Lcy04g008250.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy04g008250.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Non-specific lipid-transfer protein
Location	Chr04: 39038634 .. 39040421 (-)
Sequence length	1011
RNA-Seq Expression	Lcy04g008250.1
Synteny	Lcy04g008250.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAAACTCTTCTACTACATCTCCAAATCAATAAACTCTCGTACTTCTGTAGTACCTACTCCTAAATACAATGACCGTCATGACGAGCAACTCAATGAACATTAAGTTGAGTTTGGTCGTAGCATTTCTCTGTGTCGTGATTGGTGGAAGGGCGATCGAGGTGGCCATATCGTGCAACCAGGTGATGAGCAACTTGGCCCCGTGCGTGTCGTACGTGACAAGCGGAGGATCCCCGTCGTCGACCTGTTGCTACGGCGTGAAGAACTTGAACGCGATGGCTCAGACGACGAACGACCGGCAGCAAGTGTGTCGATGCTTGGAGTCGCTGATCAAGGGAGTTTCCTACAATGCCCAAAACATTGCTAATGCTGGGGCTCTTCCGACCAAGTGTGGCGTCAACCTTCCCTACAACATCAGCCCCAACGTTAACTGTAACACGTAATAATGCCCTTTCAAATCATTTCATTTCTTTCTTTGTTTTTCAACTTTTAATATTTTTTATTTTAGTTAGCGGTTTCGATATATATGTCCAAATGTCGACAACTAGGAGAGATTAAAAAAAAAGTCTCATTTTCTACCTTTGTCTCTTAGTTGTTGGATTTTAATGGAGTGTGTAGAGACATCTAAGTATTGTTCGTGGTTAAAGACAATACGTAGCTATATGTCACCTAATTTTAAATAACAATACTTGGCTCCTTACACGACCATGAAAAAAATCTTGACAAGTGAGAGAGACAAAGGAAGAAAATGATCAGAATTTTTTTTTAATCTCTCCTAGCTAGTTGTCGACATTTTAGTGTGGTAGTATGTTCCGGTACCTGGGAAAATTTCTAGTACTACGATAGTATGGAAAATTTTTCATACTACCTCCATTCATTGTTTGCCATGTGAGGAGTATTTAAGAATGATGTGGGACCCATAGAATAAAATATTATATCATTAAATACTCATTAAATGCTGTGTCAAATGCTGAATGGAGAGAGTAGGTATTACCGTAGTACTAGAAATTTTCCCGAAGGTACCTTTACATCATTACGTAACTAAGTATTATCCTATTATTATAATTGAGAATTAAATGGTAATTTTTTCCTAGTGGAAAAGGATTAAAATGAAAATTTGAACTTTTAAAGGATTTATAACTTTTGAAAAGTTTGAATCTCTAGTACTTTGAACTAAAAGAAGGTTCTAATTACTTTGTCAATTATTGTTTTGCAGCATTAAGATGTGAGGAAAGTCCAGCAGCAAGCCTACAAAACGTCGTCGTATTGTGGGAGAATAAATGGAAGAAGAGTATTTAGTATTTGTGAACGAATATCATTTCTATTTTGTCATGTTATCCACTTTGAAATCCCTTTTGTATTTGGGGTTTAGCCTTTAGGGTTATAATCCAAAAAAGAAATATATATTAGCGTTTATTTAGAATGGTGTGAAATTTATATCTTGTTCGAGAAGTACTAAGTTTTTTAAACTTTTCTCAACAATAATGTTTCGGTGGATCCACAGAGACAAAATGAAGAAAGGAGGAGACGTTATCCCCTCTCTACTCGTTTTAGGTTGAAATTTTATATTAAAAAGTTGAGATTTTTAAGTTTTCTCTCTATTTTGTTCTTCGTCTCCCTACATTTTCAAAATTAAAAGATAATATATACACAAAGTTGGAAGGTGAAGTTTTGCTCCTCATGAAATTTGTGTAATAGGATGATAAGACAACTTATATATAGCATATATATGAGTTTGCCTTTTAATTTCCAATCGCAATTCCTATAATATTGGGTTTGATATACAAAC

mRNA sequence

CTCAAACTCTTCTACTACATCTCCAAATCAATAAACTCTCGTACTTCTGTAGTACCTACTCCTAAATACAATGACCGTCATGACGAGCAACTCAATGAACATTAAGTTGAGTTTGGTCGTAGCATTTCTCTGTGTCGTGATTGGTGGAAGGGCGATCGAGGTGGCCATATCGTGCAACCAGGTGATGAGCAACTTGGCCCCGTGCGTGTCGTACGTGACAAGCGGAGGATCCCCGTCGTCGACCTGTTGCTACGGCGTGAAGAACTTGAACGCGATGGCTCAGACGACGAACGACCGGCAGCAAGTGTGTCGATGCTTGGAGTCGCTGATCAAGGGAGTTTCCTACAATGCCCAAAACATTGCTAATGCTGGGGCTCTTCCGACCAAGTGTGGCGTCAACCTTCCCTACAACATCAGCCCCAACGTTAACTGTAACACCATTAAGATGTGAGGAAAGTCCAGCAGCAAGCCTACAAAACGTCGTCGTATTGTGGGAGAATAAATGGAAGAAGAGTATTTAGTATTTGTGAACGAATATCATTTCTATTTTGTCATGTTATCCACTTTGAAATCCCTTTTGTATTTGGGGTTTAGCCTTTAGGGTTATAATCCAAAAAAGAAATATATATTAGCGTTTATTTAGAATGGTGTGAAATTTATATCTTGTTCGAGAAGTACTAAGTTTTTTAAACTTTTCTCAACAATAATGTTTCGGTGGATCCACAGAGACAAAATGAAGAAAGGAGGAGACGTTATCCCCTCTCTACTCGTTTTAGGTTGAAATTTTATATTAAAAAGTTGAGATTTTTAAGTTTTCTCTCTATTTTGTTCTTCGTCTCCCTACATTTTCAAAATTAAAAGATAATATATACACAAAGTTGGAAGGTGAAGTTTTGCTCCTCATGAAATTTGTGTAATAGGATGATAAGACAACTTATATATAGCATATATATGAGTTTGCCTTTTAATTTCCAATCGCAATTCCTATAATATTGGGTTTGATATACAAAC

Coding sequence (CDS)

ATGACCGTCATGACGAGCAACTCAATGAACATTAAGTTGAGTTTGGTCGTAGCATTTCTCTGTGTCGTGATTGGTGGAAGGGCGATCGAGGTGGCCATATCGTGCAACCAGGTGATGAGCAACTTGGCCCCGTGCGTGTCGTACGTGACAAGCGGAGGATCCCCGTCGTCGACCTGTTGCTACGGCGTGAAGAACTTGAACGCGATGGCTCAGACGACGAACGACCGGCAGCAAGTGTGTCGATGCTTGGAGTCGCTGATCAAGGGAGTTTCCTACAATGCCCAAAACATTGCTAATGCTGGGGCTCTTCCGACCAAGTGTGGCGTCAACCTTCCCTACAACATCAGCCCCAACGTTAACTGTAACACCATTAAGATGTGA

Protein sequence

MTVMTSNSMNIKLSLVVAFLCVVIGGRAIEVAISCNQVMSNLAPCVSYVTSGGSPSSTCCYGVKNLNAMAQTTNDRQQVCRCLESLIKGVSYNAQNIANAGALPTKCGVNLPYNISPNVNCNTIKM

Homology

[Close]

BLAST of Lcy04g008250.1 vs. ExPASy Swiss-Prot
Match: Q43019 (Non-specific lipid-transfer protein 3 OS=Prunus dulcis OX=3755 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 4.5e-27
Identity = 56/123 (45.53%), Postives = 83/123 (67.48%), Query Frame = 0


Query: 4   MTSNSMNIKLSLVVAFL-CVVIGGRAIEVAISCNQVMSNLAPCVSYVTSGGSPSSTCCYG 63
           M S+   +KL  +VA + C+ +GG     A+SC QV++NL PC++YV +GG+ + +CC G
Sbjct: 1   MASSGQLLKLVCLVAVMCCMAVGGPKAMAAVSCGQVVNNLTPCINYVANGGALNPSCCTG 60

Query: 64  VKNLNAMAQTTNDRQQVCRCLESLIKGVSYNAQNIANAGALPTKCGVNLPYNISPNVNCN 123
           V++L ++AQTT DRQ +C CL+  + G+ Y   N   A  LP KCGVN+PY ISP+ +C 
Sbjct: 61  VRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCK 120

Query: 124 TIK 126
           +IK
Sbjct: 121 SIK 123

[Close]

BLAST of Lcy04g008250.1 vs. ExPASy Swiss-Prot
Match: Q9M5X8 (Non-specific lipid-transfer protein OS=Prunus avium OX=42229 PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.1e-24
Identity = 60/114 (52.63%), Postives = 77/114 (67.54%), Query Frame = 0


Query: 12  KLSLVVAFLCVVIGGRAIEVAISCNQVMSNLAPCVSYVTSGGSPSSTCCYGVKNLNAMAQ 71
           KL+LVVA LC+V+    I  A++C QV SNLAPC++YV  GG+    CC G++N+N +A+
Sbjct: 8   KLALVVA-LCMVV-SVPIAQALTCGQVSSNLAPCIAYVRGGGAVPPACCNGIRNINNLAK 67

Query: 72  TTNDRQQVCRCLESLIKGVSYNAQNIANAGALPTKCGVNLPYNISPNVNCNTIK 126
           TT DRQ  C CL+ L    S    N  NA ALP KCGVN+PY ISP+ NC T+K
Sbjct: 68  TTADRQTACNCLKQL--SASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117

[Close]

BLAST of Lcy04g008250.1 vs. ExPASy Swiss-Prot
Match: Q9M5X6 (Non-specific lipid-transfer protein OS=Pyrus communis OX=23211 PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 6.1e-24
Identity = 60/120 (50.00%), Postives = 83/120 (69.17%), Query Frame = 0


Query: 6   SNSMNIKLSLVVAFLCVVIGGRAIEVAISCNQVMSNLAPCVSYVTSGGSPSSTCCYGVKN 65
           ++S  IKL+LVVA LC+ +   ++  AI+C+QV +NLAPC++YV SGG+    CC G+K 
Sbjct: 2   ASSAVIKLALVVA-LCMAV---SVAHAITCSQVSANLAPCINYVRSGGAVPPACCNGIKT 61

Query: 66  LNAMAQTTNDRQQVCRCLESLIKGVSYNAQNIANAGALPTKCGVNLPYNISPNVNCNTIK 125
           +N +A+TT DRQ  C CL++L   VS    N  NA +LP KCGVN+PY IS + NC T+K
Sbjct: 62  INGLAKTTPDRQAACNCLKNLAGSVS--GVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115

[Close]

BLAST of Lcy04g008250.1 vs. ExPASy Swiss-Prot
Match: A0AT29 (Non-specific lipid-transfer protein 2 OS=Lens culinaris OX=3864 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-23
Identity = 58/115 (50.43%), Postives = 73/115 (63.48%), Query Frame = 0


Query: 11  IKLSLVVAFLCVVIGGRAIEVAISCNQVMSNLAPCVSYVTSGGSPSSTCCYGVKNLNAMA 70
           +KL+ VV  +C+V+     E AISC  V S+L+PC++Y+T G  PS  CC GVK L A A
Sbjct: 5   MKLACVVLVICMVVIAPMAEGAISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAA 64

Query: 71  QTTNDRQQVCRCLESLIKGVSYNAQNIANAGALPTKCGVNLPYNISPNVNCNTIK 126
            TT DRQ  C CL+S    ++    N  NA ALP KCGVN+PY IS   NCNT+K
Sbjct: 65  NTTPDRQAACNCLKSAAGSIT--KLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117

[Close]

BLAST of Lcy04g008250.1 vs. ExPASy Swiss-Prot
Match: Q43017 (Non-specific lipid-transfer protein 1 OS=Prunus dulcis OX=3755 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-23
Identity = 60/114 (52.63%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 12  KLSLVVAFLCVVIGGRAIEVAISCNQVMSNLAPCVSYVTSGGSPSSTCCYGVKNLNAMAQ 71
           KL+LVVA LC+V+    I  AI+C QV SNLAPC+ YV  GG+    CC G++N+N +A+
Sbjct: 8   KLALVVA-LCMVV-SVPIAQAITCGQVSSNLAPCIPYVRGGGAVPPACCNGIRNVNNLAR 67

Query: 72  TTNDRQQVCRCLESLIKGVSYNAQNIANAGALPTKCGVNLPYNISPNVNCNTIK 126
           TT DRQ  C CL+ L    S    N  NA ALP KCGVN+PY ISP+ NC  +K
Sbjct: 68  TTPDRQAACNCLKQL--SASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117

[Close]

BLAST of Lcy04g008250.1 vs. ExPASy TrEMBL
Match: A0A0A0KY77 (Non-specific lipid-transfer protein OS=Cucumis sativus OX=3659 GN=Csa_4G333620 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.1e-36
Identity = 83/125 (66.40%), Postives = 95/125 (76.00%), Query Frame = 0


Query: 4   MTSNSMNI-KLSLVVAFLCVVIGGR-AIEVAISCNQVMSNLAPCVSYVTSGGSPSSTCCY 63
           M SN + I KL L V FL  VIGG    E  +SCNQV++NL PCVSYVT GG PSS CC 
Sbjct: 1   MASNLITILKLGLTVTFLYAVIGGGVTTEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCS 60

Query: 64  GVKNLNAMAQTTNDRQQVCRCLESLIKGVSYNAQNIANAGALPTKCGVNLPYNISPNVNC 123
           GVK L+  A+TT DRQ VCRCL+SL+ GV YN QN+ANA ALPTKCGV LPY+I+PNV+C
Sbjct: 61  GVKQLSTAARTTPDRQAVCRCLKSLVNGVKYNGQNVANAAALPTKCGVTLPYSINPNVDC 120

Query: 124 NTIKM 127
           NTIKM
Sbjct: 121 NTIKM 125

[Close]

BLAST of Lcy04g008250.1 vs. ExPASy TrEMBL
Match: A0A1S3CIS8 (Non-specific lipid-transfer protein OS=Cucumis melo OX=3656 GN=LOC103501462 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.5e-36
Identity = 82/125 (65.60%), Postives = 95/125 (76.00%), Query Frame = 0


Query: 4   MTSNSMNI-KLSLVVAFLCVVIGGR-AIEVAISCNQVMSNLAPCVSYVTSGGSPSSTCCY 63
           M SN + I KL L V  L  VIGG    E  ++CNQV+SNL+PC+SYVT GGSPS  CC 
Sbjct: 1   MASNLITILKLGLTVTLLYAVIGGGVTTEATVTCNQVVSNLSPCISYVTGGGSPSFNCCS 60

Query: 64  GVKNLNAMAQTTNDRQQVCRCLESLIKGVSYNAQNIANAGALPTKCGVNLPYNISPNVNC 123
           GV+ LN  AQTT DRQ VCRCL+SLI GV+YN QN+ANA ALPTKCGVNLPY I+PN +C
Sbjct: 61  GVRQLNKAAQTTPDRQDVCRCLKSLINGVTYNGQNVANAAALPTKCGVNLPYTINPNADC 120

Query: 124 NTIKM 127
           +TIKM
Sbjct: 121 STIKM 125

[Close]

BLAST of Lcy04g008250.1 vs. ExPASy TrEMBL
Match: A0A6J1HTX7 (Non-specific lipid-transfer protein OS=Cucurbita maxima OX=3661 GN=LOC111466126 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.6e-35
Identity = 73/122 (59.84%), Postives = 97/122 (79.51%), Query Frame = 0


Query: 5   TSNSMNIKLSLVVAFLC-VVIGGRAIEVAISCNQVMSNLAPCVSYVTSGGSPSSTCCYGV 64
           +S  +N+K+ LVVA +C +++GGR  E A++CNQV+S+L  CVSYVT GG+PS+TCC GV
Sbjct: 3   SSGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSDLGACVSYVTGGGAPSATCCSGV 62

Query: 65  KNLNAMAQTTNDRQQVCRCLESLIKGVSYNAQNIANAGALPTKCGVNLPYNISPNVNCNT 124
           ++LN +A T  DRQ VC CLESL+KGVSYNAQ +ANA ALP +CGV LPY I P ++C+T
Sbjct: 63  QDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPARCGVKLPYKIDPRIDCST 122

Query: 125 IK 126
           I+
Sbjct: 123 IR 124

[Close]

BLAST of Lcy04g008250.1 vs. ExPASy TrEMBL
Match: A0A6J1EBM4 (Non-specific lipid-transfer protein OS=Cucurbita moschata OX=3662 GN=LOC111432531 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.6e-35
Identity = 74/122 (60.66%), Postives = 96/122 (78.69%), Query Frame = 0


Query: 5   TSNSMNIKLSLVVAFLC-VVIGGRAIEVAISCNQVMSNLAPCVSYVTSGGSPSSTCCYGV 64
           +S  +N+K+ LVVA +C +++GGR  E A++CNQV+S+L  CVSYVT GG+PS+TCC GV
Sbjct: 3   SSGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSDLGACVSYVTGGGTPSATCCSGV 62

Query: 65  KNLNAMAQTTNDRQQVCRCLESLIKGVSYNAQNIANAGALPTKCGVNLPYNISPNVNCNT 124
           ++LN +A T  DRQ VC CLESL+KGVSYNAQ +ANA ALP KCGV LPY I P  +C+T
Sbjct: 63  QDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPAKCGVKLPYKIDPRTDCST 122

Query: 125 IK 126
           I+
Sbjct: 123 IR 124

[Close]

BLAST of Lcy04g008250.1 vs. ExPASy TrEMBL
Match: A0A5D3CEZ6 (Non-specific lipid-transfer protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00580 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 8.0e-35
Identity = 79/122 (64.75%), Postives = 92/122 (75.41%), Query Frame = 0


Query: 4   MTSNSMNI-KLSLVVAFLCVVIGGR-AIEVAISCNQVMSNLAPCVSYVTSGGSPSSTCCY 63
           M SN + I KL L V  L  VIGG    E  ++CNQV+SNL+PC+SYVT GGSPS  CC 
Sbjct: 1   MASNLITILKLGLTVTLLYAVIGGGVTTEATVTCNQVVSNLSPCISYVTGGGSPSFNCCS 60

Query: 64  GVKNLNAMAQTTNDRQQVCRCLESLIKGVSYNAQNIANAGALPTKCGVNLPYNISPNVNC 123
           GV+ LN  AQTT DRQ VCRCL+SLI GV+YN QN+ANA ALPTKCGVNLPY I+PN +C
Sbjct: 61  GVRQLNKAAQTTPDRQDVCRCLKSLINGVTYNGQNVANAAALPTKCGVNLPYTINPNADC 120

[Close]

BLAST of Lcy04g008250.1 vs. NCBI nr
Match: XP_004151695.1 (non-specific lipid-transfer protein 1 [Cucumis sativus] >KGN54448.1 hypothetical protein Csa_012253 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 2.3e-36
Identity = 83/125 (66.40%), Postives = 95/125 (76.00%), Query Frame = 0


Query: 4   MTSNSMNI-KLSLVVAFLCVVIGGR-AIEVAISCNQVMSNLAPCVSYVTSGGSPSSTCCY 63
           M SN + I KL L V FL  VIGG    E  +SCNQV++NL PCVSYVT GG PSS CC 
Sbjct: 1   MASNLITILKLGLTVTFLYAVIGGGVTTEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCS 60

Query: 64  GVKNLNAMAQTTNDRQQVCRCLESLIKGVSYNAQNIANAGALPTKCGVNLPYNISPNVNC 123
           GVK L+  A+TT DRQ VCRCL+SL+ GV YN QN+ANA ALPTKCGV LPY+I+PNV+C
Sbjct: 61  GVKQLSTAARTTPDRQAVCRCLKSLVNGVKYNGQNVANAAALPTKCGVTLPYSINPNVDC 120

Query: 124 NTIKM 127
           NTIKM
Sbjct: 121 NTIKM 125

[Close]

BLAST of Lcy04g008250.1 vs. NCBI nr
Match: XP_038883886.1 (non-specific lipid-transfer protein 1-like [Benincasa hispida])

HSP 1 Score: 162.5 bits (410), Expect = 2.3e-36
Identity = 78/125 (62.40%), Postives = 98/125 (78.40%), Query Frame = 0


Query: 4   MTSNSM-NIKLSLVVAFLCVVIGGRAI-EVAISCNQVMSNLAPCVSYVTSGGSPSSTCCY 63
           M SN + N+KL L++ FLC VIGGR + E  ++CNQV+SNL PCV +VT GG+PS  CC 
Sbjct: 1   MASNLIGNVKLGLIITFLCTVIGGRVMTEAVVTCNQVISNLNPCVQFVTGGGAPSGNCCS 60

Query: 64  GVKNLNAMAQTTNDRQQVCRCLESLIKGVSYNAQNIANAGALPTKCGVNLPYNISPNVNC 123
           GV+ L A+AQTT DRQ VCRCL+S++ GV Y+ +N+ANA ALP+KCGV LPY I PNV+C
Sbjct: 61  GVRQLFALAQTTPDRQAVCRCLKSVVNGVRYSGKNVANAAALPSKCGVQLPYAIDPNVDC 120

Query: 124 NTIKM 127
           NTIKM
Sbjct: 121 NTIKM 125

[Close]

BLAST of Lcy04g008250.1 vs. NCBI nr
Match: XP_008463259.1 (PREDICTED: non-specific lipid-transfer protein 1-like [Cucumis melo])

HSP 1 Score: 162.2 bits (409), Expect = 3.0e-36
Identity = 82/125 (65.60%), Postives = 95/125 (76.00%), Query Frame = 0


Query: 4   MTSNSMNI-KLSLVVAFLCVVIGGR-AIEVAISCNQVMSNLAPCVSYVTSGGSPSSTCCY 63
           M SN + I KL L V  L  VIGG    E  ++CNQV+SNL+PC+SYVT GGSPS  CC 
Sbjct: 1   MASNLITILKLGLTVTLLYAVIGGGVTTEATVTCNQVVSNLSPCISYVTGGGSPSFNCCS 60

Query: 64  GVKNLNAMAQTTNDRQQVCRCLESLIKGVSYNAQNIANAGALPTKCGVNLPYNISPNVNC 123
           GV+ LN  AQTT DRQ VCRCL+SLI GV+YN QN+ANA ALPTKCGVNLPY I+PN +C
Sbjct: 61  GVRQLNKAAQTTPDRQDVCRCLKSLINGVTYNGQNVANAAALPTKCGVNLPYTINPNADC 120

Query: 124 NTIKM 127
           +TIKM
Sbjct: 121 STIKM 125

[Close]

BLAST of Lcy04g008250.1 vs. NCBI nr
Match: XP_023518220.1 (non-specific lipid-transfer protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.0 bits (406), Expect = 6.7e-36
Identity = 77/124 (62.10%), Postives = 99/124 (79.84%), Query Frame = 0


Query: 4   MTSNSM-NIKLSLVVAFLC-VVIGGRAIEVAISCNQVMSNLAPCVSYVTSGGSPSSTCCY 63
           M SN M N+K+ LVVA +C +++GGR  E A++CNQV+S+L  CVSYVT GG+PS+TCC 
Sbjct: 1   MASNGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSDLGACVSYVTGGGTPSATCCS 60

Query: 64  GVKNLNAMAQTTNDRQQVCRCLESLIKGVSYNAQNIANAGALPTKCGVNLPYNISPNVNC 123
           GV++LN +A T  DRQ VC CLESL+KGVSYNAQ +ANA ALP+KCGV LPY I P ++C
Sbjct: 61  GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPSKCGVKLPYKIDPRIDC 120

Query: 124 NTIK 126
           +TI+
Sbjct: 121 STIR 124

[Close]

BLAST of Lcy04g008250.1 vs. NCBI nr
Match: XP_023521379.1 (non-specific lipid-transfer protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 159.5 bits (402), Expect = 2.0e-35
Identity = 76/124 (61.29%), Postives = 98/124 (79.03%), Query Frame = 0


Query: 4   MTSNSM-NIKLSLVVAFLC-VVIGGRAIEVAISCNQVMSNLAPCVSYVTSGGSPSSTCCY 63
           M SN M N+K+ LVVA +C +++GGR  E A++CNQV+S+L  CVSYVT GG+PS+TCC 
Sbjct: 1   MASNGMINVKMGLVVALVCGIIMGGRVSEAAVTCNQVVSDLGACVSYVTGGGTPSATCCS 60

Query: 64  GVKNLNAMAQTTNDRQQVCRCLESLIKGVSYNAQNIANAGALPTKCGVNLPYNISPNVNC 123
           GV++LN +A T  DRQ VC CLESL+KGVSYNAQ +ANA ALP +CGV LPY I P ++C
Sbjct: 61  GVQDLNKLASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPARCGVKLPYKIDPRIDC 120

Query: 124 NTIK 126
           +TI+
Sbjct: 121 STIR 124

[Close]

BLAST of Lcy04g008250.1 vs. TAIR 10
Match: AT3G08770.1 (lipid transfer protein 6 )

HSP 1 Score: 108.6 bits (270), Expect = 3.7e-24
Identity = 53/112 (47.32%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 14  SLVVAFLCVVIGGRAIEVAISCNQVMSNLAPCVSYVTSGGSPSSTCCYGVKNLNAMAQTT 73
           SL++A +C+V+     E A+SCN V+++L PC+SYVT GG   + CC G+  L + AQT+
Sbjct: 3   SLLLA-VCLVLALHCGEAAVSCNTVIADLYPCLSYVTQGGPVPTLCCNGLTTLKSQAQTS 62

Query: 74  NDRQQVCRCLESLIKGVSYNAQNIANAGALPTKCGVNLPYNISPNVNCNTIK 126
            DRQ VCRC++S I G++ + + I NA  LP+KCGV+LPY  SP+ +C++I+
Sbjct: 63  VDRQGVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDCDSIQ 113

[Close]

BLAST of Lcy04g008250.1 vs. TAIR 10
Match: AT3G08770.2 (lipid transfer protein 6 )

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-23
Identity = 52/110 (47.27%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 14  SLVVAFLCVVIGGRAIEVAISCNQVMSNLAPCVSYVTSGGSPSSTCCYGVKNLNAMAQTT 73
           SL++A +C+V+     E A+SCN V+++L PC+SYVT GG   + CC G+  L + AQT+
Sbjct: 3   SLLLA-VCLVLALHCGEAAVSCNTVIADLYPCLSYVTQGGPVPTLCCNGLTTLKSQAQTS 62

Query: 74  NDRQQVCRCLESLIKGVSYNAQNIANAGALPTKCGVNLPYNISPNVNCNT 124
            DRQ VCRC++S I G++ + + I NA  LP+KCGV+LPY  SP+ +C++
Sbjct: 63  VDRQGVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDCDS 111

[Close]

BLAST of Lcy04g008250.1 vs. TAIR 10
Match: AT5G01870.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 105.5 bits (262), Expect = 3.1e-23
Identity = 52/115 (45.22%), Postives = 74/115 (64.35%), Query Frame = 0


Query: 11  IKLSLVVAFLCVVIGGRAIEVAISCNQVMSNLAPCVSYVTSGGSPSSTCCYGVKNLNAMA 70
           +++ L +  L   I     E AISCN V +NL PCV YV  GG+   +CC G++ L+  A
Sbjct: 2   MRVVLPLCLLLASIFAWGSEAAISCNAVQANLYPCVVYVVQGGAIPYSCCNGIRMLSKQA 61

Query: 71  QTTNDRQQVCRCLESLIKGVSYNAQNIANAGALPTKCGVNLPYNISPNVNCNTIK 126
            + +D+Q VCRC++S++  VSY++  +  A ALP KCGV LPY I P+ NCN+IK
Sbjct: 62  TSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116

[Close]

BLAST of Lcy04g008250.1 vs. TAIR 10
Match: AT5G59310.1 (lipid transfer protein 4 )

HSP 1 Score: 104.4 bits (259), Expect = 6.9e-23
Identity = 56/117 (47.86%), Postives = 71/117 (60.68%), Query Frame = 0


Query: 9   MNIKLSLVVAFLCVVIGGRAIEVAISCNQVMSNLAPCVSYVTSGGSPSSTCCYGVKNLNA 68
           M   L     F+  V    +++ AI+C  V S+L+PC+ Y++ GG     CC GVK LN 
Sbjct: 1   MAFALRFFTCFVLTVFIVASVDAAITCGTVASSLSPCLGYLSKGGVVPPPCCAGVKKLNG 60

Query: 69  MAQTTNDRQQVCRCLESLIKGVSYNAQNIANAGALPTKCGVNLPYNISPNVNCNTIK 126
           MAQTT DRQQ CRCL+S  KGV     N + A  LP KCGV++PY IS + NC TIK
Sbjct: 61  MAQTTPDRQQACRCLQSAAKGV-----NPSLASGLPGKCGVSIPYPISTSTNCATIK 112

[Close]

BLAST of Lcy04g008250.1 vs. TAIR 10
Match: AT5G59320.1 (lipid transfer protein 3 )

HSP 1 Score: 104.4 bits (259), Expect = 6.9e-23
Identity = 53/110 (48.18%), Postives = 73/110 (66.36%), Query Frame = 0


Query: 16  VVAFLCVVIGGRAIEVAISCNQVMSNLAPCVSYVTSGGSPSSTCCYGVKNLNAMAQTTND 75
           +V  +C+V    +++ AISC  V  +LAPC +Y++ GG    +CC GVK LN+MA+TT D
Sbjct: 11  LVLTVCIV---ASVDAAISCGTVAGSLAPCATYLSKGGLVPPSCCAGVKTLNSMAKTTPD 70

Query: 76  RQQVCRCLESLIKGVSYNAQNIANAGALPTKCGVNLPYNISPNVNCNTIK 126
           RQQ CRC++S  K +S    N + A  LP KCGV++PY IS + NCN IK
Sbjct: 71  RQQACRCIQSTAKSIS--GLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115

The following BLAST results are available for this feature:

BLAST of Lcy04g008250.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q43019	4.5e-27	45.53	Non-specific lipid-transfer protein 3 OS=Prunus dulcis OX=3755 PE=2 SV=1	[more]
Q9M5X8	2.1e-24	52.63	Non-specific lipid-transfer protein OS=Prunus avium OX=42229 PE=1 SV=1	[more]
Q9M5X6	6.1e-24	50.00	Non-specific lipid-transfer protein OS=Pyrus communis OX=23211 PE=1 SV=1	[more]
A0AT29	1.0e-23	50.43	Non-specific lipid-transfer protein 2 OS=Lens culinaris OX=3864 PE=1 SV=1	[more]
Q43017	1.4e-23	52.63	Non-specific lipid-transfer protein 1 OS=Prunus dulcis OX=3755 PE=3 SV=1	[more]

BLAST of Lcy04g008250.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY77	1.1e-36	66.40	Non-specific lipid-transfer protein OS=Cucumis sativus OX=3659 GN=Csa_4G333620 P...	[more]
A0A1S3CIS8	1.5e-36	65.60	Non-specific lipid-transfer protein OS=Cucumis melo OX=3656 GN=LOC103501462 PE=3...	[more]
A0A6J1HTX7	1.6e-35	59.84	Non-specific lipid-transfer protein OS=Cucurbita maxima OX=3661 GN=LOC111466126 ...	[more]
A0A6J1EBM4	1.6e-35	60.66	Non-specific lipid-transfer protein OS=Cucurbita moschata OX=3662 GN=LOC11143253...	[more]
A0A5D3CEZ6	8.0e-35	64.75	Non-specific lipid-transfer protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]

BLAST of Lcy04g008250.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151695.1	2.3e-36	66.40	non-specific lipid-transfer protein 1 [Cucumis sativus] >KGN54448.1 hypothetical...	[more]
XP_038883886.1	2.3e-36	62.40	non-specific lipid-transfer protein 1-like [Benincasa hispida]	[more]
XP_008463259.1	3.0e-36	65.60	PREDICTED: non-specific lipid-transfer protein 1-like [Cucumis melo]	[more]
XP_023518220.1	6.7e-36	62.10	non-specific lipid-transfer protein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_023521379.1	2.0e-35	61.29	non-specific lipid-transfer protein 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lcy04g008250.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08770.1	3.7e-24	47.32	lipid transfer protein 6	[more]
AT3G08770.2	1.8e-23	47.27	lipid transfer protein 6	[more]
AT5G01870.1	3.1e-23	45.22	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT5G59310.1	6.9e-23	47.86	lipid transfer protein 4	[more]
AT5G59320.1	6.9e-23	48.18	lipid transfer protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 54..68 score: 46.15 coord: 94..111 score: 39.49 coord: 112..123 score: 48.46 coord: 75..90 score: 40.0 coord: 34..50 score: 49.77
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PANTHER	PTHR33076	FAMILY NOT NAMED	coord: 8..123
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PROSITE	PS00597	PLANT_LTP	coord: 103..124
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 35..121 e-value: 1.7E-13 score: 60.8
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF00234	Tryp_alpha_amyl	coord: 35..119 e-value: 9.5E-9 score: 35.6
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 32..126 e-value: 5.7E-30 score: 105.5
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 33..124
None	No IPR available	PANTHER	PTHR33076:SF50	NON-SPECIFIC LIPID-TRANSFER PROTEIN 10-RELATED	coord: 8..123
None	No IPR available	CDD	cd01960	nsLTP1	coord: 33..122 e-value: 1.93174E-36 score: 117.836

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy04g008250	Lcy04g008250	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy04g008250.1.exon2	Lcy04g008250.1.exon2	exon
Lcy04g008250.1.exon1	Lcy04g008250.1.exon1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy04g008250.1.utr3p1	Lcy04g008250.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy04g008250.1.cds2	Lcy04g008250.1.cds2	CDS
Lcy04g008250.1.cds1	Lcy04g008250.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy04g008250.1.utr5p1	Lcy04g008250.1.utr5p1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy04g008250.1	Lcy04g008250.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
molecular_function	GO:0008289	lipid binding