Lcy03g000970.1 (mRNA) Sponge gourd (P93075) v1

Overview
NameLcy03g000970.1
TypemRNA
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase
LocationChr03: 3043558 .. 3044808 (+)
Sequence length324
RNA-Seq ExpressionLcy03g000970.1
SyntenyLcy03g000970.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGTCAGTACTCGGCGAAAGGTCAATAGAGTTCGAGGCCCGATGGATGGCAGAGGAAGATGGATAGAAGATGATGCAGGTATGGAGAATATTACAAATCAATATTTTCAAAATCTATTCCAAACTTCTAACCCCAACATGGACTCAATTGAGTTTATTTTGGTAGCAATCCCTATCGGTATCATGGATGAGCAAAATAAGGTGTTGTTGAAGGACTTTACTCGAGAAAAAATCTATATGGTGATAAAGAATATGCACCCTTCTAAGGCCCAGGACCAGATGGGATCCAGGCAATTGTTTATAAAAAAATATTGGGATATCATTGGAGAGGAGGTTTGTGATTTTTGCTCAGATGTCTTAAATGGAGAAGGATCTTTAAGTCAAGTTAATAAAACCTATATAGCGTCAATTCCAAAGACCAAAGATCCTTGCAATATGAAGGATTTTCCCCCCATTAGTCTATGTTCAGTCATTTACAAAATAATTGCTAAGGCTCTAGCCAACAGATTGAGAACAGTGTTAGATAAGATCATCTCCCCTAGTTAATCAGCTTTTGTGTCGGGAAGAATCATCTCTAATAATACTGTGATCGGGTTTGAATGCCTCCATGCAATAAAGAACAAAAGAGGTGGAAAAGGAGGTGTAGTTGCGCTTAAGTTAGATATGAGCAAAGCGTATGATCAAGTGGAATAGAGCTATATAAGGGAGGTTATGAGCAAGATGGGATTTGACAGAAGATGGATTGACAAAATAATGAAGTGCGTGGAGTCATTGAGCTTCCAAGTTCTCCTCAATAGGATACCTCGAGTAGAATTCAAACCAAATCGAGGTCATAGGCAAGAGGATCCTTTATCTTCATATCTATTCTTGATTTTTGTTGAGAGCCTATCGAGTATCCTTATTAATTTAGAAAGGAGGAAAGAGTTATTAGGTTTGCGTATCAATAATTATTGTCCTTCTATAACACATCTCTAATCTGCTGATGATAGTCTTTTGTTCTTTAAAGTTGTGGAAATAGATTGTAGGTCTATTAAAAGGCTTCTCTATAACTATGAAAGGGCGTCGGGACAAACCATTAATTTTGAGAAATCATCTTTTATGGTGAGTCTGAACACGAATCCAGACCAAGTTGACAAGATCAAGGAGCTTCTAGGAGTCCAATATAAGGAAAGTTTGGGTCAATACCTAGGCCTTTCGTCTCAAATTGGCAAGAGTAAGAAGGAAGTTTTTGACAACATCAAAGATTGA

mRNA sequence

ATGACAGTCAGTACTCGGCGAAAGGTCAATAGAGTTCGAGGCCCGATGGATGGCAGAGGAAGATGGATAGAAGATGATGCAGTTGTGGAAATAGATTGTAGGTCTATTAAAAGGCTTCTCTATAACTATGAAAGGGCGTCGGGACAAACCATTAATTTTGAGAAATCATCTTTTATGGTGAGTCTGAACACGAATCCAGACCAAGTTGACAAGATCAAGGAGCTTCTAGGAGTCCAATATAAGGAAAGTTTGGGTCAATACCTAGGCCTTTCGTCTCAAATTGGCAAGAGTAAGAAGGAAGTTTTTGACAACATCAAAGATTGA

Coding sequence (CDS)

ATGACAGTCAGTACTCGGCGAAAGGTCAATAGAGTTCGAGGCCCGATGGATGGCAGAGGAAGATGGATAGAAGATGATGCAGTTGTGGAAATAGATTGTAGGTCTATTAAAAGGCTTCTCTATAACTATGAAAGGGCGTCGGGACAAACCATTAATTTTGAGAAATCATCTTTTATGGTGAGTCTGAACACGAATCCAGACCAAGTTGACAAGATCAAGGAGCTTCTAGGAGTCCAATATAAGGAAAGTTTGGGTCAATACCTAGGCCTTTCGTCTCAAATTGGCAAGAGTAAGAAGGAAGTTTTTGACAACATCAAAGATTGA

Protein sequence

MTVSTRRKVNRVRGPMDGRGRWIEDDAVVEIDCRSIKRLLYNYERASGQTINFEKSSFMVSLNTNPDQVDKIKELLGVQYKESLGQYLGLSSQIGKSKKEVFDNIKD
Homology
BLAST of Lcy03g000970.1 vs. ExPASy TrEMBL
Match: A0A6J1DUG8 (uncharacterized protein LOC111024135 OS=Momordica charantia OX=3673 GN=LOC111024135 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 6.6e-14
Identity = 52/109 (47.71%), Postives = 71/109 (65.14%), Query Frame = 0

Query: 5   TRRKVNRVRGPMDGRGRWIEDDAVVEI-----DCRSIKRLLYNYERA-SGQTINFEKSSF 64
           TR K+NR   P+     +  DD ++       +CRSIK +L +YE+A SGQ IN +KS F
Sbjct: 485 TRLKINRRCPPIS--HLFYADDCLLFFKASTGNCRSIKGILESYEKASSGQCINLDKSMF 544

Query: 65  MVSLNTNPDQVDKIKELLGVQYKESLGQYLGLSSQIGKSKKEVFDNIKD 108
           +VS NT    V  I++ L V + ESLGQYLGL SQ G++K++VF+NIKD
Sbjct: 545 IVSKNTKEQMVGVIRQELMVNHTESLGQYLGLPSQTGRNKRQVFNNIKD 591

BLAST of Lcy03g000970.1 vs. ExPASy TrEMBL
Match: A0A2N9GTH0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30581 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 9.9e-10
Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = 0

Query: 25  DDAVV-----EIDCRSIKRLLYNYERASGQTINFEKSSFMVSLNTNPDQVDKIKELLGVQ 84
           DD++V        C+++ ++L  YE+ASGQ +N EK++   S NT+ +  DKI  ++GV 
Sbjct: 195 DDSIVFYHADPTQCQNLLKILEVYEKASGQAMNREKTALFFSKNTSSETKDKIMRIVGVN 254

Query: 85  YKESLGQYLGLSSQIGKSKKEVFDNIKD 108
             +S  QYLGL S IG+SKK+ FD +KD
Sbjct: 255 EIKSHEQYLGLPSIIGRSKKKAFDGLKD 282

BLAST of Lcy03g000970.1 vs. ExPASy TrEMBL
Match: A0A2N9ELM3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3493 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 38/88 (43.18%), Postives = 56/88 (63.64%), Query Frame = 0

Query: 25  DDAVV-----EIDCRSIKRLLYNYERASGQTINFEKSSFMVSLNTNPDQVDKIKELLGVQ 84
           DD++V      + C+++  +L  YE+ASGQ +N EK +   S NT+ +  DKI  ++GV 
Sbjct: 147 DDSIVFCHANPVQCQNLLMILEVYEKASGQAMNREKIALFFSKNTSSETKDKIMRIVGVS 206

Query: 85  YKESLGQYLGLSSQIGKSKKEVFDNIKD 108
             +S  QYLGL S IG+SKK+ FD +KD
Sbjct: 207 EIKSHEQYLGLPSIIGRSKKKAFDGLKD 234

BLAST of Lcy03g000970.1 vs. ExPASy TrEMBL
Match: A0A5B6UMS8 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_018051 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.2e-09
Identity = 34/74 (45.95%), Postives = 51/74 (68.92%), Query Frame = 0

Query: 34  RSIKRLLYNYERASGQTINFEKSSFMVSLNTNPDQVDKIKELLGVQYKESLGQYLGLSSQ 93
           R +K +L +YE+ SGQ +NF KS+   S NT+ +   +I+E+LG++   +L +YLGL + 
Sbjct: 669 RFLKEILKSYEQCSGQCVNFNKSTIFFSTNTSEEMKKEIEEVLGMRSATNLEKYLGLPNI 728

Query: 94  IGKSKKEVFDNIKD 108
           +GK KKE F NIKD
Sbjct: 729 VGKRKKESFQNIKD 742

BLAST of Lcy03g000970.1 vs. ExPASy TrEMBL
Match: A0A2Z6N029 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_226660 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.8e-09
Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 28  VVEIDCRSIKRLLYNYERASGQTINFEKSSFMVSLNTNPDQVDKIKELLGVQYKESLGQY 87
           V E++C  +K++L +YE+ASGQ IN+ KS    S NT  +  ++I  +LGV      G+Y
Sbjct: 247 VREVEC--MKKILNDYEKASGQAINYAKSEVYFSRNTPTNIKEQISNILGVNEVMGTGRY 306

Query: 88  LGLSSQIGKSKKEVFDNIKD 108
           LG+SS IG++KK +FD ++D
Sbjct: 307 LGMSSMIGRNKKAIFDYLRD 324

BLAST of Lcy03g000970.1 vs. NCBI nr
Match: XP_022157437.1 (uncharacterized protein LOC111024135 [Momordica charantia])

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-13
Identity = 52/109 (47.71%), Postives = 71/109 (65.14%), Query Frame = 0

Query: 5   TRRKVNRVRGPMDGRGRWIEDDAVVEI-----DCRSIKRLLYNYERA-SGQTINFEKSSF 64
           TR K+NR   P+     +  DD ++       +CRSIK +L +YE+A SGQ IN +KS F
Sbjct: 485 TRLKINRRCPPIS--HLFYADDCLLFFKASTGNCRSIKGILESYEKASSGQCINLDKSMF 544

Query: 65  MVSLNTNPDQVDKIKELLGVQYKESLGQYLGLSSQIGKSKKEVFDNIKD 108
           +VS NT    V  I++ L V + ESLGQYLGL SQ G++K++VF+NIKD
Sbjct: 545 IVSKNTKEQMVGVIRQELMVNHTESLGQYLGLPSQTGRNKRQVFNNIKD 591

BLAST of Lcy03g000970.1 vs. NCBI nr
Match: XP_012472310.1 (PREDICTED: uncharacterized protein LOC105789486 [Gossypium raimondii])

HSP 1 Score: 73.9 bits (180), Expect = 9.2e-10
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 0

Query: 35  SIKRLLYNYERASGQTINFEKSSFMVSLNTNPDQVDKIKELLGVQYKESLGQYLGLSSQI 94
           S+K++L  YE +SGQ +NFEKS+F  S NTN  +   + ++LGV+      QYLGL S +
Sbjct: 287 SLKQILQEYETSSGQRVNFEKSTFFFSTNTNESERSVVSQILGVRRANDFEQYLGLPSMV 346

Query: 95  GKSKKEVFDNIKD 108
           GK K+  F N+KD
Sbjct: 347 GKRKRLSFQNLKD 359

BLAST of Lcy03g000970.1 vs. NCBI nr
Match: XP_012087680.1 (uncharacterized protein LOC105646435 [Jatropha curcas])

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-09
Identity = 37/74 (50.00%), Postives = 50/74 (67.57%), Query Frame = 0

Query: 34  RSIKRLLYNYERASGQTINFEKSSFMVSLNTNPDQVDKIKELLGVQYKESLGQYLGLSSQ 93
           R++K +L  YE+ASGQ I+ +KSS   S NT   + D I   LGV+ K+SLG YLGL S 
Sbjct: 125 RTLKHILLAYEQASGQEISLQKSSITFSANTPASRRDLICNTLGVEEKDSLGCYLGLPSH 184

Query: 94  IGKSKKEVFDNIKD 108
           +G+ K+EVF  +KD
Sbjct: 185 VGRKKREVFGYLKD 198

BLAST of Lcy03g000970.1 vs. NCBI nr
Match: KAA3454975.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 71.6 bits (174), Expect = 4.5e-09
Identity = 34/74 (45.95%), Postives = 51/74 (68.92%), Query Frame = 0

Query: 34  RSIKRLLYNYERASGQTINFEKSSFMVSLNTNPDQVDKIKELLGVQYKESLGQYLGLSSQ 93
           R +K +L +YE+ SGQ +NF KS+   S NT+ +   +I+E+LG++   +L +YLGL + 
Sbjct: 669 RFLKEILKSYEQCSGQCVNFNKSTIFFSTNTSEEMKKEIEEVLGMRSATNLEKYLGLPNI 728

Query: 94  IGKSKKEVFDNIKD 108
           +GK KKE F NIKD
Sbjct: 729 VGKRKKESFQNIKD 742

BLAST of Lcy03g000970.1 vs. NCBI nr
Match: XP_019089129.1 (PREDICTED: uncharacterized protein LOC109127959 [Camelina sativa])

HSP 1 Score: 70.9 bits (172), Expect = 7.7e-09
Identity = 33/76 (43.42%), Postives = 50/76 (65.79%), Query Frame = 0

Query: 32  DCRSIKRLLYNYERASGQTINFEKSSFMVSLNTNPDQVDKIKELLGVQYKESLGQYLGLS 91
           +C +++R+L+ YERASG+ IN  KS+   S  T P+  ++IK  LG+Q +  LG+YLGL 
Sbjct: 556 NCNTLQRILHEYERASGKMINAAKSAITFSAKTTPETKNRIKSHLGIQREGGLGKYLGLP 615

Query: 92  SQIGKSKKEVFDNIKD 108
              G+ KK++F  I D
Sbjct: 616 ELFGRKKKDLFTAIVD 631

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DUG86.6e-1447.71uncharacterized protein LOC111024135 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A2N9GTH09.9e-1043.18Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30581 PE=4 SV=1[more]
A0A2N9ELM31.7e-0943.18Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3493 PE=4 SV=1[more]
A0A5B6UMS82.2e-0945.95Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_018051 PE=4 SV=1[more]
A0A2Z6N0293.8e-0943.75Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_226660 PE=4 SV... [more]
Match NameE-valueIdentityDescription
XP_022157437.11.4e-1347.71uncharacterized protein LOC111024135 [Momordica charantia][more]
XP_012472310.19.2e-1046.58PREDICTED: uncharacterized protein LOC105789486 [Gossypium raimondii][more]
XP_012087680.12.0e-0950.00uncharacterized protein LOC105646435 [Jatropha curcas][more]
KAA3454975.14.5e-0945.95reverse transcriptase [Gossypium australe][more]
XP_019089129.17.7e-0943.42PREDICTED: uncharacterized protein LOC109127959 [Camelina sativa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33116:SF45SUBFAMILY NOT NAMEDcoord: 31..107
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 31..107

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lcy03g000970Lcy03g000970gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy03g000970.1.exon1Lcy03g000970.1.exon1exon
Lcy03g000970.1.exon2Lcy03g000970.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy03g000970.1.cds1Lcy03g000970.1.cds1CDS
Lcy03g000970.1.cds2Lcy03g000970.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lcy03g000970.1Lcy03g000970.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016740 transferase activity