Lcy03g016890.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy03g016890.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr03: 50683067 .. 50683611 (-)
Sequence length	545
RNA-Seq Expression	Lcy03g016890.1
Synteny	Lcy03g016890.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCAAATCAGAGAGCAAAAAAGAAAGTAGGCTAGAGGGCCAAGCTGAAGTTGAAGAAGAACCAAAGAGGAAAGGGGCATGGCCATGGGAATGGGAATGGGGAGAAGAAAATATGAGAGGCTAAGAAGTGAAAATGTTGAAGAAGAAGTTGATCAAGAAGAGAAGAACAAGAATAATAATCAAACAATAACATTGGGAGGAGGAGGAGGAAGAAGAAGCAATCTTGTAGAGCTATGGAGGAAAATGGAAGGCAAGGCAAAATTAGGGCTGCCCTTCAAAAGGTTCATAGCTACTTATGAAGCAATGATGCTTTGCTTTGCTCACAAGTTTGTGCTGCCTCAACAATGGTAATCTTCACTCAACCTTTCTTTTTTTTTTTTCAGTTCTAGCCTTCTAGGGTTTTTAGTTTCTTCTCTCTATCTCTTTCTACAAGCTAAAAATGGGGAAATTTTTCTCTGATGGTTTAGTGGTGTATTTACTTTTGGTGTCTCCCCCACAATGTATGTTTTAATGTTAATAAATTTACATATGTTTATTATCAGTGA

mRNA sequence

AAGCAAATCAGAGAGCAAAAAAGAAAGTAGGCTAGAGGGCCAAGCTGAAGTTGAAGAAGAACCAAAGAGGAAAGGGGCATGGCCATGGGAATGGGAATGGGGAGAAGAAAATATGAGAGGCTAAGAAGTGAAAATGTTGAAGAAGAAGTTGATCAAGAAGAGAAGAACAAGAATAATAATCAAACAATAACATTGGGAGGAGGAGGAGGAAGAAGAAGCAATCTTGTAGAGCTATGGAGGAAAATGGAAGGCAAGGCAAAATTAGGGCTGCCCTTCAAAAGGTTCATAGCTACTTATGAAGCAATGATGCTTTGCTTTGCTCACAAGTTTGTGCTGCCTCAACAATGGTAATCTTCACTCAACCTTTCTTTTTTTTTTTTCAGTTCTAGCCTTCTAGGGTTTTTAGTTTCTTCTCTCTATCTCTTTCTACAAGCTAAAAATGGGGAAATTTTTCTCTGATGGTTTAGTGGTGTATTTACTTTTGGTGTCTCCCCCACAATGTATGTTTTAATGTTAATAAATTTACATATGTTTATTATCAGTGA

Coding sequence (CDS)

ATGGCCATGGGAATGGGAATGGGGAGAAGAAAATATGAGAGGCTAAGAAGTGAAAATGTTGAAGAAGAAGTTGATCAAGAAGAGAAGAACAAGAATAATAATCAAACAATAACATTGGGAGGAGGAGGAGGAAGAAGAAGCAATCTTGTAGAGCTATGGAGGAAAATGGAAGGCAAGGCAAAATTAGGGCTGCCCTTCAAAAGGTTCATAGCTACTTATGAAGCAATGATGCTTTGCTTTGCTCACAAGTTTGTGCTGCCTCAACAATGGTAA

Protein sequence

MAMGMGMGRRKYERLRSENVEEEVDQEEKNKNNNQTITLGGGGGRRSNLVELWRKMEGKAKLGLPFKRFIATYEAMMLCFAHKFVLPQQW

Homology

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BLAST of Lcy03g016890.1 vs. NCBI nr
Match: KAG6587665.1 (hypothetical protein SDJN03_16230, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101.7 bits (252), Expect = 3.4e-18
Identity = 62/92 (67.39%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 5  MGMGRRKYERLRSENVEEEVDQEEKNKNNNQTITLGGGGG----RRSNL-VELWRKMEGK 64
          MG GRR+YERLR E+   EVD EE+N   N  ITLGGGGG    RRSN  VELW+KMEG 
Sbjct: 1  MGKGRRRYERLRRES--SEVD-EEQNHIKNSAITLGGGGGWKGRRRSNQGVELWKKMEGS 60

Query: 65 A-KLGLPFKRFIATYEAMMLCFAHKFVLPQQW 91
          + KLG PFK FIATYEA+ML FAHK V+PQQW
Sbjct: 61 SPKLGHPFKTFIATYEAIMLYFAHKLVMPQQW 89

The following BLAST results are available for this feature:

BLAST of Lcy03g016890.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy03g016890.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy03g016890.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6587665.1	3.4e-18	67.39	hypothetical protein SDJN03_16230, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lcy03g016890.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 12..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..30

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy03g016890	Lcy03g016890	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy03g016890.1.exon1	Lcy03g016890.1.exon1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy03g016890.1.utr3p1	Lcy03g016890.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy03g016890.1.cds1	Lcy03g016890.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy03g016890.1.utr5p1	Lcy03g016890.1.utr5p1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy03g016890.1	Lcy03g016890.1-protein	polypeptide