Lcy05g019910.1 (mRNA) Sponge gourd (P93075) v1

Overview
NameLcy05g019910.1
TypemRNA
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionULP_PROTEASE domain-containing protein
LocationChr05: 43180013 .. 43180325 (+)
Sequence length240
RNA-Seq ExpressionLcy05g019910.1
SyntenyLcy05g019910.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTAGCCAAGCAAAGGGAAGCTTCGTGGCATGGCCTCGCGAACTTGTGATTGTGAATTACCCAAAAAAGGTATGTCTTCTTGGACTTAAATGTGTTTTTTTTCTTTATTTACAATTACATATTTTAATTATGTTTGTGTTAGGTATCTTCTCCCACAAAACCTAAAATAAATGTGTCCATTACACAATCTTCTGAACATACGACTGTCCATGTGACCATCAAGTTGTTGAATCAATATGTCGTTATTTCCATGGAAGAGGATGACACAATTCAAATCAACTTGAGTGGCGCCATATTTTTGAAAGGATAA

mRNA sequence

ATGCTTAGCCAAGCAAAGGGAAGCTTCGTGGCATGGCCTCGCGAACTTGTGATTGTGAATTACCCAAAAAAGGTATCTTCTCCCACAAAACCTAAAATAAATGTGTCCATTACACAATCTTCTGAACATACGACTGTCCATGTGACCATCAAGTTGTTGAATCAATATGTCGTTATTTCCATGGAAGAGGATGACACAATTCAAATCAACTTGAGTGGCGCCATATTTTTGAAAGGATAA

Coding sequence (CDS)

ATGCTTAGCCAAGCAAAGGGAAGCTTCGTGGCATGGCCTCGCGAACTTGTGATTGTGAATTACCCAAAAAAGGTATCTTCTCCCACAAAACCTAAAATAAATGTGTCCATTACACAATCTTCTGAACATACGACTGTCCATGTGACCATCAAGTTGTTGAATCAATATGTCGTTATTTCCATGGAAGAGGATGACACAATTCAAATCAACTTGAGTGGCGCCATATTTTTGAAAGGATAA

Protein sequence

MLSQAKGSFVAWPRELVIVNYPKKVSSPTKPKINVSITQSSEHTTVHVTIKLLNQYVVISMEEDDTIQINLSGAIFLKG
Homology
[Close]
BLAST of Lcy05g019910.1 vs. ExPASy TrEMBL
Match: A0A6J1C2V2 (uncharacterized protein LOC111007859 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111007859 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.9e-11
Identity = 41/77 (53.25%), Postives = 57/77 (74.03%), Query Frame = 0 

Query: 2   LSQAKGSFVAWPRELVIVNYPKKVSSPTKPKINVSITQSSEHTTVHVTIKLLNQYVVISM 61
           L+Q  G FVAWPR LVI++  K +SS    + + + TQ S+HT VHV+IKLLN+YV++SM
Sbjct: 389 LNQTIGGFVAWPRRLVILSEEKNISS---SRTSQTRTQLSKHTDVHVSIKLLNRYVMLSM 448

Query: 62  EEDDTIQINLSGAIFLK 79
           + +DT++INLS  IF K
Sbjct: 449 QHEDTVEINLSKDIFGK 462

[Close]
BLAST of Lcy05g019910.1 vs. ExPASy TrEMBL
Match: A0A6J1C398 (uncharacterized protein LOC111007859 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111007859 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.9e-11
Identity = 41/77 (53.25%), Postives = 57/77 (74.03%), Query Frame = 0 

Query: 2   LSQAKGSFVAWPRELVIVNYPKKVSSPTKPKINVSITQSSEHTTVHVTIKLLNQYVVISM 61
           L+Q  G FVAWPR LVI++  K +SS    + + + TQ S+HT VHV+IKLLN+YV++SM
Sbjct: 389 LNQTIGGFVAWPRRLVILSEEKNISS---SRTSQTRTQLSKHTDVHVSIKLLNRYVMLSM 448

Query: 62  EEDDTIQINLSGAIFLK 79
           + +DT++INLS  IF K
Sbjct: 449 QHEDTVEINLSKDIFGK 462

[Close]
BLAST of Lcy05g019910.1 vs. ExPASy TrEMBL
Match: A0A6J1C2H7 (uncharacterized protein LOC111007859 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007859 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.9e-11
Identity = 41/77 (53.25%), Postives = 57/77 (74.03%), Query Frame = 0 

Query: 2   LSQAKGSFVAWPRELVIVNYPKKVSSPTKPKINVSITQSSEHTTVHVTIKLLNQYVVISM 61
           L+Q  G FVAWPR LVI++  K +SS    + + + TQ S+HT VHV+IKLLN+YV++SM
Sbjct: 389 LNQTIGGFVAWPRRLVILSEEKNISS---SRTSQTRTQLSKHTDVHVSIKLLNRYVMLSM 448

Query: 62  EEDDTIQINLSGAIFLK 79
           + +DT++INLS  IF K
Sbjct: 449 QHEDTVEINLSKDIFGK 462

[Close]
BLAST of Lcy05g019910.1 vs. ExPASy TrEMBL
Match: A0A6J1C4J7 (uncharacterized protein LOC111007859 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007859 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.9e-11
Identity = 41/77 (53.25%), Postives = 57/77 (74.03%), Query Frame = 0 

Query: 2   LSQAKGSFVAWPRELVIVNYPKKVSSPTKPKINVSITQSSEHTTVHVTIKLLNQYVVISM 61
           L+Q  G FVAWPR LVI++  K +SS    + + + TQ S+HT VHV+IKLLN+YV++SM
Sbjct: 388 LNQTIGGFVAWPRRLVILSEEKNISS---SRTSQTRTQLSKHTDVHVSIKLLNRYVMLSM 447

Query: 62  EEDDTIQINLSGAIFLK 79
           + +DT++INLS  IF K
Sbjct: 448 QHEDTVEINLSKDIFGK 461

[Close]
BLAST of Lcy05g019910.1 vs. ExPASy TrEMBL
Match: A0A1S3BRX5 (uncharacterized protein LOC103493028 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493028 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-10
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 0 

Query: 2   LSQAKGSFVAWPRELVIVNYPKKVSSPTKPKINVSITQSSEHTTVHVTIKLLNQYVVISM 61
           L+QA G+FVAWPR+LVIV   KK  S T  +   S TQSS++T VHVTIKLLN+Y + +M
Sbjct: 435 LNQAIGNFVAWPRKLVIVTKEKKAPSLTASE---STTQSSKYTDVHVTIKLLNRYAMQTM 494

Query: 62  EEDDTIQINLSGAIFLK 79
           + +D IQI+LS  IF K
Sbjct: 495 QVEDIIQISLSEHIFGK 508

[Close]
BLAST of Lcy05g019910.1 vs. NCBI nr
Match: XP_038895921.1 (uncharacterized protein LOC120084092 isoform X1 [Benincasa hispida] >XP_038895924.1 uncharacterized protein LOC120084092 isoform X1 [Benincasa hispida] >XP_038895927.1 uncharacterized protein LOC120084092 isoform X1 [Benincasa hispida])

HSP 1 Score: 81.6 bits (200), Expect = 3.2e-12
Identity = 47/77 (61.04%), Postives = 54/77 (70.13%), Query Frame = 0 

Query: 2   LSQAKGSFVAWPRELVIVNYPKKVSSPTKPKINVSITQSSEHTTVHVTIKLLNQYVVISM 61
           L QA G+FVAWPR+LVI    KK  SPT  K   SI QSS++T VHVTIKLLN+Y + SM
Sbjct: 420 LDQAIGNFVAWPRKLVITTKEKKAPSPTTSK---SIAQSSKYTDVHVTIKLLNRYAMHSM 479

Query: 62  EEDDTIQINLSGAIFLK 79
           + DD IQINLS  I  K
Sbjct: 480 QVDDMIQINLSEQILGK 493

[Close]
BLAST of Lcy05g019910.1 vs. NCBI nr
Match: XP_038895930.1 (uncharacterized protein LOC120084092 isoform X2 [Benincasa hispida])

HSP 1 Score: 81.6 bits (200), Expect = 3.2e-12
Identity = 47/77 (61.04%), Postives = 54/77 (70.13%), Query Frame = 0 

Query: 2   LSQAKGSFVAWPRELVIVNYPKKVSSPTKPKINVSITQSSEHTTVHVTIKLLNQYVVISM 61
           L QA G+FVAWPR+LVI    KK  SPT  K   SI QSS++T VHVTIKLLN+Y + SM
Sbjct: 420 LDQAIGNFVAWPRKLVITTKEKKAPSPTTSK---SIAQSSKYTDVHVTIKLLNRYAMHSM 479

Query: 62  EEDDTIQINLSGAIFLK 79
           + DD IQINLS  I  K
Sbjct: 480 QVDDMIQINLSEQILGK 493

[Close]
BLAST of Lcy05g019910.1 vs. NCBI nr
Match: XP_022136080.1 (uncharacterized protein LOC111007859 isoform X4 [Momordica charantia])

HSP 1 Score: 77.0 bits (188), Expect = 8.0e-11
Identity = 41/77 (53.25%), Postives = 57/77 (74.03%), Query Frame = 0 

Query: 2   LSQAKGSFVAWPRELVIVNYPKKVSSPTKPKINVSITQSSEHTTVHVTIKLLNQYVVISM 61
           L+Q  G FVAWPR LVI++  K +SS    + + + TQ S+HT VHV+IKLLN+YV++SM
Sbjct: 389 LNQTIGGFVAWPRRLVILSEEKNISS---SRTSQTRTQLSKHTDVHVSIKLLNRYVMLSM 448

Query: 62  EEDDTIQINLSGAIFLK 79
           + +DT++INLS  IF K
Sbjct: 449 QHEDTVEINLSKDIFGK 462

[Close]
BLAST of Lcy05g019910.1 vs. NCBI nr
Match: XP_022136076.1 (uncharacterized protein LOC111007859 isoform X1 [Momordica charantia])

HSP 1 Score: 77.0 bits (188), Expect = 8.0e-11
Identity = 41/77 (53.25%), Postives = 57/77 (74.03%), Query Frame = 0 

Query: 2   LSQAKGSFVAWPRELVIVNYPKKVSSPTKPKINVSITQSSEHTTVHVTIKLLNQYVVISM 61
           L+Q  G FVAWPR LVI++  K +SS    + + + TQ S+HT VHV+IKLLN+YV++SM
Sbjct: 389 LNQTIGGFVAWPRRLVILSEEKNISS---SRTSQTRTQLSKHTDVHVSIKLLNRYVMLSM 448

Query: 62  EEDDTIQINLSGAIFLK 79
           + +DT++INLS  IF K
Sbjct: 449 QHEDTVEINLSKDIFGK 462

[Close]
BLAST of Lcy05g019910.1 vs. NCBI nr
Match: XP_022136079.1 (uncharacterized protein LOC111007859 isoform X3 [Momordica charantia])

HSP 1 Score: 77.0 bits (188), Expect = 8.0e-11
Identity = 41/77 (53.25%), Postives = 57/77 (74.03%), Query Frame = 0 

Query: 2   LSQAKGSFVAWPRELVIVNYPKKVSSPTKPKINVSITQSSEHTTVHVTIKLLNQYVVISM 61
           L+Q  G FVAWPR LVI++  K +SS    + + + TQ S+HT VHV+IKLLN+YV++SM
Sbjct: 389 LNQTIGGFVAWPRRLVILSEEKNISS---SRTSQTRTQLSKHTDVHVSIKLLNRYVMLSM 448

Query: 62  EEDDTIQINLSGAIFLK 79
           + +DT++INLS  IF K
Sbjct: 449 QHEDTVEINLSKDIFGK 462

The following BLAST results are available for this feature:
BLAST of Lcy05g019910.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy05g019910.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C2V23.9e-1153.25uncharacterized protein LOC111007859 isoform X4 OS=Momordica charantia OX=3673 G... [more]
A0A6J1C3983.9e-1153.25uncharacterized protein LOC111007859 isoform X3 OS=Momordica charantia OX=3673 G... [more]
A0A6J1C2H73.9e-1153.25uncharacterized protein LOC111007859 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1C4J73.9e-1153.25uncharacterized protein LOC111007859 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A1S3BRX51.1e-1057.14uncharacterized protein LOC103493028 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of Lcy05g019910.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038895921.13.2e-1261.04uncharacterized protein LOC120084092 isoform X1 [Benincasa hispida] >XP_03889592... [more]
XP_038895930.13.2e-1261.04uncharacterized protein LOC120084092 isoform X2 [Benincasa hispida][more]
XP_022136080.18.0e-1153.25uncharacterized protein LOC111007859 isoform X4 [Momordica charantia][more]
XP_022136076.18.0e-1153.25uncharacterized protein LOC111007859 isoform X1 [Momordica charantia][more]
XP_022136079.18.0e-1153.25uncharacterized protein LOC111007859 isoform X3 [Momordica charantia][more]
BLAST of Lcy05g019910.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lcy05g019910Lcy05g019910gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy05g019910.1.exon1Lcy05g019910.1.exon1exon
Lcy05g019910.1.exon2Lcy05g019910.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy05g019910.1.cds1Lcy05g019910.1.cds1CDS
Lcy05g019910.1.cds2Lcy05g019910.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lcy05g019910.1Lcy05g019910.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016787 hydrolase activity