Lcy03g003820.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy03g003820.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Histone H2A
Location	Chr03: 17648882 .. 17650253 (+)
Sequence length	980
RNA-Seq Expression	Lcy03g003820.1
Synteny	Lcy03g003820.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAATACACAAGACTCTTCGCCATAAATCCGATCATCTCAATAACCCCAAATTAGGGTTCTTGATTTTCATCTCTTCTTTCTCAAAATCCAGCGCTTTTTTCCGATTCAACAATGAGTTCCACCGGCGGTTCCACTAAAGGAGGCAGAGGAAAGCCCAAGGCCACCAAATCCGTCTCCCGATCGCACAAAGCCGGTCTCCAGTTCCCCGTCGGTAGAATCGCGAGGTTTCTCAAGGCCGGAAAGTACGCTGAGCGTGTAGGCGCCGGAGCTCCGGTCTACTTGTCCGCCGTGCTTGAGTATCTCGCCGCTGAGGTAAACAGATCCTCTGTTCTTGTGCTTTTCGTAGTTGATTTAGGATGTGTTTGTTTGGATTAATTTCTTAAGTGATTTTGTAGAGCTATAAGTGTTTATTTTCTTAAAATTTAGGGTTTCTTTTTGTAACAATTTTTTTAAACAATCAATTTGGTTTGAGATCGTCTTTTAAGAATCATGAAGCTAATTATTTAAGAATGATTGATTGAAAATCCCTTTAGAATCGTTTTCTAGCAATTTAACACTCGTAGGGTCACATTTAGTTGTTGTGTATCACTCTTAAGAAAACGTAATCAAACACAGGTCTTTGTTCAAACAAACTTGGAATTCTGTTTTGATTTAGGTGGATGTATCTTTAACTTGTCTTTTTGGTTCATTGTGATTGGAATTAGGTTTTGGAGCTTGCTGGGAATGCTGCAAGAGACAACAAGAAGAATCGTATTGTGCCAAGGCATATTCAGCTTGCAGTAAGGAACGATGAGGAGTTGAGTAAGCTTTTGGGATCTGTAACCATTGCTAATGGAGGAGTTTTGCCCAACATTCACCAAACCCTTTTGCCCAAAAAGGCTGGCAAAGATAAGGGTGATATTGGGTCTGCATCACAGGAATTCTAGGGTTTTTTTTAGGGGTTTTTTCTTTTGGAGGATTTTGTTTCTTTACTAGAGATGACAGTGTTCTGCTGTGAAATGGATGGGGTTTGGTTCAGTTCCATTTGTTGGCTCCTCTGTGTTGTGTCATCTTCATTTTGTTCAGATGCATATAGTTTATATCCATGTGAGGTTGTTTGAGGATTTGTGTTTCAAGAATGATGATGAGATCAAACTCCTTTTCACAGTTGGAAGATGTATGAAATGGATGTTTCTTGTTCAAAGCATTCAATTTTTGGTAACATTTTCAGAATTCTGCAGTGGGAGAGGTTTGATTATTTTTGAATCTTGCATTTGGTTAGAATCATTTTTAAATTAAGATAAGATTATTTTTGCTCCTGTGAGTGGTGACCGAGAATCTAGTTAGATACAAGTACTTGTTATCTGAACCATTTAAGGCTGCGTAAACATT

mRNA sequence

CCAATACACAAGACTCTTCGCCATAAATCCGATCATCTCAATAACCCCAAATTAGGGTTCTTGATTTTCATCTCTTCTTTCTCAAAATCCAGCGCTTTTTTCCGATTCAACAATGAGTTCCACCGGCGGTTCCACTAAAGGAGGCAGAGGAAAGCCCAAGGCCACCAAATCCGTCTCCCGATCGCACAAAGCCGGTCTCCAGTTCCCCGTCGGTAGAATCGCGAGGTTTCTCAAGGCCGGAAAGTACGCTGAGCGTGTAGGCGCCGGAGCTCCGGTCTACTTGTCCGCCGTGCTTGAGTATCTCGCCGCTGAGGTTTTGGAGCTTGCTGGGAATGCTGCAAGAGACAACAAGAAGAATCGTATTGTGCCAAGGCATATTCAGCTTGCAGTAAGGAACGATGAGGAGTTGAGTAAGCTTTTGGGATCTGTAACCATTGCTAATGGAGGAGTTTTGCCCAACATTCACCAAACCCTTTTGCCCAAAAAGGCTGGCAAAGATAAGGGTGATATTGGGTCTGCATCACAGGAATTCTAGGGTTTTTTTTAGGGGTTTTTTCTTTTGGAGGATTTTGTTTCTTTACTAGAGATGACAGTGTTCTGCTGTGAAATGGATGGGGTTTGGTTCAGTTCCATTTGTTGGCTCCTCTGTGTTGTGTCATCTTCATTTTGTTCAGATGCATATAGTTTATATCCATGTGAGGTTGTTTGAGGATTTGTGTTTCAAGAATGATGATGAGATCAAACTCCTTTTCACAGTTGGAAGATGTATGAAATGGATGTTTCTTGTTCAAAGCATTCAATTTTTGGTAACATTTTCAGAATTCTGCAGTGGGAGAGGTTTGATTATTTTTGAATCTTGCATTTGGTTAGAATCATTTTTAAATTAAGATAAGATTATTTTTGCTCCTGTGAGTGGTGACCGAGAATCTAGTTAGATACAAGTACTTGTTATCTGAACCATTTAAGGCTGCGTAAACATT

Coding sequence (CDS)

ATGAGTTCCACCGGCGGTTCCACTAAAGGAGGCAGAGGAAAGCCCAAGGCCACCAAATCCGTCTCCCGATCGCACAAAGCCGGTCTCCAGTTCCCCGTCGGTAGAATCGCGAGGTTTCTCAAGGCCGGAAAGTACGCTGAGCGTGTAGGCGCCGGAGCTCCGGTCTACTTGTCCGCCGTGCTTGAGTATCTCGCCGCTGAGGTTTTGGAGCTTGCTGGGAATGCTGCAAGAGACAACAAGAAGAATCGTATTGTGCCAAGGCATATTCAGCTTGCAGTAAGGAACGATGAGGAGTTGAGTAAGCTTTTGGGATCTGTAACCATTGCTAATGGAGGAGTTTTGCCCAACATTCACCAAACCCTTTTGCCCAAAAAGGCTGGCAAAGATAAGGGTGATATTGGGTCTGCATCACAGGAATTCTAG

Protein sequence

MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKAGKDKGDIGSASQEF

Homology

[Close]

BLAST of Lcy03g003820.1 vs. ExPASy Swiss-Prot
Match: Q9S9K7 (Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.0e-64
Identity = 133/142 (93.66%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 1   MSSTGGS--TKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60
           MSS  GS  TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS
Sbjct: 1   MSSGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60

Query: 61  AVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 120
           AVLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 120

Query: 121 QTLLPKKAGKDKGDIGSASQEF 141
           QTLLP K GK+KGDIGSASQEF
Sbjct: 121 QTLLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Lcy03g003820.1 vs. ExPASy Swiss-Prot
Match: O04848 (Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.3e-64
Identity = 131/141 (92.91%), Postives = 134/141 (95.04%), Query Frame = 0


Query: 3   STG---GSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 62
           STG   G+TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSA
Sbjct: 2   STGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSA 61

Query: 63  VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 122
           VLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ
Sbjct: 62  VLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 121

Query: 123 TLLPKKAGKDKGDIGSASQEF 141
           TLLP K GK+KGDIGSASQEF
Sbjct: 122 TLLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Lcy03g003820.1 vs. ExPASy Swiss-Prot
Match: O65759 (Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.0e-64
Identity = 131/140 (93.57%), Postives = 134/140 (95.71%), Query Frame = 0


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSST  +TKGGRGKPKA+KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSST-ATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNK NRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKAGKDKGDIGSASQEF 141
           LLPKK GK KG+IGSASQEF
Sbjct: 121 LLPKKVGKGKGEIGSASQEF 139

[Close]

BLAST of Lcy03g003820.1 vs. ExPASy Swiss-Prot
Match: P35063 (Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.6e-63
Identity = 128/140 (91.43%), Postives = 134/140 (95.71%), Query Frame = 0


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSS+G   KGGRGK K+TKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AV
Sbjct: 1   MSSSG--AKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ 
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQV 120

Query: 121 LLPKKAGKDKGDIGSASQEF 141
           LLPKK+GKDKG+IGSASQEF
Sbjct: 121 LLPKKSGKDKGEIGSASQEF 138

[Close]

BLAST of Lcy03g003820.1 vs. ExPASy Swiss-Prot
Match: A2ZL69 (Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 1.8e-61
Identity = 126/140 (90.00%), Postives = 130/140 (92.86%), Query Frame = 0


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSS GG   GGRGK K +KSVSRS KAGLQFPVGRIAR+LKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSAGGG--GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG+VTIA GGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQT 120

Query: 121 LLPKKAGKDKGDIGSASQEF 141
           LLPKK GKDK DIGSASQEF
Sbjct: 121 LLPKKGGKDKADIGSASQEF 138

[Close]

BLAST of Lcy03g003820.1 vs. ExPASy TrEMBL
Match: A0A5D3CFR7 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003450 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 4.7e-68
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKAGKDKGDIGSASQEF 141
           LLPKK GKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of Lcy03g003820.1 vs. ExPASy TrEMBL
Match: A0A0A0LW51 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_1G572950 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 4.7e-68
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKAGKDKGDIGSASQEF 141
           LLPKK GKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of Lcy03g003820.1 vs. ExPASy TrEMBL
Match: A0A1S3BQI1 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103492212 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 4.7e-68
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKAGKDKGDIGSASQEF 141
           LLPKK GKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of Lcy03g003820.1 vs. ExPASy TrEMBL
Match: A0A6J1DMK8 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111021819 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.8e-67
Identity = 138/140 (98.57%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSS GGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSAGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKAGKDKGDIGSASQEF 141
           LLPKK GKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of Lcy03g003820.1 vs. ExPASy TrEMBL
Match: V4TA53 (Histone H2A OS=Citrus clementina OX=85681 GN=CICLE_v10002804mg PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 8.8e-67
Identity = 137/140 (97.86%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSTGGSTKGGRGKPKA+KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKAGKDKGDIGSASQEF 141
           LLPKK GK KGDIGSASQEF
Sbjct: 121 LLPKKVGKGKGDIGSASQEF 140

[Close]

BLAST of Lcy03g003820.1 vs. NCBI nr
Match: KAE8653389.1 (hypothetical protein Csa_007458 [Cucumis sativus])

HSP 1 Score: 266.9 bits (681), Expect = 9.6e-68
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 70  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 129

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 130 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 189

Query: 121 LLPKKAGKDKGDIGSASQEF 141
           LLPKK GKDKGDIGSASQEF
Sbjct: 190 LLPKKVGKDKGDIGSASQEF 209

[Close]

BLAST of Lcy03g003820.1 vs. NCBI nr
Match: XP_004135645.1 (histone H2AX [Cucumis sativus] >XP_008450716.1 PREDICTED: histone H2AX [Cucumis melo])

HSP 1 Score: 266.9 bits (681), Expect = 9.6e-68
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKAGKDKGDIGSASQEF 141
           LLPKK GKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of Lcy03g003820.1 vs. NCBI nr
Match: TYK10200.1 (histone H2AX [Cucumis melo var. makuwa])

HSP 1 Score: 266.9 bits (681), Expect = 9.6e-68
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKAGKDKGDIGSASQEF 141
           LLPKK GKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of Lcy03g003820.1 vs. NCBI nr
Match: XP_022154594.1 (probable histone H2AXb [Momordica charantia])

HSP 1 Score: 265.0 bits (676), Expect = 3.7e-67
Identity = 138/140 (98.57%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSS GGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSAGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKAGKDKGDIGSASQEF 141
           LLPKK GKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of Lcy03g003820.1 vs. NCBI nr
Match: XP_038878621.1 (histone H2AX [Benincasa hispida])

HSP 1 Score: 264.6 bits (675), Expect = 4.8e-67
Identity = 138/140 (98.57%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSTG STKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGSSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKAGKDKGDIGSASQEF 141
           LLPKK GKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of Lcy03g003820.1 vs. TAIR 10
Match: AT1G54690.1 (gamma histone variant H2AX )

HSP 1 Score: 247.3 bits (630), Expect = 7.4e-66
Identity = 133/142 (93.66%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 1   MSSTGGS--TKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60
           MSS  GS  TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS
Sbjct: 1   MSSGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60

Query: 61  AVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 120
           AVLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 120

Query: 121 QTLLPKKAGKDKGDIGSASQEF 141
           QTLLP K GK+KGDIGSASQEF
Sbjct: 121 QTLLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Lcy03g003820.1 vs. TAIR 10
Match: AT1G08880.1 (Histone superfamily protein )

HSP 1 Score: 246.1 bits (627), Expect = 1.6e-65
Identity = 131/141 (92.91%), Postives = 134/141 (95.04%), Query Frame = 0


Query: 3   STG---GSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 62
           STG   G+TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSA
Sbjct: 2   STGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSA 61

Query: 63  VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 122
           VLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ
Sbjct: 62  VLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 121

Query: 123 TLLPKKAGKDKGDIGSASQEF 141
           TLLP K GK+KGDIGSASQEF
Sbjct: 122 TLLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Lcy03g003820.1 vs. TAIR 10
Match: AT4G27230.1 (histone H2A 2 )

HSP 1 Score: 199.9 bits (507), Expect = 1.3e-51
Identity = 107/124 (86.29%), Postives = 109/124 (87.90%), Query Frame = 0


Query: 11  GRGKP----KATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 70
           GRGK      A KS SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 71  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKA 130
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

[Close]

BLAST of Lcy03g003820.1 vs. TAIR 10
Match: AT4G27230.2 (histone H2A 2 )

HSP 1 Score: 199.9 bits (507), Expect = 1.3e-51
Identity = 107/124 (86.29%), Postives = 109/124 (87.90%), Query Frame = 0


Query: 11  GRGKP----KATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 70
           GRGK      A KS SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 71  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKA 130
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

[Close]

BLAST of Lcy03g003820.1 vs. TAIR 10
Match: AT5G54640.1 (Histone superfamily protein )

HSP 1 Score: 198.0 bits (502), Expect = 5.1e-51
Identity = 107/125 (85.60%), Postives = 109/125 (87.20%), Query Frame = 0


Query: 6   GSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 65
           G T G  G  KAT   SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLA
Sbjct: 5   GKTLGSGGAKKAT---SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLA 64

Query: 66  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 125
           AEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK
Sbjct: 65  AEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKK 124

Query: 126 AGKDK 131
           AG  K
Sbjct: 125 AGASK 126

The following BLAST results are available for this feature:

BLAST of Lcy03g003820.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S9K7	1.0e-64	93.66	Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1	[more]
O04848	2.3e-64	92.91	Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1	[more]
O65759	3.0e-64	93.57	Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1	[more]
P35063	2.6e-63	91.43	Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1	[more]
A2ZL69	1.8e-61	90.00	Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3...	[more]

BLAST of Lcy03g003820.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CFR7	4.7e-68	99.29	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003450 PE...	[more]
A0A0A0LW51	4.7e-68	99.29	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_1G572950 PE=3 SV=1	[more]
A0A1S3BQI1	4.7e-68	99.29	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103492212 PE=3 SV=1	[more]
A0A6J1DMK8	1.8e-67	98.57	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111021819 PE=3 SV=1	[more]
V4TA53	8.8e-67	97.86	Histone H2A OS=Citrus clementina OX=85681 GN=CICLE_v10002804mg PE=3 SV=1	[more]

BLAST of Lcy03g003820.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653389.1	9.6e-68	99.29	hypothetical protein Csa_007458 [Cucumis sativus]	[more]
XP_004135645.1	9.6e-68	99.29	histone H2AX [Cucumis sativus] >XP_008450716.1 PREDICTED: histone H2AX [Cucumis ...	[more]
TYK10200.1	9.6e-68	99.29	histone H2AX [Cucumis melo var. makuwa]	[more]
XP_022154594.1	3.7e-67	98.57	probable histone H2AXb [Momordica charantia]	[more]
XP_038878621.1	4.8e-67	98.57	histone H2AX [Benincasa hispida]	[more]

BLAST of Lcy03g003820.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54690.1	7.4e-66	93.66	gamma histone variant H2AX	[more]
AT1G08880.1	1.6e-65	92.91	Histone superfamily protein	[more]
AT4G27230.1	1.3e-51	86.29	histone H2A 2	[more]
AT4G27230.2	1.3e-51	86.29	histone H2A 2	[more]
AT5G54640.1	5.1e-51	85.60	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 48..63 score: 84.58 coord: 77..91 score: 75.49 coord: 63..76 score: 89.46 coord: 19..41 score: 69.77 coord: 105..123 score: 70.23
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 8..128 e-value: 3.5E-77 score: 272.4
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 13..125 e-value: 3.9678E-67 score: 197.172
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 13..94 e-value: 1.3E-14 score: 54.7
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 6..133 e-value: 1.8E-63 score: 214.1
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 22..125
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 97..130 e-value: 9.9E-19 score: 66.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR23430:SF322	HISTONE H2A	coord: 5..138
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 5..138
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 27..33

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy03g003820	Lcy03g003820	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy03g003820.1.utr5p1	Lcy03g003820.1.utr5p1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy03g003820.1.exon1	Lcy03g003820.1.exon1	exon
Lcy03g003820.1.exon2	Lcy03g003820.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy03g003820.1.cds1	Lcy03g003820.1.cds1	CDS
Lcy03g003820.1.cds2	Lcy03g003820.1.cds2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy03g003820.1.utr3p1	Lcy03g003820.1.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy03g003820.1	Lcy03g003820.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity