Lcy05g013360.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy05g013360.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	Chr05: 15893622 .. 15894236 (+)
Sequence length	615
RNA-Seq Expression	Lcy05g013360.1
Synteny	Lcy05g013360.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTGCGTTGGATCCCCTCTTCAGATGGCGTTTTCTCCCACCAATTCTGCCCGCTACTGCTTGAGAGATCATCCCTCTAATTTTTGGTTAGGACCTATGCTCTTAAATTTATGGAAATCTGATTTGCCAAAGAAGTGCAAAATTTTCATTTGGTCAGTCATCCACAGAAGGCTAAATACAATGGACAGATTACAAAAGAAATTCCAAGGGATGATGCTCAACCCATCCATCTGCTGCCTATGCAAAGGTAACGAGGAATCTTTAGACCACCTTTTAGTTCATTGTAACTGGGCATATGAATTTCGCTCTCGCCTTTACCAAGCTATTGGAATTCAATCGTCGGCCCCTCACCATGTCGAATATCTTTGCTTCGAAGCTTTTGCCACTTCGTCTCGCTCTCAAAAGGACGTGCTTAGAATCAACATTTTTGTACCGACCCTCTGGAACCTGTGGAAAGAGCGAAACAATCGGGTTTTTCAGAACAAGTCCCGTAACCTTGTGCAACTCTGGGAAGATTCTCTATCGCTTGCGGCTTTTTGGCCTACCAAGTCTAAATTTTACATGAATTATGATTCGGCATCCATTGCTCTTAATTGGAAGGCTTTTTTGTAA

mRNA sequence

ATGCTTTGCGTTGGATCCCCTCTTCAGATGGCGTTTTCTCCCACCAATTCTGCCCGCTACTGCTTGAGAGATCATCCCTCTAATTTTTGGTTAGGACCTATGCTCTTAAATTTATGGAAATCTGATTTGCCAAAGAAGTGCAAAATTTTCATTTGGTCAGTCATCCACAGAAGGCTAAATACAATGGACAGATTACAAAAGAAATTCCAAGGGATGATGCTCAACCCATCCATCTGCTGCCTATGCAAAGGTAACGAGGAATCTTTAGACCACCTTTTAGTTCATTGTAACTGGGCATATGAATTTCGCTCTCGCCTTTACCAAGCTATTGGAATTCAATCGTCGGCCCCTCACCATGTCGAATATCTTTGCTTCGAAGCTTTTGCCACTTCGTCTCGCTCTCAAAAGGACGTGCTTAGAATCAACATTTTTGTACCGACCCTCTGGAACCTGTGGAAAGAGCGAAACAATCGGGTTTTTCAGAACAAGTCCCGTAACCTTGTGCAACTCTGGGAAGATTCTCTATCGCTTGCGGCTTTTTGGCCTACCAAGTCTAAATTTTACATGAATTATGATTCGGCATCCATTGCTCTTAATTGGAAGGCTTTTTTGTAA

Coding sequence (CDS)

ATGCTTTGCGTTGGATCCCCTCTTCAGATGGCGTTTTCTCCCACCAATTCTGCCCGCTACTGCTTGAGAGATCATCCCTCTAATTTTTGGTTAGGACCTATGCTCTTAAATTTATGGAAATCTGATTTGCCAAAGAAGTGCAAAATTTTCATTTGGTCAGTCATCCACAGAAGGCTAAATACAATGGACAGATTACAAAAGAAATTCCAAGGGATGATGCTCAACCCATCCATCTGCTGCCTATGCAAAGGTAACGAGGAATCTTTAGACCACCTTTTAGTTCATTGTAACTGGGCATATGAATTTCGCTCTCGCCTTTACCAAGCTATTGGAATTCAATCGTCGGCCCCTCACCATGTCGAATATCTTTGCTTCGAAGCTTTTGCCACTTCGTCTCGCTCTCAAAAGGACGTGCTTAGAATCAACATTTTTGTACCGACCCTCTGGAACCTGTGGAAAGAGCGAAACAATCGGGTTTTTCAGAACAAGTCCCGTAACCTTGTGCAACTCTGGGAAGATTCTCTATCGCTTGCGGCTTTTTGGCCTACCAAGTCTAAATTTTACATGAATTATGATTCGGCATCCATTGCTCTTAATTGGAAGGCTTTTTTGTAA

Protein sequence

MLCVGSPLQMAFSPTNSARYCLRDHPSNFWLGPMLLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAIGIQSSAPHHVEYLCFEAFATSSRSQKDVLRINIFVPTLWNLWKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYDSASIALNWKAFL

Homology

[Close]

BLAST of Lcy05g013360.1 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.9e-33
Identity = 75/192 (39.06%), Postives = 110/192 (57.29%), Query Frame = 0


Query: 13   SPTNSARYCLRDHPSNFWLGPMLLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGM 72
            SPTN        HPS      +   LWK D PKKCK FIW++IH  +NT DRLQK+    
Sbjct: 859  SPTNF-------HPS------LYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNW 918

Query: 73   MLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAIGIQSSAPHHVEYLCFEAFATSS 132
             L+P+ C +C  ++E ++HL +HC ++ +  S+  QA+   +S P+ V+ L     + + 
Sbjct: 919  TLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKA-QALLKWNSTPNDVKSLAQNICSLNI 978

Query: 133  RSQKDVLRINIFVPTLWNLWKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYD 192
            ++QK ++  N     LW +W ERNNR+F+ + +    LWED L+    W  KSK + NYD
Sbjct: 979  KTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQTGLWSCKSKLFSNYD 1036

Query: 193  SASIALNWKAFL 205
              SIALN  AF+
Sbjct: 1039 CCSIALNISAFV 1036

[Close]

BLAST of Lcy05g013360.1 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.9e-33
Identity = 75/192 (39.06%), Postives = 110/192 (57.29%), Query Frame = 0


Query: 13  SPTNSARYCLRDHPSNFWLGPMLLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGM 72
           SPTN        HPS      +   LWK D PKKCK FIW++IH  +NT DRLQK+    
Sbjct: 765 SPTNF-------HPS------LYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNW 824

Query: 73  MLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAIGIQSSAPHHVEYLCFEAFATSS 132
            L+P+ C +C  ++E ++HL +HC ++ +  S+  QA+   +S P+ V+ L     + + 
Sbjct: 825 TLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKA-QALLKWNSTPNDVKSLAQNICSLNI 884

Query: 133 RSQKDVLRINIFVPTLWNLWKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYD 192
           ++QK ++  N     LW +W ERNNR+F+ + +    LWED L+    W  KSK + NYD
Sbjct: 885 KTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQTGLWSCKSKLFSNYD 942

Query: 193 SASIALNWKAFL 205
             SIALN  AF+
Sbjct: 945 CCSIALNISAFV 942

[Close]

BLAST of Lcy05g013360.1 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 7.9e-32
Identity = 70/179 (39.11%), Postives = 107/179 (59.78%), Query Frame = 0


Query: 26   PSNFWLGPMLLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGN 85
            P+NF    +   LWK + PKKCK FIW++IH  +NT DRLQK+     L+P+ C +C  +
Sbjct: 968  PANFHPN-LYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKS 1027

Query: 86   EESLDHLLVHCNWAYEFRSRLYQAIGIQSSAPHHVEYLCFEAFATSSRSQKDVLRINIFV 145
            +E ++HL +HC ++ +  S+  +A+   +S P  V+ L     + + R+QK ++  N   
Sbjct: 1028 QEDINHLFIHCPYSQQLWSKA-KALLNWNSTPTDVQSLIQNICSLNIRNQKGLITFNTNA 1087

Query: 146  PTLWNLWKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYDSASIALNWKAFL 205
              LW +W ERNNR+F+ + +    LWED+L+    W  KSK + NYD  SIALN  AF+
Sbjct: 1088 TILWKIWLERNNRIFKQQEKAPQDLWEDTLAQIGLWSCKSKLFSNYDCCSIALNISAFV 1144

[Close]

BLAST of Lcy05g013360.1 vs. ExPASy TrEMBL
Match: A0A5A7UTI6 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005580 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.0e-31
Identity = 66/168 (39.29%), Postives = 101/168 (60.12%), Query Frame = 0


Query: 35  LLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLV 94
           L +LW+S +P+KCK FIW+++H++LNTMD++QK+   M LNPS C  C+ + E ++HL +
Sbjct: 604 LKHLWRSHIPQKCKFFIWTMVHQKLNTMDKIQKRNPSMSLNPSWCISCRSSNEDMNHLFI 663

Query: 95  HCNWAYEFRSRLYQAIGIQSSAPHHVEYLCFEAFATSSRSQKDVLRINIFVPTLWNLWKE 154
            C +A    +      G    A  +V+ LC +    S R+ K+++  N  + TLW +W  
Sbjct: 664 FCPFARNLWNMWSSETG-TPMATTNVKDLCLQLCRQSDRNTKNIISFNSAIATLWTIWIR 723

Query: 155 RNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYDSASIALNWKA 203
           RNN +F +K  + +  WED  +L   W +KSK   NY  A+IALN KA
Sbjct: 724 RNNLIFADKDSSYLNAWEDICTLTGSWSSKSKTLKNYSQATIALNIKA 770

[Close]

BLAST of Lcy05g013360.1 vs. ExPASy TrEMBL
Match: A0A5A7US62 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003960 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 2.5e-30
Identity = 65/171 (38.01%), Postives = 101/171 (59.06%), Query Frame = 0


Query: 35   LLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLV 94
            L +LW+S +P+KCK FIW+++H++LNTMD +QK+   M LNPS C  C+ + E ++HL +
Sbjct: 1657 LKHLWRSHIPQKCKFFIWTMVHQKLNTMDNIQKRNPSMSLNPSWCISCRSSNEDMNHLFI 1716

Query: 95   HCNWAYEFRSRLYQAIGIQSSAP---HHVEYLCFEAFATSSRSQKDVLRINIFVPTLWNL 154
             C     F   L+     ++  P    +V+ LC +    + R+ K+++  N  + TLW +
Sbjct: 1717 FC----PFARSLWNMWSSETGTPMVNTNVKDLCLQLCRQTGRNAKNIISFNSAIATLWTI 1776

Query: 155  WKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYDSASIALNWKA 203
            W  RNN +F +K  + +  WED  +L   W +KSK   NY  A+IALN KA
Sbjct: 1777 WIRRNNLIFADKDSSYLNAWEDICTLTGSWSSKSKTLKNYSQATIALNIKA 1823

[Close]

BLAST of Lcy05g013360.1 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 152.5 bits (384), Expect = 3.9e-33
Identity = 75/192 (39.06%), Postives = 110/192 (57.29%), Query Frame = 0


Query: 13  SPTNSARYCLRDHPSNFWLGPMLLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGM 72
           SPTN        HPS      +   LWK D PKKCK FIW++IH  +NT DRLQK+    
Sbjct: 765 SPTNF-------HPS------LYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNW 824

Query: 73  MLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAIGIQSSAPHHVEYLCFEAFATSS 132
            L+P+ C +C  ++E ++HL +HC ++ +  S+  QA+   +S P+ V+ L     + + 
Sbjct: 825 TLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKA-QALLKWNSTPNDVKSLAQNICSLNI 884

Query: 133 RSQKDVLRINIFVPTLWNLWKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYD 192
           ++QK ++  N     LW +W ERNNR+F+ + +    LWED L+    W  KSK + NYD
Sbjct: 885 KTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQTGLWSCKSKLFSNYD 942

Query: 193 SASIALNWKAFL 205
             SIALN  AF+
Sbjct: 945 CCSIALNISAFV 942

[Close]

BLAST of Lcy05g013360.1 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 152.5 bits (384), Expect = 3.9e-33
Identity = 75/192 (39.06%), Postives = 110/192 (57.29%), Query Frame = 0


Query: 13   SPTNSARYCLRDHPSNFWLGPMLLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGM 72
            SPTN        HPS      +   LWK D PKKCK FIW++IH  +NT DRLQK+    
Sbjct: 859  SPTNF-------HPS------LYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNW 918

Query: 73   MLNPSICCLCKGNEESLDHLLVHCNWAYEFRSRLYQAIGIQSSAPHHVEYLCFEAFATSS 132
             L+P+ C +C  ++E ++HL +HC ++ +  S+  QA+   +S P+ V+ L     + + 
Sbjct: 919  TLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKA-QALLKWNSTPNDVKSLAQNICSLNI 978

Query: 133  RSQKDVLRINIFVPTLWNLWKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYD 192
            ++QK ++  N     LW +W ERNNR+F+ + +    LWED L+    W  KSK + NYD
Sbjct: 979  KTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQTGLWSCKSKLFSNYD 1036

Query: 193  SASIALNWKAFL 205
              SIALN  AF+
Sbjct: 1039 CCSIALNISAFV 1036

[Close]

BLAST of Lcy05g013360.1 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 1.6e-31
Identity = 70/179 (39.11%), Postives = 107/179 (59.78%), Query Frame = 0


Query: 26   PSNFWLGPMLLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGN 85
            P+NF    +   LWK + PKKCK FIW++IH  +NT DRLQK+     L+P+ C +C  +
Sbjct: 968  PANFHPN-LYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKS 1027

Query: 86   EESLDHLLVHCNWAYEFRSRLYQAIGIQSSAPHHVEYLCFEAFATSSRSQKDVLRINIFV 145
            +E ++HL +HC ++ +  S+  +A+   +S P  V+ L     + + R+QK ++  N   
Sbjct: 1028 QEDINHLFIHCPYSQQLWSKA-KALLNWNSTPTDVQSLIQNICSLNIRNQKGLITFNTNA 1087

Query: 146  PTLWNLWKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYDSASIALNWKAFL 205
              LW +W ERNNR+F+ + +    LWED+L+    W  KSK + NYD  SIALN  AF+
Sbjct: 1088 TILWKIWLERNNRIFKQQEKAPQDLWEDTLAQIGLWSCKSKLFSNYDCCSIALNISAFV 1144

[Close]

BLAST of Lcy05g013360.1 vs. NCBI nr
Match: KAA0056839.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ99342.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 6.2e-31
Identity = 66/168 (39.29%), Postives = 101/168 (60.12%), Query Frame = 0


Query: 35  LLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLV 94
           L +LW+S +P+KCK FIW+++H++LNTMD++QK+   M LNPS C  C+ + E ++HL +
Sbjct: 604 LKHLWRSHIPQKCKFFIWTMVHQKLNTMDKIQKRNPSMSLNPSWCISCRSSNEDMNHLFI 663

Query: 95  HCNWAYEFRSRLYQAIGIQSSAPHHVEYLCFEAFATSSRSQKDVLRINIFVPTLWNLWKE 154
            C +A    +      G    A  +V+ LC +    S R+ K+++  N  + TLW +W  
Sbjct: 664 FCPFARNLWNMWSSETG-TPMATTNVKDLCLQLCRQSDRNTKNIISFNSAIATLWTIWIR 723

Query: 155 RNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYDSASIALNWKA 203
           RNN +F +K  + +  WED  +L   W +KSK   NY  A+IALN KA
Sbjct: 724 RNNLIFADKDSSYLNAWEDICTLTGSWSSKSKTLKNYSQATIALNIKA 770

[Close]

BLAST of Lcy05g013360.1 vs. NCBI nr
Match: TYK08190.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 142.1 bits (357), Expect = 5.2e-30
Identity = 65/171 (38.01%), Postives = 101/171 (59.06%), Query Frame = 0


Query: 35   LLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLV 94
            L +LW+S +P+KCK FIW+++H++LNTMD +QK+   M LNPS C  C+ + E ++HL +
Sbjct: 1657 LKHLWRSHIPQKCKFFIWTMVHQKLNTMDNIQKRNPSMSLNPSWCISCRSSNEDMNHLFI 1716

Query: 95   HCNWAYEFRSRLYQAIGIQSSAP---HHVEYLCFEAFATSSRSQKDVLRINIFVPTLWNL 154
             C     F   L+     ++  P    +V+ LC +    + R+ K+++  N  + TLW +
Sbjct: 1717 FC----PFARSLWNMWSSETGTPMVNTNVKDLCLQLCRQTGRNAKNIISFNSAIATLWTI 1776

Query: 155  WKERNNRVFQNKSRNLVQLWEDSLSLAAFWPTKSKFYMNYDSASIALNWKA 203
            W  RNN +F +K  + +  WED  +L   W +KSK   NY  A+IALN KA
Sbjct: 1777 WIRRNNLIFADKDSSYLNAWEDICTLTGSWSSKSKTLKNYSQATIALNIKA 1823

[Close]

BLAST of Lcy05g013360.1 vs. TAIR 10
Match: AT3G25270.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-09
Identity = 45/154 (29.22%), Postives = 66/154 (42.86%), Query Frame = 0


Query: 38  LWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICCLCKGNEESLDHLLVHCN 97
           +WK     K K F+W ++   L T D L+++    + N   C  C   +E+  HL   C 
Sbjct: 18  IWKLKTAPKIKHFLWKLLSGALATGDNLKRRH---IRNHPQCHRCCQEDETSQHLFFDCF 77

Query: 98  WAYEFRSRLYQAIGIQSSAPHH-------VEYLCFEAFATSSRSQKDVLRINIFVPTLWN 157
           +A     ++++A GI    PH              E   +S  + +     N+ +  LW 
Sbjct: 78  YA----QQVWRASGI----PHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWR 137

Query: 158 LWKERNNRVFQNKS----------RNLVQLWEDS 175
           LWK RN  VFQ KS          RN VQ WED+
Sbjct: 138 LWKSRNQLVFQQKSISWQNTLQRARNDVQEWEDT 160

[Close]

BLAST of Lcy05g013360.1 vs. TAIR 10
Match: AT3G25720.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 41.6 bits (96), Expect = 8.9e-04
Identity = 36/138 (26.09%), Postives = 63/138 (45.65%), Query Frame = 0


Query: 27  SNFW------LGPMLLNLWKSDLPKKCKIFIWSVIHRRLNTMDRLQKKFQGMMLNPSICC 86
           + FW       GP+L+++  +  P + +I I        +  D  Q    G+ ++P +CC
Sbjct: 112 ARFWTDNWTPFGPLLIHIGAA-RPNRLRIPI------EASVADATQGISWGLPVSP-LCC 171

Query: 87  LCKGNEESLDHLLVHCNWAYEFRSRLYQAIGIQSSA-PHHVEYLCFEAFATSSRSQKDVL 146
           LC    E+ DHLL+ C+++    S +   + + S    +  E L +     SS S    L
Sbjct: 172 LCSCAPETRDHLLLGCSFSKALWSSVQSRLRLHSLIFLNWAELLLW--IRRSSTSAPSTL 231

Query: 147 RINIFVPTLWNLWKERNN 158
           R  +    ++  WK+RNN
Sbjct: 232 RKLVAHSVVYATWKQRNN 239

The following BLAST results are available for this feature:

BLAST of Lcy05g013360.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy05g013360.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TIB8	1.9e-33	39.06	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TR15	1.9e-33	39.06	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7T9I7	7.9e-32	39.11	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7UTI6	3.0e-31	39.29	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7US62	2.5e-30	38.01	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Lcy05g013360.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044556.1	3.9e-33	39.06	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0041397.1	3.9e-33	39.06	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0039950.1	1.6e-31	39.11	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245...	[more]
KAA0056839.1	6.2e-31	39.29	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ993...	[more]
TYK08190.1	5.2e-30	38.01	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of Lcy05g013360.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25270.1	2.4e-09	29.22	Ribonuclease H-like superfamily protein	[more]
AT3G25720.1	8.9e-04	26.09	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 37..101 e-value: 1.1E-14 score: 54.9
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 37..142
None	No IPR available	PANTHER	PTHR33116:SF38	OS01G0158850 PROTEIN	coord: 37..142

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy05g013360	Lcy05g013360	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy05g013360.1.exon1	Lcy05g013360.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy05g013360.1.cds1	Lcy05g013360.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy05g013360.1	Lcy05g013360.1-protein	polypeptide