAACTGTTGAGCTATAACAAACTTATAGCTTGATTAACATTGTCTGGGTTGCAGTTTTGGGATTTAATGTCAGGAATGGTCAGGGGAACTCAAGCTCATATAGAAGGGATCACTGCAATTGTTCTTCACCCAACCGAGCAACTCTTGTTCTTTGGGAGCATTGACGGGCAAATTTTTGCTTGCAGGCTTGAATTTGGATTGGATAACTTTATTGCCATTAAAGAAAACCAGTTACTTACACCAAAAGGACACAAGTAA

mRNA sequence

ATGAGCAATGGAGGCGAAAGAATGGCGTTGGCTGTGTGCAGCGACAAGAACATGGGATCGGGGATTACGATTTCGGATGTGAAAACAGGCGAAACTCTCCTTCACATTCCGACCTGCGCTTCGCCTCCGTACGGTTTGATTTGCTTGAGAAATGAGTTCCTCGTTGCTTCTCAGACTCGTAAGGAAGGGTCAGTCGGTGGTGGATCCATCTTCATTTGGTCCCTGAACAAGCCTCAACCCCCTCTTAGGAGCTATCCATTGGAGCCCATTGGACCACTTGCCTCAACAAAGGATAGTGTATATCTTGCAGGCGGAGCTCATTCTGGAAATATTCATCTTTGGGAGGTTGGTAGTGGTAAATTGCTCAAGCTTTGGAATGGTCACCATAAACCCATAAAATTCATCCTGTTTTCTTGGGACGATTCGTTTCTCATTACTGGTTCAGCCGATGGAATGATTTGTGTCTGGTCCATGATTCGTTTGCTGGATGTGGAACTTGTGGGAAGCTCACAGCCAATACTGTATTGTCTAATGGAACATAAGTCATCTTTAACTGGTCTACTCACTATGTCTGGCTGCTCGATGTCAATAATCATTTCATGCTCCCTCGATGGCAGTTTAAAGTTTTGGGATTTAATGTCAGGAATGGTCAGGGGAACTCAAGCTCATATAGAAGGGATCACTGCAATTGTTCTTCACCCAACCGAGCAACTCTTGTTCTTTGGGAGCATTGACGGGCAAATTTTTGCTTGCAGGCTTGAATTTGGATTGGATAACTTTATTGCCATTAAAGAAAACCAGTTACTTACACCAAAAGGACACAAGTAA

Coding sequence (CDS)

ATGAGCAATGGAGGCGAAAGAATGGCGTTGGCTGTGTGCAGCGACAAGAACATGGGATCGGGGATTACGATTTCGGATGTGAAAACAGGCGAAACTCTCCTTCACATTCCGACCTGCGCTTCGCCTCCGTACGGTTTGATTTGCTTGAGAAATGAGTTCCTCGTTGCTTCTCAGACTCGTAAGGAAGGGTCAGTCGGTGGTGGATCCATCTTCATTTGGTCCCTGAACAAGCCTCAACCCCCTCTTAGGAGCTATCCATTGGAGCCCATTGGACCACTTGCCTCAACAAAGGATAGTGTATATCTTGCAGGCGGAGCTCATTCTGGAAATATTCATCTTTGGGAGGTTGGTAGTGGTAAATTGCTCAAGCTTTGGAATGGTCACCATAAACCCATAAAATTCATCCTGTTTTCTTGGGACGATTCGTTTCTCATTACTGGTTCAGCCGATGGAATGATTTGTGTCTGGTCCATGATTCGTTTGCTGGATGTGGAACTTGTGGGAAGCTCACAGCCAATACTGTATTGTCTAATGGAACATAAGTCATCTTTAACTGGTCTACTCACTATGTCTGGCTGCTCGATGTCAATAATCATTTCATGCTCCCTCGATGGCAGTTTAAAGTTTTGGGATTTAATGTCAGGAATGGTCAGGGGAACTCAAGCTCATATAGAAGGGATCACTGCAATTGTTCTTCACCCAACCGAGCAACTCTTGTTCTTTGGGAGCATTGACGGGCAAATTTTTGCTTGCAGGCTTGAATTTGGATTGGATAACTTTATTGCCATTAAAGAAAACCAGTTACTTACACCAAAAGGACACAAGTAA

Protein sequence

MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSVYLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIISCSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK

Homology

[Close]

BLAST of Lcy06g004830.1 vs. ExPASy Swiss-Prot
Match: Q9M3B4 (Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.9e-42
Identity = 96/244 (39.34%), Postives = 137/244 (56.15%), Query Frame = 0


Query: 8   MALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGG 67
           M + V +  ++  GI   D+KTG   L    CASP +GL  +  +FL +SQ     +   
Sbjct: 1   MEITVIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSARNT--S 60

Query: 68  GSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSVYLAGGAHSGNIHLWEVGSGKLLKLWNG 127
           GSIF WS  KPQ  ++SYP+EPI  LA+  +  YL GG  SG+I+LWEV +GKLLK W+G
Sbjct: 61  GSIFYWSWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHG 120

Query: 128 HHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILY--CLMEHKSSLT 187
           H++ +  ++FS DDS L++GS DG I VWS+IRL D +        LY     EH  S+T
Sbjct: 121 HYRSVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFD-DFQRQQGNTLYEHNFNEHTMSVT 180

Query: 188 GLLTMSGCSMSIIISCSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSID 247
            ++   G   ++IIS S D + K W L  G +         I A+ L P   + + G+ D
Sbjct: 181 DIVIDYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARD 240

Query: 248 GQIF 250
            +I+
Sbjct: 241 SKIY 241

[Close]

BLAST of Lcy06g004830.1 vs. ExPASy Swiss-Prot
Match: A0A1L8HX76 (WD repeat-containing protein 18 OS=Xenopus laevis OX=8355 GN=wdr18 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.9e-20
Identity = 64/228 (28.07%), Postives = 111/228 (48.68%), Query Frame = 0


Query: 23  TISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSL-NKPQPP 82
           T+ +  TG  LL      +   GL  L  ++L+       G +G   I +W L  + Q  
Sbjct: 21  TVWEPVTGSVLLTYRGGNTSHRGLAVLGGQYLLG------GQLGKNYINVWELQRRDQLQ 80

Query: 83  LRSYPLEPIGPLASTKDSVYLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDD 142
            +     P+  L+++ + +YL  G  + +I+LWEV +G LL + N H++ +  + F+ D 
Sbjct: 81  QKIVCPGPVNCLSASPNGLYLVAGI-AESIYLWEVSTGHLLAILNSHYQDVTCLTFTDDS 140

Query: 143 SFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIISC 202
           S +I+G+ D ++ VW +  +L VE     +P  Y    H   +T +    G   + + + 
Sbjct: 141 SHIISGAKDSLVLVWGLYSVLQVETSRGPEP-RYVWSRHSLPITDVQCGIGGPQARVATS 200

Query: 203 SLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSIDGQIF 250
           SLD ++K WD+ SG +  +      IT++   P E  LF G  DG I+
Sbjct: 201 SLDQTIKLWDICSGDLLVSVLFDVRITSVAFDPAEYHLFCGGSDGVIY 240

[Close]

BLAST of Lcy06g004830.1 vs. ExPASy Swiss-Prot
Match: Q3SZD4 (WD repeat-containing protein 18 OS=Bos taurus OX=9913 GN=WDR18 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.5e-19
Identity = 68/244 (27.87%), Postives = 117/244 (47.95%), Query Frame = 0


Query: 8   MALAVCSDKNMGS-GITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVG 67
           M +AVC+D         + ++ +G  LL      + P GL  L  E+L+A+Q      +G
Sbjct: 5   MEVAVCTDSAAQLWSCVVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ------LG 64

Query: 68  GGSIFIWSL-NKPQPPLRSYPLEPIGPLASTKDSVYLAGGAHSGNIHLWEVGSGKLLKLW 127
              I  W L  K Q   +     P+  L ++ + +Y+  G  S NI+LWEV +G LL + 
Sbjct: 65  KNYICAWELQRKDQLQQKIMCPGPVTCLTTSPNGLYVLAGI-SENIYLWEVSTGNLLVIL 124

Query: 128 NGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLT 187
           + H++ +  + F+ D S  I+G  D ++  WS+  +L  +   +  P  +    H   +T
Sbjct: 125 SRHYQDVSCLQFTGDSSHFISGGKDCLVLAWSLCSVLQADPSRTPAP-RHVWSRHTLPIT 184

Query: 188 GLLTMSGCSMSIIISCSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSID 247
            L    G  ++ + + SLD ++K W++ SG +  +     GI A+ +   E  +F G  D
Sbjct: 185 DLHCGFGGPLARVATASLDQTVKLWEVSSGELLLSVLFDVGILAVTMDLAEHYMFCGGSD 240

Query: 248 GQIF 250
           G IF
Sbjct: 245 GSIF 240

[Close]

BLAST of Lcy06g004830.1 vs. ExPASy Swiss-Prot
Match: Q9BV38 (WD repeat-containing protein 18 OS=Homo sapiens OX=9606 GN=WDR18 PE=1 SV=2)

HSP 1 Score: 93.6 bits (231), Expect = 3.8e-18
Identity = 69/245 (28.16%), Postives = 119/245 (48.57%), Query Frame = 0


Query: 8   MALAVCSDK--NMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSV 67
           M +AVC+D    M S I + ++ +G  LL      + P GL  L  E+L+A+Q      +
Sbjct: 5   MEVAVCTDSAAPMWSCI-VWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ------L 64

Query: 68  GGGSIFIWSL-NKPQPPLRSYPLEPIGPLASTKDSVYLAGGAHSGNIHLWEVGSGKLLKL 127
           G   I  W L  K Q   +     P+  L ++ + +Y+  G  + +IHLWEV +G LL +
Sbjct: 65  GKNYISAWELQRKDQLQQKIMCPGPVTCLTASPNGLYVLAGV-AESIHLWEVSTGNLLVI 124

Query: 128 WNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSL 187
            + H++ +  + F+ D S  I+G  D ++ VWS+  +L  +      P  +    H   +
Sbjct: 125 LSRHYQDVSCLQFTGDSSHFISGGKDCLVLVWSLCSVLQADPSRIPAP-RHVWSHHALPI 184

Query: 188 TGLLTMSGCSMSIIISCSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSI 247
           T L    G  ++ + + SLD ++K W++ SG +  +      I A+ +   E  +F G  
Sbjct: 185 TDLHCGFGGPLARVATSSLDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHMFCGGS 240

Query: 248 DGQIF 250
           +G IF
Sbjct: 245 EGSIF 240

[Close]

BLAST of Lcy06g004830.1 vs. ExPASy Swiss-Prot
Match: Q4PHV3 (Pre-rRNA-processing protein IPI3 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=IPI3 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 9.6e-14
Identity = 50/158 (31.65%), Postives = 82/158 (51.90%), Query Frame = 0


Query: 93  LASTKDSVYLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGM 152
           +A + +   +AGG+  G I LW++ +G LL  ++ H++ +  + ++ D + L+TGS D  
Sbjct: 109 IACSPNGDLVAGGSFDGRILLWQIATGDLLASFDAHYRSVTVLKWTCDGAGLLTGSEDAR 168

Query: 153 ICVWSMIRLLDVELVGSS-------QPILYC-LMEHKSSLTGLLTMSG--CSMSIIISCS 212
           I VWS+  LL      SS        P  YC L +H  ++T L   SG     ++++S S
Sbjct: 169 ILVWSLAGLLAPHDQTSSSITSSEHNPAPYCTLADHNLAITDLDISSGRFPHQAMVLSSS 228

Query: 213 LDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLF 241
            D S+K WDL +  +  T    + I  +VL  TE+  F
Sbjct: 229 SDASVKLWDLRTRSLLSTFVFEQPIHRVVLDCTERFFF 266

[Close]

BLAST of Lcy06g004830.1 vs. ExPASy TrEMBL
Match: A0A0A0LR59 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G050390 PE=4 SV=1)

HSP 1 Score: 501.1 bits (1289), Expect = 2.9e-138
Identity = 237/275 (86.18%), Postives = 253/275 (92.00%), Query Frame = 0


Query: 1   MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTR 60
           M NGGE MALAVCSD+NMG GITI DVKTG+TLLHIPTCASPPYG ICLRNEF VASQTR
Sbjct: 1   MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPTCASPPYGFICLRNEFFVASQTR 60

Query: 61  KEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSVYLAGGAHSGNIHLWEVGSGK 120
           KEGSVGGGSIFIWSLNKP PP+ SY LE IGPLASTKD VYLAGG HSGNIHLWEVGSG+
Sbjct: 61  KEGSVGGGSIFIWSLNKPLPPVTSYTLETIGPLASTKDGVYLAGGTHSGNIHLWEVGSGE 120

Query: 121 LLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEH 180
           LLKLW+GHHKP+K +LFSWDDSFLITGS+DGMICVWSMI LLDVELVG+SQPI+YCLMEH
Sbjct: 121 LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVGNSQPIVYCLMEH 180

Query: 181 KSSLTGLLTMSGCSMSIIISCSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLF 240
            SSLTGLLTMSGCSMSIIIS SLDGSLKFWDLMSGM+RGTQAHIEGITAIVLHPTEQ+LF
Sbjct: 181 NSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAIVLHPTEQVLF 240

Query: 241 FGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK 276
            G++DGQIFA RLEFG DN I I+ENQ+L PKGHK
Sbjct: 241 SGTVDGQIFASRLEFGFDNCITIRENQILAPKGHK 275

[Close]

BLAST of Lcy06g004830.1 vs. ExPASy TrEMBL
Match: A0A6J1GSK9 (protein ROOT INITIATION DEFECTIVE 3-like OS=Cucurbita moschata OX=3662 GN=LOC111457062 PE=4 SV=1)

HSP 1 Score: 495.7 bits (1275), Expect = 1.2e-136
Identity = 239/275 (86.91%), Postives = 252/275 (91.64%), Query Frame = 0


Query: 1   MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTR 60
           MSN GE MALAVCSDKNMGSGITI D KTGETLLHIPTCASP YGLI LRNEFLVASQTR
Sbjct: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60

Query: 61  KEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSVYLAGGAHSGNIHLWEVGSGK 120
           KEGSVGGGS+F+WSL+KPQ PLRSYPLEPIGPLASTKD  YLAGGAHSGNIHLWEVGSGK
Sbjct: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGAYLAGGAHSGNIHLWEVGSGK 120

Query: 121 LLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEH 180
           LLKLW+GHHKPIKFILFSWDDSFLITGSADGMICVWSMI LLDVELVGS+QPILYCLMEH
Sbjct: 121 LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEH 180

Query: 181 KSSLTGLLTMSGCSMSIIISCSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLF 240
           KSSLTGL+TMSG SMS+IIS SLDGSLKFWDLMSGM+RGTQ H+EGIT IVLHPTEQ LF
Sbjct: 181 KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLF 240

Query: 241 FGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK 276
            G++DG+IFA RLEFGLDN I IKE+QL    GHK
Sbjct: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHK 275

[Close]

BLAST of Lcy06g004830.1 vs. ExPASy TrEMBL
Match: A0A5D3BJZ3 (Protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004600 PE=4 SV=1)

HSP 1 Score: 495.4 bits (1274), Expect = 1.6e-136
Identity = 233/275 (84.73%), Postives = 253/275 (92.00%), Query Frame = 0


Query: 1   MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTR 60
           M NGGE MALAVCSD+NMG GITI DVKTG+TLLHIP+CASPPYG ICLRNEF VASQTR
Sbjct: 1   MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPSCASPPYGFICLRNEFFVASQTR 60

Query: 61  KEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSVYLAGGAHSGNIHLWEVGSGK 120
           KEGSVGGG+IFIWSLNKPQPP+ SY LE IGPLASTKDSVYLAGG HSGNIHLWEVGSGK
Sbjct: 61  KEGSVGGGTIFIWSLNKPQPPVMSYTLETIGPLASTKDSVYLAGGTHSGNIHLWEVGSGK 120

Query: 121 LLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEH 180
           LLKLW+GHHKP+K +LFSWDDSFLITGS+DGMICVWSMI LLDVELV +SQP++YCLM+H
Sbjct: 121 LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVENSQPLVYCLMQH 180

Query: 181 KSSLTGLLTMSGCSMSIIISCSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLF 240
           KSSLTGLLTMSGCSMSIIIS SLDGSLKFWDLMSGM++GTQAHIEGITAIVLHPTEQ+LF
Sbjct: 181 KSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIKGTQAHIEGITAIVLHPTEQVLF 240

Query: 241 FGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK 276
            G++DGQI A RLE G DN I +KENQ+L PKGHK
Sbjct: 241 SGTVDGQISASRLELGFDNCITVKENQILAPKGHK 275

[Close]

BLAST of Lcy06g004830.1 vs. ExPASy TrEMBL
Match: A0A5A7UJJ9 (Protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G001670 PE=4 SV=1)

HSP 1 Score: 495.4 bits (1274), Expect = 1.6e-136
Identity = 233/275 (84.73%), Postives = 253/275 (92.00%), Query Frame = 0


Query: 1   MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTR 60
           M NGGE MALAVCSD+NMG GITI DVKTG+TLLHIP+CASPPYG ICLRNEF VASQTR
Sbjct: 1   MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPSCASPPYGFICLRNEFFVASQTR 60

Query: 61  KEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSVYLAGGAHSGNIHLWEVGSGK 120
           KEGSVGGG+IFIWSLNKPQPP+ SY LE IGPLASTKDSVYLAGG HSGNIHLWEVGSGK
Sbjct: 61  KEGSVGGGTIFIWSLNKPQPPVMSYTLETIGPLASTKDSVYLAGGTHSGNIHLWEVGSGK 120

Query: 121 LLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEH 180
           LLKLW+GHHKP+K +LFSWDDSFLITGS+DGMICVWSMI LLDVELV +SQP++YCLM+H
Sbjct: 121 LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVENSQPLVYCLMQH 180

Query: 181 KSSLTGLLTMSGCSMSIIISCSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLF 240
           KSSLTGLLTMSGCSMSIIIS SLDGSLKFWDLMSGM++GTQAHIEGITAIVLHPTEQ+LF
Sbjct: 181 KSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIKGTQAHIEGITAIVLHPTEQVLF 240

Query: 241 FGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK 276
            G++DGQI A RLE G DN I +KENQ+L PKGHK
Sbjct: 241 SGTVDGQISASRLELGFDNCITVKENQILAPKGHK 275

[Close]

BLAST of Lcy06g004830.1 vs. ExPASy TrEMBL
Match: A0A1S4DUX3 (protein ROOT INITIATION DEFECTIVE 3-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484316 PE=4 SV=1)

HSP 1 Score: 495.4 bits (1274), Expect = 1.6e-136
Identity = 233/275 (84.73%), Postives = 253/275 (92.00%), Query Frame = 0


Query: 1   MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTR 60
           M NGGE MALAVCSD+NMG GITI DVKTG+TLLHIP+CASPPYG ICLRNEF VASQTR
Sbjct: 91  MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPSCASPPYGFICLRNEFFVASQTR 150

Query: 61  KEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSVYLAGGAHSGNIHLWEVGSGK 120
           KEGSVGGG+IFIWSLNKPQPP+ SY LE IGPLASTKDSVYLAGG HSGNIHLWEVGSGK
Sbjct: 151 KEGSVGGGTIFIWSLNKPQPPVMSYTLETIGPLASTKDSVYLAGGTHSGNIHLWEVGSGK 210

Query: 121 LLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEH 180
           LLKLW+GHHKP+K +LFSWDDSFLITGS+DGMICVWSMI LLDVELV +SQP++YCLM+H
Sbjct: 211 LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVENSQPLVYCLMQH 270

Query: 181 KSSLTGLLTMSGCSMSIIISCSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLF 240
           KSSLTGLLTMSGCSMSIIIS SLDGSLKFWDLMSGM++GTQAHIEGITAIVLHPTEQ+LF
Sbjct: 271 KSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIKGTQAHIEGITAIVLHPTEQVLF 330

Query: 241 FGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK 276
            G++DGQI A RLE G DN I +KENQ+L PKGHK
Sbjct: 331 SGTVDGQISASRLELGFDNCITVKENQILAPKGHK 365

[Close]

BLAST of Lcy06g004830.1 vs. NCBI nr
Match: XP_031738866.1 (protein ROOT INITIATION DEFECTIVE 3 [Cucumis sativus])

HSP 1 Score: 501.1 bits (1289), Expect = 6.0e-138
Identity = 237/275 (86.18%), Postives = 253/275 (92.00%), Query Frame = 0


Query: 1   MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTR 60
           M NGGE MALAVCSD+NMG GITI DVKTG+TLLHIPTCASPPYG ICLRNEF VASQTR
Sbjct: 11  MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPTCASPPYGFICLRNEFFVASQTR 70

Query: 61  KEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSVYLAGGAHSGNIHLWEVGSGK 120
           KEGSVGGGSIFIWSLNKP PP+ SY LE IGPLASTKD VYLAGG HSGNIHLWEVGSG+
Sbjct: 71  KEGSVGGGSIFIWSLNKPLPPVTSYTLETIGPLASTKDGVYLAGGTHSGNIHLWEVGSGE 130

Query: 121 LLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEH 180
           LLKLW+GHHKP+K +LFSWDDSFLITGS+DGMICVWSMI LLDVELVG+SQPI+YCLMEH
Sbjct: 131 LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVGNSQPIVYCLMEH 190

Query: 181 KSSLTGLLTMSGCSMSIIISCSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLF 240
            SSLTGLLTMSGCSMSIIIS SLDGSLKFWDLMSGM+RGTQAHIEGITAIVLHPTEQ+LF
Sbjct: 191 NSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAIVLHPTEQVLF 250

Query: 241 FGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK 276
            G++DGQIFA RLEFG DN I I+ENQ+L PKGHK
Sbjct: 251 SGTVDGQIFASRLEFGFDNCITIRENQILAPKGHK 285

[Close]

BLAST of Lcy06g004830.1 vs. NCBI nr
Match: KGN64400.1 (hypothetical protein Csa_013691 [Cucumis sativus])

HSP 1 Score: 501.1 bits (1289), Expect = 6.0e-138
Identity = 237/275 (86.18%), Postives = 253/275 (92.00%), Query Frame = 0


Query: 1   MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTR 60
           M NGGE MALAVCSD+NMG GITI DVKTG+TLLHIPTCASPPYG ICLRNEF VASQTR
Sbjct: 1   MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPTCASPPYGFICLRNEFFVASQTR 60

Query: 61  KEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSVYLAGGAHSGNIHLWEVGSGK 120
           KEGSVGGGSIFIWSLNKP PP+ SY LE IGPLASTKD VYLAGG HSGNIHLWEVGSG+
Sbjct: 61  KEGSVGGGSIFIWSLNKPLPPVTSYTLETIGPLASTKDGVYLAGGTHSGNIHLWEVGSGE 120

Query: 121 LLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEH 180
           LLKLW+GHHKP+K +LFSWDDSFLITGS+DGMICVWSMI LLDVELVG+SQPI+YCLMEH
Sbjct: 121 LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVGNSQPIVYCLMEH 180

Query: 181 KSSLTGLLTMSGCSMSIIISCSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLF 240
            SSLTGLLTMSGCSMSIIIS SLDGSLKFWDLMSGM+RGTQAHIEGITAIVLHPTEQ+LF
Sbjct: 181 NSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAIVLHPTEQVLF 240

Query: 241 FGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK 276
            G++DGQIFA RLEFG DN I I+ENQ+L PKGHK
Sbjct: 241 SGTVDGQIFASRLEFGFDNCITIRENQILAPKGHK 275

[Close]

BLAST of Lcy06g004830.1 vs. NCBI nr
Match: XP_038894087.1 (protein ROOT INITIATION DEFECTIVE 3-like isoform X3 [Benincasa hispida])

HSP 1 Score: 499.2 bits (1284), Expect = 2.3e-137
Identity = 240/275 (87.27%), Postives = 253/275 (92.00%), Query Frame = 0


Query: 1   MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTR 60
           M   GE+M LA+CSD+NMGSGITI DVKTG+TLLHIPTCASPPYGLICLRNEFLVASQTR
Sbjct: 1   MGYDGEKMVLAMCSDRNMGSGITIWDVKTGQTLLHIPTCASPPYGLICLRNEFLVASQTR 60

Query: 61  KEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSVYLAGGAHSGNIHLWEVGSGK 120
           KEGSVGGGSIFIWSLNKPQPP+ SY LEPIGPLASTKDSVYLAGG HSGNIHLWEVGSGK
Sbjct: 61  KEGSVGGGSIFIWSLNKPQPPIMSYTLEPIGPLASTKDSVYLAGGTHSGNIHLWEVGSGK 120

Query: 121 LLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEH 180
           LLK+W+G  KPIK +LFSWDDSFLITGSADGMICVWSMI LLDVELVG+SQPILYCLMEH
Sbjct: 121 LLKIWSGQRKPIKCVLFSWDDSFLITGSADGMICVWSMIGLLDVELVGNSQPILYCLMEH 180

Query: 181 KSSLTGLLTMSGCSMSIIISCSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLF 240
            SSLTGLLTMSGCSMSIIIS SL+GSLKFWDLMSGM+RGTQAH EGITAIVLHPTEQLLF
Sbjct: 181 NSSLTGLLTMSGCSMSIIISSSLNGSLKFWDLMSGMIRGTQAHTEGITAIVLHPTEQLLF 240

Query: 241 FGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK 276
            G+ DG+IFA RL FGLDN I IKENQLL PKGHK
Sbjct: 241 SGTADGRIFASRLAFGLDNCITIKENQLLAPKGHK 275

[Close]

BLAST of Lcy06g004830.1 vs. NCBI nr
Match: XP_038894085.1 (protein ROOT INITIATION DEFECTIVE 3-like isoform X1 [Benincasa hispida])

HSP 1 Score: 499.2 bits (1284), Expect = 2.3e-137
Identity = 240/275 (87.27%), Postives = 253/275 (92.00%), Query Frame = 0


Query: 1   MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTR 60
           M   GE+M LA+CSD+NMGSGITI DVKTG+TLLHIPTCASPPYGLICLRNEFLVASQTR
Sbjct: 1   MGYDGEKMVLAMCSDRNMGSGITIWDVKTGQTLLHIPTCASPPYGLICLRNEFLVASQTR 60

Query: 61  KEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSVYLAGGAHSGNIHLWEVGSGK 120
           KEGSVGGGSIFIWSLNKPQPP+ SY LEPIGPLASTKDSVYLAGG HSGNIHLWEVGSGK
Sbjct: 61  KEGSVGGGSIFIWSLNKPQPPIMSYTLEPIGPLASTKDSVYLAGGTHSGNIHLWEVGSGK 120

Query: 121 LLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEH 180
           LLK+W+G  KPIK +LFSWDDSFLITGSADGMICVWSMI LLDVELVG+SQPILYCLMEH
Sbjct: 121 LLKIWSGQRKPIKCVLFSWDDSFLITGSADGMICVWSMIGLLDVELVGNSQPILYCLMEH 180

Query: 181 KSSLTGLLTMSGCSMSIIISCSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLF 240
            SSLTGLLTMSGCSMSIIIS SL+GSLKFWDLMSGM+RGTQAH EGITAIVLHPTEQLLF
Sbjct: 181 NSSLTGLLTMSGCSMSIIISSSLNGSLKFWDLMSGMIRGTQAHTEGITAIVLHPTEQLLF 240

Query: 241 FGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK 276
            G+ DG+IFA RL FGLDN I IKENQLL PKGHK
Sbjct: 241 SGTADGRIFASRLAFGLDNCITIKENQLLAPKGHK 275

[Close]

BLAST of Lcy06g004830.1 vs. NCBI nr
Match: KAG6573122.1 (Protein ROOT INITIATION DEFECTIVE 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 497.3 bits (1279), Expect = 8.6e-137
Identity = 240/275 (87.27%), Postives = 253/275 (92.00%), Query Frame = 0


Query: 1   MSNGGERMALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTR 60
           MSN GE MALAVCSDKNMGSGITI D KTGETLLHIPTCASP YGLI LRNEFLVASQTR
Sbjct: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60

Query: 61  KEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSVYLAGGAHSGNIHLWEVGSGK 120
           KEGSVGGGS+F+WSL+KPQ PLRSYPLEPIGPLASTKD VYLAGGAHSGNIHLWEVGSGK
Sbjct: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGK 120

Query: 121 LLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEH 180
           LLKLW+GHHKPIKFILFSWDDSFLITGSADGMICVWSMI LLDVELVGS+QPILYCLMEH
Sbjct: 121 LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEH 180

Query: 181 KSSLTGLLTMSGCSMSIIISCSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLF 240
           KSSLTGL+TMSG SMS+IIS SLDGSLKFWDLMSGM+RGTQ H+EGIT IVLHPTEQ LF
Sbjct: 181 KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLF 240

Query: 241 FGSIDGQIFACRLEFGLDNFIAIKENQLLTPKGHK 276
            G++DG+IFA RLEFGLDN I IKE+QL    GHK
Sbjct: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHK 275

[Close]

BLAST of Lcy06g004830.1 vs. TAIR 10
Match: AT3G49180.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 173.7 bits (439), Expect = 2.0e-43
Identity = 96/244 (39.34%), Postives = 137/244 (56.15%), Query Frame = 0


Query: 8   MALAVCSDKNMGSGITISDVKTGETLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGG 67
           M + V +  ++  GI   D+KTG   L    CASP +GL  +  +FL +SQ     +   
Sbjct: 1   MEITVIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSARNT--S 60

Query: 68  GSIFIWSLNKPQPPLRSYPLEPIGPLASTKDSVYLAGGAHSGNIHLWEVGSGKLLKLWNG 127
           GSIF WS  KPQ  ++SYP+EPI  LA+  +  YL GG  SG+I+LWEV +GKLLK W+G
Sbjct: 61  GSIFYWSWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHG 120

Query: 128 HHKPIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILY--CLMEHKSSLT 187
           H++ +  ++FS DDS L++GS DG I VWS+IRL D +        LY     EH  S+T
Sbjct: 121 HYRSVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFD-DFQRQQGNTLYEHNFNEHTMSVT 180

Query: 188 GLLTMSGCSMSIIISCSLDGSLKFWDLMSGMVRGTQAHIEGITAIVLHPTEQLLFFGSID 247
            ++   G   ++IIS S D + K W L  G +         I A+ L P   + + G+ D
Sbjct: 181 DIVIDYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARD 240

Query: 248 GQIF 250
            +I+
Sbjct: 241 SKIY 241

[Close]

BLAST of Lcy06g004830.1 vs. TAIR 10
Match: AT3G49660.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 65.1 bits (157), Expect = 1.0e-10
Identity = 37/160 (23.12%), Postives = 74/160 (46.25%), Query Frame = 0


Query: 88  EPIGPLASTKDSVYLAGGAHSGNIHLWEVGSGKLLK-LWNGHHKPIKFILFSWDDSFLIT 147
           +P+  +   +D   +   ++ G   +W+ G+G  +K L +  + P+ F+ FS +  F++ 
Sbjct: 156 DPVTAVDFNRDGSLIVSSSYDGLCRIWDSGTGHCVKTLIDDENPPVSFVRFSPNGKFILV 215

Query: 148 GSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIISCSLDGS 207
           G+ D  + +W++     ++         YC+    S   G   +SG         S D  
Sbjct: 216 GTLDNTLRLWNISSAKFLKTYTGHVNAQYCISSAFSVTNGKRIVSG---------SEDNC 275

Query: 208 LKFWDLMS-GMVRGTQAHIEGITAIVLHPTEQLLFFGSID 246
           +  W+L S  +++  + H E +  +  HPTE L+  GS+D
Sbjct: 276 VHMWELNSKKLLQKLEGHTETVMNVACHPTENLIASGSLD 306

[Close]

BLAST of Lcy06g004830.1 vs. TAIR 10
Match: AT1G11160.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 5.6e-09
Identity = 38/147 (25.85%), Postives = 70/147 (47.62%), Query Frame = 0


Query: 101 YLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIR 160
           +LA G+   N+ +W+      ++ + GH + I  I FS D  ++++G  D ++ VW +  
Sbjct: 114 FLASGSSDTNLRVWDTRKKGCIQTYKGHTRGISTIEFSPDGRWVVSGGLDNVVKVWDL-- 173

Query: 161 LLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIISCSLDGSLKFWDLMS-GMVRG 220
                   ++  +L+    H+  +  L         ++ + S D ++KFWDL +  ++  
Sbjct: 174 --------TAGKLLHEFKCHEGPIRSLDFHP--LEFLLATGSADRTVKFWDLETFELIGT 233

Query: 221 TQAHIEGITAIVLHPTEQLLFFGSIDG 247
           T+    G+ AI  HP  Q LF G  DG
Sbjct: 234 TRPEATGVRAIAFHPDGQTLFCGLDDG 248

[Close]

BLAST of Lcy06g004830.1 vs. TAIR 10
Match: AT5G25150.1 (TBP-associated factor 5 )

HSP 1 Score: 56.6 bits (135), Expect = 3.6e-08
Identity = 38/144 (26.39%), Postives = 72/144 (50.00%), Query Frame = 0


Query: 72  IWSLNKPQP-PLRSYPLEPIGPLASTKDSVYLAGGAHSGNIHLWEVGSGKLLKLWNGHHK 131
           IWS+++ QP  + +  L  +  +    +  Y+A G+    + LW+V +G+ ++++ GH  
Sbjct: 486 IWSMDRIQPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQTGECVRIFIGHRS 545

Query: 132 PIKFILFSWDDSFLITGSADGMICVWSMIRLLDVELVGSSQPILYCLMEHKSSLTGLLTM 191
            +  +  S D  ++ +G  DG I +W +          S+   +  LM H S +   L+ 
Sbjct: 546 MVLSLAMSPDGRYMASGDEDGTIMMWDL----------STARCITPLMGHNSCVWS-LSY 605

Query: 192 SGCSMSIIISCSLDGSLKFWDLMS 215
           SG   S++ S S D ++K WD+ S
Sbjct: 606 SG-EGSLLASGSADCTVKLWDVTS 617

[Close]

BLAST of Lcy06g004830.1 vs. TAIR 10
Match: AT1G61210.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 4.7e-08
Identity = 34/146 (23.29%), Postives = 70/146 (47.95%), Query Frame = 0


Query: 101 YLAGGAHSGNIHLWEVGSGKLLKLWNGHHKPIKFILFSWDDSFLITGSADGMICVWSMIR 160
           +LA G+   N+ +W++     ++ + GH + I  I F+ D  ++++G  D ++ VW +  
Sbjct: 114 FLASGSSDANLKIWDIRKKGCIQTYKGHSRGISTIRFTPDGRWVVSGGLDNVVKVWDL-- 173

Query: 161 LLDVELVGSSQPILYCLMEHKSSLTGLLTMSGCSMSIIISCSLDGSLKFWDLMS-GMVRG 220
                   ++  +L+    H+  +  L         ++ + S D ++KFWDL +  ++  
Sbjct: 174 --------TAGKLLHEFKFHEGPIRSLDFHP--LEFLLATGSADRTVKFWDLETFELIGS 233

Query: 221 TQAHIEGITAIVLHPTEQLLFFGSID 246
           T+    G+ +I  HP  + LF G  D
Sbjct: 234 TRPEATGVRSIKFHPDGRTLFCGLDD 247

The following BLAST results are available for this feature:

BLAST of Lcy06g004830.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M3B4	2.9e-42	39.34	Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1...	[more]
A0A1L8HX76	6.9e-20	28.07	WD repeat-containing protein 18 OS=Xenopus laevis OX=8355 GN=wdr18 PE=3 SV=1	[more]
Q3SZD4	1.5e-19	27.87	WD repeat-containing protein 18 OS=Bos taurus OX=9913 GN=WDR18 PE=2 SV=1	[more]
Q9BV38	3.8e-18	28.16	WD repeat-containing protein 18 OS=Homo sapiens OX=9606 GN=WDR18 PE=1 SV=2	[more]
Q4PHV3	9.6e-14	31.65	Pre-rRNA-processing protein IPI3 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=...	[more]

BLAST of Lcy06g004830.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LR59	2.9e-138	86.18	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G...	[more]
A0A6J1GSK9	1.2e-136	86.91	protein ROOT INITIATION DEFECTIVE 3-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A5D3BJZ3	1.6e-136	84.73	Protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo var. makuwa ...	[more]
A0A5A7UJJ9	1.6e-136	84.73	Protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo var. makuwa ...	[more]
A0A1S4DUX3	1.6e-136	84.73	protein ROOT INITIATION DEFECTIVE 3-like isoform X1 OS=Cucumis melo OX=3656 GN=L...	[more]

BLAST of Lcy06g004830.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031738866.1	6.0e-138	86.18	protein ROOT INITIATION DEFECTIVE 3 [Cucumis sativus]	[more]
KGN64400.1	6.0e-138	86.18	hypothetical protein Csa_013691 [Cucumis sativus]	[more]
XP_038894087.1	2.3e-137	87.27	protein ROOT INITIATION DEFECTIVE 3-like isoform X3 [Benincasa hispida]	[more]
XP_038894085.1	2.3e-137	87.27	protein ROOT INITIATION DEFECTIVE 3-like isoform X1 [Benincasa hispida]	[more]
KAG6573122.1	8.6e-137	87.27	Protein ROOT INITIATION DEFECTIVE 3, partial [Cucurbita argyrosperma subsp. soro...	[more]

BLAST of Lcy06g004830.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49180.1	2.0e-43	39.34	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G49660.1	1.0e-10	23.13	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G11160.1	5.6e-09	25.85	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G25150.1	3.6e-08	26.39	TBP-associated factor 5	[more]
AT1G61210.1	4.7e-08	23.29	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 214..252 e-value: 8.9 score: 11.0 coord: 78..115 e-value: 150.0 score: 3.3 coord: 118..157 e-value: 2.5E-6 score: 37.0 coord: 170..211 e-value: 0.13 score: 21.3
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 120..157 e-value: 2.8E-4 score: 21.6
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 125..158 score: 11.310488
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 164..275 e-value: 4.2E-10 score: 41.0
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 2..162 e-value: 2.7E-17 score: 65.1
None	No IPR available	PANTHER	PTHR18763:SF4	PROTEIN ROOT INITIATION DEFECTIVE 3-LIKE	coord: 7..275
None	No IPR available	PANTHER	PTHR18763	WD-REPEAT PROTEIN 18	coord: 7..275
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 125..158 score: 9.467419
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 198..212
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 10..254

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy06g004830	Lcy06g004830	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy06g004830.1.exon5	Lcy06g004830.1.exon5	exon
Lcy06g004830.1.exon4	Lcy06g004830.1.exon4	exon
Lcy06g004830.1.exon3	Lcy06g004830.1.exon3	exon
Lcy06g004830.1.exon2	Lcy06g004830.1.exon2	exon
Lcy06g004830.1.exon1	Lcy06g004830.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy06g004830.1.cds5	Lcy06g004830.1.cds5	CDS
Lcy06g004830.1.cds4	Lcy06g004830.1.cds4	CDS
Lcy06g004830.1.cds3	Lcy06g004830.1.cds3	CDS
Lcy06g004830.1.cds2	Lcy06g004830.1.cds2	CDS
Lcy06g004830.1.cds1	Lcy06g004830.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy06g004830.1	Lcy06g004830.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030174	regulation of DNA-dependent DNA replication initiation
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005656	nuclear pre-replicative complex
cellular_component	GO:0097344	Rix1 complex
molecular_function	GO:0005515	protein binding