Lcy02g010160.1 (mRNA) Sponge gourd (P93075) v1

Overview
NameLcy02g010160.1
TypemRNA
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionBZIP domain-containing protein
LocationChr02: 27391279 .. 27392719 (+)
Sequence length345
RNA-Seq ExpressionLcy02g010160.1
SyntenyLcy02g010160.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGGACAAACCCCAAAGCCATTCTGGTGGATTTCTGCCCCCGTCGAGTCGTTACTCGAGTCTTTCACCAACTGCGAGTAGTTTCAATGGAAAATCTGAGGCAGCTTCATGTTCAATGTCGCTTCCTCCAATGACTCCGAGTGCTAATTCCGATTTGGGTCAATTCGGTCGTGGAATTTCCAGCGATTCCAATCGGTTCAGCCATGATGTTAGTCGGATGCCTGATAACCCGCCGAGAAATATGTTAGTCGGAGACATCGATCATCTTCTCACCGGCGGCGAGGAGGGCAAGGGGAAGGGGAAAGGGAAGAAGGGGAAAGGGAAAGGGAGGGGATCGATGGTTGGGGGAAGGTGAGAGAAGGAAAGATTTTTTTAATTTTTTTTTCTTTTCTTTTCTTATTAATTTATTATTTTAATTAAAAATTAAATTTTGAAAAAAAATAATATTTTATTATTAAACGTTGCCACGTCAGCACCGTTAAAAAAATTAACGGTGGAGGGACTAAATTGAACTATTTTCGGAACAGTAGGGACTTAATTGTTCGATTTTGAAACCTAGGGACCTATTGAAAACTGACCTGAAACATGAGGGACCAAAAAGGTATTTTACCCAAAAAAATACATTCTTTAAAAACACTTAAGCTAAAAGGTATTCCAAACGAATCCTAAGTTGTTTGGTTATAATACATATCTAGCACATCAATTAACACAAGTAGACTTTTTTTGAGTTCAGGGGGCTCGGGCCCTCCTGGACCCTACGTAGCTCCGCCACTGATATCATCTCTTAAAAACTATTTTCCATTTTATTTTTTAAATTAAGATCATGTGAAACTATCTCATCCCTAAGGTTTGGATTTCGTTTCATTTTGGTCCCTCCATCCAATTTTACGTTAATAATTAACGGATTGCTGACGTGGCACAAATTTTTTTATTAAAAAAATATTTTTTTAATTTTTGAAATAAAAATATAATAAATTAATTAAATTATTATTTTTATTATTTAATTTTTCTCCCCCTTCTTTGTCTTCGTCCCCTTCTTCTTCTTGCCCCTCTTCTTCCCATTCACCAACCGGAGCCGGTCGGCTACTGTCGACCACCGACCACCGACCGCCGACCACCGACGGCCGGCCGCCGGCGCCGGCGATTTTCTTTTTTTTTTTTATAATCTATTTCTTCTTCTCTTCTTTTTTTCCTTTCCCCTTCTCTTTTCCTCTCTTCCTTCCTTTCTTCGTCCTTTTCCCATACTTCTTTCTCCCTGCTTTCAGATCTAAAAAACCGAACGGCGGCGTGGTGTGGTGTTCCAGCTCGACGACCACGGCGACGAGGTGTTCAAGAACTCACGAACGCGATTCCAGCTCGACGACCACGGCGACGAGGTGTTCACGAACTCACGAACGCGATTCCAGCTCGACGACGGTGTTGGGTTCCAGATCTGA

mRNA sequence

ATGGAGAAGGACAAACCCCAAAGCCATTCTGGTGGATTTCTGCCCCCGTCGAGTCGTTACTCGAGTCTTTCACCAACTGCGAGTAGTTTCAATGGAAAATCTGAGGCAGCTTCATGTTCAATGTCGCTTCCTCCAATGACTCCGAGTGCTAATTCCGATTTGGGTCAATTCGGTCGTGGAATTTCCAGCGATTCCAATCGGTTCAGCCATGATCTCGACGACCACGGCGACGAGGTGTTCAAGAACTCACGAACGCGATTCCAGCTCGACGACCACGGCGACGAGGTGTTCACGAACTCACGAACGCGATTCCAGCTCGACGACGGTGTTGGGTTCCAGATCTGA

Coding sequence (CDS)

ATGGAGAAGGACAAACCCCAAAGCCATTCTGGTGGATTTCTGCCCCCGTCGAGTCGTTACTCGAGTCTTTCACCAACTGCGAGTAGTTTCAATGGAAAATCTGAGGCAGCTTCATGTTCAATGTCGCTTCCTCCAATGACTCCGAGTGCTAATTCCGATTTGGGTCAATTCGGTCGTGGAATTTCCAGCGATTCCAATCGGTTCAGCCATGATCTCGACGACCACGGCGACGAGGTGTTCAAGAACTCACGAACGCGATTCCAGCTCGACGACCACGGCGACGAGGTGTTCACGAACTCACGAACGCGATTCCAGCTCGACGACGGTGTTGGGTTCCAGATCTGA

Protein sequence

MEKDKPQSHSGGFLPPSSRYSSLSPTASSFNGKSEAASCSMSLPPMTPSANSDLGQFGRGISSDSNRFSHDLDDHGDEVFKNSRTRFQLDDHGDEVFTNSRTRFQLDDGVGFQI
Homology
[Close]
BLAST of Lcy02g010160.1 vs. ExPASy TrEMBL
Match: A0A6J1I867 (probable transcription factor PosF21 OS=Cucurbita maxima OX=3661 GN=LOC111470876 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.4e-25
Identity = 68/83 (81.93%), Postives = 71/83 (85.54%), Query Frame = 0 

Query: 1  MEKDKPQSHSGGFLPPSSRYSSLSPTASSFNGKSEAASCSMSLPPMTPSAN-SDLGQFGR 60
          MEKDKPQSHSGGFLPPSSRYSSLSPTASSFNGKSE ASCSMSLPPM PS N SD GQFGR
Sbjct: 1  MEKDKPQSHSGGFLPPSSRYSSLSPTASSFNGKSETASCSMSLPPMAPSPNSSDSGQFGR 60

Query: 61 GISSDSNRFSHDLDDHGDEVFKN 83
          G+SSDSNRFSHD+    D   +N
Sbjct: 61 GMSSDSNRFSHDISRMPDNPPRN 83

[Close]
BLAST of Lcy02g010160.1 vs. ExPASy TrEMBL
Match: A0A6J1F247 (probable transcription factor PosF21 OS=Cucurbita moschata OX=3662 GN=LOC111439092 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.4e-25
Identity = 68/83 (81.93%), Postives = 71/83 (85.54%), Query Frame = 0 

Query: 1  MEKDKPQSHSGGFLPPSSRYSSLSPTASSFNGKSEAASCSMSLPPMTPSAN-SDLGQFGR 60
          MEKDKPQSHSGGFLPPSSRYSSLSPTASSFNGKSE ASCSMSLPPM PS N SD GQFGR
Sbjct: 1  MEKDKPQSHSGGFLPPSSRYSSLSPTASSFNGKSETASCSMSLPPMAPSPNSSDSGQFGR 60

Query: 61 GISSDSNRFSHDLDDHGDEVFKN 83
          G+SSDSNRFSHD+    D   +N
Sbjct: 61 GMSSDSNRFSHDISRMPDNPPRN 83

[Close]
BLAST of Lcy02g010160.1 vs. ExPASy TrEMBL
Match: A0A6J1CBS0 (probable transcription factor PosF21 OS=Momordica charantia OX=3673 GN=LOC111009245 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.0e-25
Identity = 65/82 (79.27%), Postives = 69/82 (84.15%), Query Frame = 0 

Query: 1  MEKDKPQSHSGGFLPPSSRYSSLSPTASSFNGKSEAASCSMSLPPMTPSANSDLGQFGRG 60
          MEKDKPQSHSGGFLPPSSRYS LSPT SSFNGKSEAA+ SMS PPM PSANSD GQFGRG
Sbjct: 1  MEKDKPQSHSGGFLPPSSRYSGLSPTGSSFNGKSEAATSSMSFPPMAPSANSDSGQFGRG 60

Query: 61 ISSDSNRFSHDLDDHGDEVFKN 83
          +SSDSNRFSHD+    D   +N
Sbjct: 61 MSSDSNRFSHDISRMPDNPPRN 82

[Close]
BLAST of Lcy02g010160.1 vs. ExPASy TrEMBL
Match: A0A6J1GCF4 (probable transcription factor PosF21 OS=Cucurbita moschata OX=3662 GN=LOC111452907 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.5e-19
Identity = 54/72 (75.00%), Postives = 59/72 (81.94%), Query Frame = 0 

Query: 1  MEKDKPQSHSGGFLPPSSRYSSLSPTASSFNGKSEAASCSMSLPPMTPSANSDLGQFGRG 60
          MEKDKPQSHSGGFL PSSRY  LSPT SSFNGKSEA S SM+LPPM   ANSD  QF  G
Sbjct: 1  MEKDKPQSHSGGFLSPSSRYPGLSPTGSSFNGKSEATSSSMTLPPMASGANSDSSQFSHG 60

Query: 61 ISSDSNRFSHDL 73
          +S++SNRFSHD+
Sbjct: 61 MSTNSNRFSHDI 72

[Close]
BLAST of Lcy02g010160.1 vs. ExPASy TrEMBL
Match: A0A6J1I4F7 (probable transcription factor PosF21 OS=Cucurbita maxima OX=3661 GN=LOC111470877 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.3e-19
Identity = 53/72 (73.61%), Postives = 59/72 (81.94%), Query Frame = 0 

Query: 1  MEKDKPQSHSGGFLPPSSRYSSLSPTASSFNGKSEAASCSMSLPPMTPSANSDLGQFGRG 60
          MEKDKPQSHSGGFL PSSRY  LSPT SSFNGKSEA S SM+LPPM   ANSD  QF  G
Sbjct: 1  MEKDKPQSHSGGFLSPSSRYPGLSPTGSSFNGKSEATSSSMTLPPMASGANSDSSQFSHG 60

Query: 61 ISSDSNRFSHDL 73
          +S++SN+FSHD+
Sbjct: 61 MSTNSNQFSHDI 72

[Close]
BLAST of Lcy02g010160.1 vs. NCBI nr
Match: XP_022972295.1 (probable transcription factor PosF21 [Cucurbita maxima])

HSP 1 Score: 125.6 bits (314), Expect = 2.8e-25
Identity = 68/83 (81.93%), Postives = 71/83 (85.54%), Query Frame = 0 

Query: 1  MEKDKPQSHSGGFLPPSSRYSSLSPTASSFNGKSEAASCSMSLPPMTPSAN-SDLGQFGR 60
          MEKDKPQSHSGGFLPPSSRYSSLSPTASSFNGKSE ASCSMSLPPM PS N SD GQFGR
Sbjct: 1  MEKDKPQSHSGGFLPPSSRYSSLSPTASSFNGKSETASCSMSLPPMAPSPNSSDSGQFGR 60

Query: 61 GISSDSNRFSHDLDDHGDEVFKN 83
          G+SSDSNRFSHD+    D   +N
Sbjct: 61 GMSSDSNRFSHDISRMPDNPPRN 83

[Close]
BLAST of Lcy02g010160.1 vs. NCBI nr
Match: XP_022932578.1 (probable transcription factor PosF21 [Cucurbita moschata])

HSP 1 Score: 125.6 bits (314), Expect = 2.8e-25
Identity = 68/83 (81.93%), Postives = 71/83 (85.54%), Query Frame = 0 

Query: 1  MEKDKPQSHSGGFLPPSSRYSSLSPTASSFNGKSEAASCSMSLPPMTPSAN-SDLGQFGR 60
          MEKDKPQSHSGGFLPPSSRYSSLSPTASSFNGKSE ASCSMSLPPM PS N SD GQFGR
Sbjct: 1  MEKDKPQSHSGGFLPPSSRYSSLSPTASSFNGKSETASCSMSLPPMAPSPNSSDSGQFGR 60

Query: 61 GISSDSNRFSHDLDDHGDEVFKN 83
          G+SSDSNRFSHD+    D   +N
Sbjct: 61 GMSSDSNRFSHDISRMPDNPPRN 83

[Close]
BLAST of Lcy02g010160.1 vs. NCBI nr
Match: KAG6597620.1 (putative transcription factor PosF21, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029061.1 putative transcription factor PosF21, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125.6 bits (314), Expect = 2.8e-25
Identity = 68/83 (81.93%), Postives = 71/83 (85.54%), Query Frame = 0 

Query: 1  MEKDKPQSHSGGFLPPSSRYSSLSPTASSFNGKSEAASCSMSLPPMTPSAN-SDLGQFGR 60
          MEKDKPQSHSGGFLPPSSRYSSLSPTASSFNGKSE ASCSMSLPPM PS N SD GQFGR
Sbjct: 1  MEKDKPQSHSGGFLPPSSRYSSLSPTASSFNGKSETASCSMSLPPMAPSPNSSDSGQFGR 60

Query: 61 GISSDSNRFSHDLDDHGDEVFKN 83
          G+SSDSNRFSHD+    D   +N
Sbjct: 61 GMSSDSNRFSHDISRMPDNPPRN 83

[Close]
BLAST of Lcy02g010160.1 vs. NCBI nr
Match: XP_022137958.1 (probable transcription factor PosF21 [Momordica charantia])

HSP 1 Score: 124.0 bits (310), Expect = 8.2e-25
Identity = 65/82 (79.27%), Postives = 69/82 (84.15%), Query Frame = 0 

Query: 1  MEKDKPQSHSGGFLPPSSRYSSLSPTASSFNGKSEAASCSMSLPPMTPSANSDLGQFGRG 60
          MEKDKPQSHSGGFLPPSSRYS LSPT SSFNGKSEAA+ SMS PPM PSANSD GQFGRG
Sbjct: 1  MEKDKPQSHSGGFLPPSSRYSGLSPTGSSFNGKSEAATSSMSFPPMAPSANSDSGQFGRG 60

Query: 61 ISSDSNRFSHDLDDHGDEVFKN 83
          +SSDSNRFSHD+    D   +N
Sbjct: 61 MSSDSNRFSHDISRMPDNPPRN 82

[Close]
BLAST of Lcy02g010160.1 vs. NCBI nr
Match: XP_023540098.1 (probable transcription factor PosF21 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 123.2 bits (308), Expect = 1.4e-24
Identity = 67/83 (80.72%), Postives = 70/83 (84.34%), Query Frame = 0 

Query: 1  MEKDKPQSHSGGFLPPSSRYSSLSPTASSFNGKSEAASCSMSLPPMTPSAN-SDLGQFGR 60
          MEKDKPQSHS GFLPPSSRYSSLSPTASSFNGKSE ASCSMSLPPM PS N SD GQFGR
Sbjct: 1  MEKDKPQSHSAGFLPPSSRYSSLSPTASSFNGKSETASCSMSLPPMAPSPNSSDSGQFGR 60

Query: 61 GISSDSNRFSHDLDDHGDEVFKN 83
          G+SSDSNRFSHD+    D   +N
Sbjct: 61 GMSSDSNRFSHDISRMPDNPPRN 83

[Close]
BLAST of Lcy02g010160.1 vs. TAIR 10
Match: AT1G06070.1 (Basic-leucine zipper (bZIP) transcription factor family protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.1e-06
Identity = 36/81 (44.44%), Postives = 44/81 (54.32%), Query Frame = 0 

Query: 2  EKDKPQSHSGGFLPPSSRYSSLSPTASSFNGKSEAASCSMSLPPMTPSANSDLGQFGRGI 61
          EK      SGG  PPS RYS+ SP  SSF  K+E+     S PP+TPS ++         
Sbjct: 4  EKSPAPPPSGGLPPPSGRYSAFSPNGSSFAMKAES-----SFPPLTPSGSN--------- 63

Query: 62 SSDSNRFSHDLDDHGDEVFKN 83
          SSD+NRFSHD+    D   KN
Sbjct: 64 SSDANRFSHDISRMPDNPPKN 70

The following BLAST results are available for this feature:
BLAST of Lcy02g010160.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy02g010160.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I8671.4e-2581.93probable transcription factor PosF21 OS=Cucurbita maxima OX=3661 GN=LOC111470876... [more]
A0A6J1F2471.4e-2581.93probable transcription factor PosF21 OS=Cucurbita moschata OX=3662 GN=LOC1114390... [more]
A0A6J1CBS04.0e-2579.27probable transcription factor PosF21 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A6J1GCF41.5e-1975.00probable transcription factor PosF21 OS=Cucurbita moschata OX=3662 GN=LOC1114529... [more]
A0A6J1I4F74.3e-1973.61probable transcription factor PosF21 OS=Cucurbita maxima OX=3661 GN=LOC111470877... [more]
BLAST of Lcy02g010160.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022972295.12.8e-2581.93probable transcription factor PosF21 [Cucurbita maxima][more]
XP_022932578.12.8e-2581.93probable transcription factor PosF21 [Cucurbita moschata][more]
KAG6597620.12.8e-2581.93putative transcription factor PosF21, partial [Cucurbita argyrosperma subsp. sor... [more]
XP_022137958.18.2e-2579.27probable transcription factor PosF21 [Momordica charantia][more]
XP_023540098.11.4e-2480.72probable transcription factor PosF21 [Cucurbita pepo subsp. pepo][more]
BLAST of Lcy02g010160.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G06070.11.1e-0644.44Basic-leucine zipper (bZIP) transcription factor family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..65
NoneNo IPR availablePANTHERPTHR13690:SF128TRANSCRIPTION FACTOR POSF21-RELATEDcoord: 7..84
NoneNo IPR availablePANTHERPTHR13690TRANSCRIPTION FACTOR POSF21-RELATEDcoord: 7..84

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lcy02g010160Lcy02g010160gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy02g010160.1.exon1Lcy02g010160.1.exon1exon
Lcy02g010160.1.exon2Lcy02g010160.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy02g010160.1.cds1Lcy02g010160.1.cds1CDS
Lcy02g010160.1.cds2Lcy02g010160.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lcy02g010160.1Lcy02g010160.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 DNA-binding transcription factor activity