Lcy02g004870.1 (mRNA) Sponge gourd (P93075) v1

Overview
NameLcy02g004870.1
TypemRNA
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
LocationChr02: 6397917 .. 6399926 (-)
Sequence length852
RNA-Seq ExpressionLcy02g004870.1
SyntenyLcy02g004870.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTGCGTTGAATCAGTGAGTTTCCAAGTCATTCTTAATGGACCACCTCACTCAACCTTCACACCAAAGAGAGGTCTTCGTTAAGGCGATCCTCTCTCCCCATACCTTTTCCTTTTGTGTACTGAGGGCCTTTCAAATCTCCTCAACAATGTAGAGGAAAACAGGGAGCTCACAGGTTTGCACATTAATAAGTACTGTCCTTCTCTATCTCACTTGTTTTTTGCAGATGACAGTCTCTTGTTTTTTAAGGCCACTAACAAAGATTGCAGGACTATTCAAAGAATCCTAGATATATATGAGAAGGCTTCGGATCAAATAGTGAATTTTGAGAAGTCAATGTTCATGGTCAGCCCTAACACAAGTCAGGTAATAAAAGATTCCATTAAACATATTTTGAGAGTATCTCATACAGAATCACTAGGACAATATCTTGGATTACCCTCTCAAAATGCTCGAAATAAGGAGGAAATCTTCAACAACATTAAAGATCGAGTGTGACAGACGTTTCAGGGATGGAAAGAGAAGTTCTTTTCGACTGTTGGAAGGGAAGTTCTCATTAAATCTGTGGCCCAAGCCATTCTGAATTATGCTATGAGTTGTTTCAAATTTCCTTCAAATCTCTGTAAAGATCTTAATTCTTTCTGTGCTAGATTTTGGTGGGGCAACTTGAAGGACGAACACAATATTCACTGGCGGAGTTGAAAAAGTTTTGCATAAATAAGCTTCATGAAGGTATGGGCTTTAGGGATCTTGTTGTCTTCAATCAAGCCATGCTGGAAAAACATAGTTGGAGGTTGATTAAATATCCGGATAGTCTGTCAGCCAAGGTGCTCTGAGGGCGATATTTCAAAACGGAGCACTACTTAAAAGCAACACTTGGTCATAACCCTTCATACACATGGAGGAGCATCTTATGGGGTCGTGAATTGTTCAAAAAAGGCTACAGATGGCGGATAGGAAATGGTTTGAATATTGAAGCATCCTCTGAACCATGGATTCCAAATGAGGGATTGTGTAAACCAGTGAAAATCCACCCAGATATAGAAAACTTCACAGTTGCACACCTCATTAACAGGAATGACATGTGGAATAATGAGGAGTTGGTCCGTGGCTCCTTTATGCAAGATGAAGCTAATAAGATCCTAAATATCCCCTATTAGTAGGAACTTCAGGGAGGATGAAGTAATATGGAATAATGAGCCTAAAGGAATTTTTTCTGTGAGAAGAAGCACCTATAGGCTGGGAATTCAGAATAGGCAAAGTGATGAATCATCTACATCTAGCTATGACCAGCAAGAACAACTATGGAAAAGCTTTTGGAAAGCCCAAGTTCCTTCCAAAATTAAAATTTGCGACTAGCATGTTTATAAAGATATTCATCCTACTCGTTCTAATTTGATTAAACGGGGGATGGATATTAACCCAACTTGTTTTCTGTGCAGGAACAAACTGGAGACTGCCACACCATCTTTTTTGGGAGTGTAAATGCACAAAACGATTATGGCCTAAATATTTTTCATCTATTGAGTTAGTTCCTTTGAATGACAGGAAAGGACGGAACACAACAGACTATTGCGATTGGCTTTAGAGGAGATCAAGAGAAGGAAGCATGAACAAGAGCAACTTAATAAAGAGTCTGATAATAGCTGGCAGATATGGAGCTTTCGGAATGCGGTCTATCACAACAATCAACAACCAGACTCAGATAAATTACAAATCCTAGTCGAAAAGTATATGGAAGAGTTATCTAAGGAGGAAAACACTGACCTGGTAAATACCTTCCCCAATGGAAGGCTGATGCAATCGTCCTCTAGACGGATCTCGCCTCCTCACAGAATGTGGAAGATGAGTTGCGATGCTTCGTGGAACAAGGAGAAAAACCAAGGTGGAATTGGTTGGGTTCTCAGGGATTGGAATGGATCACCGCAGATAGCAGGATGTCGATGTATCAAACGGCCATGGCGAATTGAATGGCTTGAAGCTCTAGCGATTAGTGAGGGACTGTGA

mRNA sequence

ATGGGTTGCGTTGAATCAGTGAGTTTCCAAGTCATTCTTAATGGACCACCTCACTCAACCTTCACACCAAAGAGAGATGACAGTCTCTTGTTTTTTAAGGCCACTAACAAAGATTGCAGGACTATTCAAAGAATCCTAGATATATATGAGAAGGCTTCGGATCAAATAGTGAATTTTGAGAAGTCAATGTTCATGGTCAGCCCTAACACAAGTCAGATTTTGGTGGGGCAACTTGAAGGACGAACACAATATTCACTGGCGGAGTTGAAAAAGTTTTGCATAAATAAGCTTCATGAAGGTATGGGCTTTAGGGATCTTGTTGTCTTCAATCAAGCCATGCTGGAAAAACATAGTTGGAGGTTGATTAAATATCCGGATAGTCTGTCAGCCAAGGAAAGGACGGAACACAACAGACTATTGCGATTGGCTTTAGAGGAGATCAAGAGAAGGAAGCATGAACAAGAGCAACTTAATAAAGAGTCTGATAATAGCTGGCAGATATGGAGCTTTCGGAATGCGGTCTATCACAACAATCAACAACCAGACTCAGATAAATTACAAATCCTAGTCGAAAAGTATATGGAAGAGTTATCTAAGGAGGAAAACACTGACCTGGTAAATACCTTCCCCAATGGAAGGCTGATGCAATCGTCCTCTAGACGGATCTCGCCTCCTCACAGAATGTGGAAGATGAGTTGCGATGCTTCGTGGAACAAGGAGAAAAACCAAGGTGGAATTGGTTGGGTTCTCAGGGATTGGAATGGATCACCGCAGATAGCAGGATGTCGATGTATCAAACGGCCATGGCGAATTGAATGGCTTGAAGCTCTAGCGATTAGTGAGGGACTGTGA

Coding sequence (CDS)

ATGGGTTGCGTTGAATCAGTGAGTTTCCAAGTCATTCTTAATGGACCACCTCACTCAACCTTCACACCAAAGAGAGATGACAGTCTCTTGTTTTTTAAGGCCACTAACAAAGATTGCAGGACTATTCAAAGAATCCTAGATATATATGAGAAGGCTTCGGATCAAATAGTGAATTTTGAGAAGTCAATGTTCATGGTCAGCCCTAACACAAGTCAGATTTTGGTGGGGCAACTTGAAGGACGAACACAATATTCACTGGCGGAGTTGAAAAAGTTTTGCATAAATAAGCTTCATGAAGGTATGGGCTTTAGGGATCTTGTTGTCTTCAATCAAGCCATGCTGGAAAAACATAGTTGGAGGTTGATTAAATATCCGGATAGTCTGTCAGCCAAGGAAAGGACGGAACACAACAGACTATTGCGATTGGCTTTAGAGGAGATCAAGAGAAGGAAGCATGAACAAGAGCAACTTAATAAAGAGTCTGATAATAGCTGGCAGATATGGAGCTTTCGGAATGCGGTCTATCACAACAATCAACAACCAGACTCAGATAAATTACAAATCCTAGTCGAAAAGTATATGGAAGAGTTATCTAAGGAGGAAAACACTGACCTGGTAAATACCTTCCCCAATGGAAGGCTGATGCAATCGTCCTCTAGACGGATCTCGCCTCCTCACAGAATGTGGAAGATGAGTTGCGATGCTTCGTGGAACAAGGAGAAAAACCAAGGTGGAATTGGTTGGGTTCTCAGGGATTGGAATGGATCACCGCAGATAGCAGGATGTCGATGTATCAAACGGCCATGGCGAATTGAATGGCTTGAAGCTCTAGCGATTAGTGAGGGACTGTGA

Protein sequence

MGCVESVSFQVILNGPPHSTFTPKRDDSLLFFKATNKDCRTIQRILDIYEKASDQIVNFEKSMFMVSPNTSQILVGQLEGRTQYSLAELKKFCINKLHEGMGFRDLVVFNQAMLEKHSWRLIKYPDSLSAKERTEHNRLLRLALEEIKRRKHEQEQLNKESDNSWQIWSFRNAVYHNNQQPDSDKLQILVEKYMEELSKEENTDLVNTFPNGRLMQSSSRRISPPHRMWKMSCDASWNKEKNQGGIGWVLRDWNGSPQIAGCRCIKRPWRIEWLEALAISEGL
Homology
BLAST of Lcy02g004870.1 vs. ExPASy TrEMBL
Match: A0A5B6U8V5 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_009683 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.6e-13
Identity = 52/131 (39.69%), Postives = 69/131 (52.67%), Query Frame = 0

Query: 1   MGCVESVSFQVILNGPPHSTFTPKRDDSLLFFKATNKDCRTIQRILDIYEKASDQIVNFE 60
           M CV SVS+ VI+N                F KAT +D  ++++IL  YEK S+Q VNFE
Sbjct: 342 MKCVSSVSYSVIINE---------------FAKATERDAISLKQILMEYEKNSEQCVNFE 401

Query: 61  KSMFMVSPNTSQILVGQLEGRTQYSLAELKKFCINKLHEGMGFRDLVVFNQAMLEKHSWR 120
           KS    S NT                 E ++  +++ + G+GFR+L  FN A+L K  WR
Sbjct: 402 KSTVFFSTNTQ----------------ERERMAVSQENGGIGFRNLANFNVALLAKQDWR 441

Query: 121 LIKYPDSLSAK 132
           LI YPDSL AK
Sbjct: 462 LINYPDSLLAK 441

BLAST of Lcy02g004870.1 vs. ExPASy TrEMBL
Match: A0A803QMZ3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.3e-12
Identity = 57/196 (29.08%), Postives = 82/196 (41.84%), Query Frame = 0

Query: 1   MGCVESVSFQVILNGPPHSTFTPKR----DDSLLFFKATNKDCRTIQRILDIYEKASDQI 60
           MGC+ S SF  +LNG       P R    DDSLL  +A N   R I+++LDIY KAS Q+
Sbjct: 157 MGCLNSTSFSFMLNGEEVGFVQPTRGLRQDDSLLLCEAANNLARAIKKVLDIYNKASGQL 216

Query: 61  VNFEKSMFMVSPNTS--------------------------------------------- 120
           +N  KS+   SPNTS                                             
Sbjct: 217 LNTTKSVMSFSPNTSPATKDYFQQTLGMPISECHERYLGLPAFSECDKKEMFSDVKERIW 276

Query: 121 ----------------QILVGQLEGRTQYSLAELKKFCINKLHEGMGFRDLVVFNQAMLE 132
                           ++L+  ++G ++      K  C +K   GMGFR  V FN+A+L 
Sbjct: 277 QKLHAWNEKLFSVGGKEVLLKAVDG-SKIHWRSWKLLCKSKFESGMGFRSFVHFNKALLA 336

BLAST of Lcy02g004870.1 vs. ExPASy TrEMBL
Match: A0A2Z6N1B1 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_223860 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 9.6e-12
Identity = 51/161 (31.68%), Postives = 74/161 (45.96%), Query Frame = 0

Query: 1   MGCVESVSFQVILNGPPHSTFTP----KRDDSLLFFKATNKDCRTIQRILDIYEKASDQI 60
           M CV +V + +I+NG       P    ++DD   FFKAT  +   ++ +L +YE  S Q 
Sbjct: 121 MLCVVTVDYSIIVNGHKVGPIVPGRGLRQDDCFPFFKATVNEAAVVKNVLSVYETTSGQA 180

Query: 61  VNFEKSMFMVSPN---------TSQILVGQLEGRTQYSLAEL-----------------K 120
           +N +KS F  S N          S + V Q+ GR +  L                    +
Sbjct: 181 INLQKSEFYCSRNVSAETREAIASHLGVTQVLGRIEKMLNSFWWDHSGNNGRGIHRLSWE 240

Query: 121 KFCINKLHEGMGFRDLVVFNQAMLEKHSWRLIKYPDSLSAK 132
              ++K H+GMGF+ L  FN AML K +W L+  PD L  K
Sbjct: 241 HLSVSKDHDGMGFKSLKAFNIAMLGKQAWNLVTKPDCLITK 281

BLAST of Lcy02g004870.1 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.2e-11
Identity = 45/140 (32.14%), Postives = 71/140 (50.71%), Query Frame = 0

Query: 151 KHEQEQLNKESDNSWQIWSFRNAVYHNNQQPDSDKLQILVEKYMEELSKEENTDLVNTFP 210
           K  +E+  +    +WQIW  RN        P++  +Q+ +++Y+   S   NT+L     
Sbjct: 3   KAGEEERRRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIIN-SAGRNTNLKGKST 62

Query: 211 N------GRLMQSSSRRISPP-HRMWKMSCDASWNKEKNQGGIGWVLRDWNGSPQIAGCR 270
           N       R+  ++  +  PP    WK++ +A+W  + N GGIGW+LRD  G    A CR
Sbjct: 63  NKDLHLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCR 122

Query: 271 CIKRPWRIEWLEALAISEGL 284
            I+    I +LE +AI EGL
Sbjct: 123 IIRAERNITYLEVMAICEGL 141

BLAST of Lcy02g004870.1 vs. ExPASy TrEMBL
Match: A0A2N9IXK4 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57484 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-10
Identity = 61/199 (30.65%), Postives = 82/199 (41.21%), Query Frame = 0

Query: 3    CVESVSFQVILNGPPHSTFTPKR------------------DDSLLFFKATNKDCRTIQR 62
            C+ +VSF +++NG P   F P R                  DDSLLF +AT  DC  I +
Sbjct: 818  CISTVSFSILINGAPKGFFRPSRGLRQGDPLSPYLFLLCTEDDSLLFCRATRDDCEAILQ 877

Query: 63   ILDIYEKASDQIVNFEKSMFMVSPNT------------------SQILV-GQLEGRTQYS 122
            IL IYE AS Q VN +K+    S +T                   +IL+   ++    YS
Sbjct: 878  ILSIYEAASGQQVNRDKTKLFFSKSTPTSVTTELINLLGVPAIQEEILIKAVVQAIPAYS 937

Query: 123  LA--------------ELKKF-------------------CINKLHEGMGFRDLVVFNQA 132
            ++               ++KF                   C  K   GMGFRDL +FN A
Sbjct: 938  MSCFKLPVTLCHEIEVLIRKFWWSNGSDDKKIHWVNWETLCQAKRIGGMGFRDLKIFNDA 997

BLAST of Lcy02g004870.1 vs. NCBI nr
Match: XP_020889487.1 (uncharacterized protein LOC110230528 isoform X1 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 93.6 bits (231), Expect = 3.0e-15
Identity = 50/135 (37.04%), Postives = 76/135 (56.30%), Query Frame = 0

Query: 1   MGCVESVSFQVILNGPPHSTFTPKR----DDSLLFFKATNKDCRTIQRILDIYEKASDQI 60
           M CV +V++ V++NG P     P R    DDSLLF +A  ++C  I ++L +Y  AS Q 
Sbjct: 123 MKCVTTVTYSVLINGSPSKKIIPSRGLRQDDSLLFCQANEQECHQILQLLQVYATASGQH 182

Query: 61  VNFEKSMFMVSPNTSQILVGQLEGRTQYSLAELKKFCINKLHEGMGFRDLVVFNQAMLEK 120
           VNF+KS  + +    +     ++ + +       K  + K + GMGFRDL  FN A+L K
Sbjct: 183 VNFQKSAILFA-QIRRFRWSSIKEKQKIPWIAWTKLTMMKQYRGMGFRDLSHFNTALLAK 242

Query: 121 HSWRLIKYPDSLSAK 132
            SWR++K P SL ++
Sbjct: 243 QSWRMLKEPHSLLSR 256

BLAST of Lcy02g004870.1 vs. NCBI nr
Match: XP_020889488.1 (uncharacterized protein LOC110230528 isoform X2 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 93.6 bits (231), Expect = 3.0e-15
Identity = 50/135 (37.04%), Postives = 76/135 (56.30%), Query Frame = 0

Query: 1   MGCVESVSFQVILNGPPHSTFTPKR----DDSLLFFKATNKDCRTIQRILDIYEKASDQI 60
           M CV +V++ V++NG P     P R    DDSLLF +A  ++C  I ++L +Y  AS Q 
Sbjct: 123 MKCVTTVTYSVLINGSPSKKIIPSRGLRQDDSLLFCQANEQECHQILQLLQVYATASGQH 182

Query: 61  VNFEKSMFMVSPNTSQILVGQLEGRTQYSLAELKKFCINKLHEGMGFRDLVVFNQAMLEK 120
           VNF+KS  + +    +     ++ + +       K  + K + GMGFRDL  FN A+L K
Sbjct: 183 VNFQKSAILFA-QIRRFRWSSIKEKQKIPWIAWTKLTMMKQYRGMGFRDLSHFNTALLAK 242

Query: 121 HSWRLIKYPDSLSAK 132
            SWR++K P SL ++
Sbjct: 243 QSWRMLKEPHSLLSR 256

BLAST of Lcy02g004870.1 vs. NCBI nr
Match: XP_020889489.1 (uncharacterized protein LOC110230528 isoform X3 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 93.6 bits (231), Expect = 3.0e-15
Identity = 50/135 (37.04%), Postives = 76/135 (56.30%), Query Frame = 0

Query: 1   MGCVESVSFQVILNGPPHSTFTPKR----DDSLLFFKATNKDCRTIQRILDIYEKASDQI 60
           M CV +V++ V++NG P     P R    DDSLLF +A  ++C  I ++L +Y  AS Q 
Sbjct: 54  MKCVTTVTYSVLINGSPSKKIIPSRGLRQDDSLLFCQANEQECHQILQLLQVYATASGQH 113

Query: 61  VNFEKSMFMVSPNTSQILVGQLEGRTQYSLAELKKFCINKLHEGMGFRDLVVFNQAMLEK 120
           VNF+KS  + +    +     ++ + +       K  + K + GMGFRDL  FN A+L K
Sbjct: 114 VNFQKSAILFA-QIRRFRWSSIKEKQKIPWIAWTKLTMMKQYRGMGFRDLSHFNTALLAK 173

Query: 121 HSWRLIKYPDSLSAK 132
            SWR++K P SL ++
Sbjct: 174 QSWRMLKEPHSLLSR 187

BLAST of Lcy02g004870.1 vs. NCBI nr
Match: XP_020874115.1 (uncharacterized protein LOC110226518 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 92.0 bits (227), Expect = 8.6e-15
Identity = 49/135 (36.30%), Postives = 75/135 (55.56%), Query Frame = 0

Query: 1   MGCVESVSFQVILNGPPHSTFTPKR----DDSLLFFKATNKDCRTIQRILDIYEKASDQI 60
           M CV +V++ V++NG P     P R    DDSLLF +A  ++C  + ++L  Y  AS Q 
Sbjct: 54  MKCVTTVTYSVLINGSPSKKIIPSRGLRQDDSLLFCQANEQECHQVLQLLQTYATASGQH 113

Query: 61  VNFEKSMFMVSPNTSQILVGQLEGRTQYSLAELKKFCINKLHEGMGFRDLVVFNQAMLEK 120
           +NF+KS  + +    +     ++ + +       K  + K + GMGFRDL  FN A+L K
Sbjct: 114 INFQKSAILFA-QIRRFWWSSIKDKKKIPWVAWSKLTMMKQYGGMGFRDLSHFNIALLAK 173

Query: 121 HSWRLIKYPDSLSAK 132
            SWRL+K P SL ++
Sbjct: 174 QSWRLLKEPQSLLSR 187

BLAST of Lcy02g004870.1 vs. NCBI nr
Match: XP_021603893.1 (uncharacterized protein LOC110608920 [Manihot esculenta])

HSP 1 Score: 92.0 bits (227), Expect = 8.6e-15
Identity = 51/133 (38.35%), Postives = 69/133 (51.88%), Query Frame = 0

Query: 3   CVESVSFQVILNGPPHSTFTPKRDDSLLFFKATNKDCRTIQRILDIYEKASDQIVNFEKS 62
           C   VS+ +  NG       P RDDSLLFF A  K+  +I+ IL+ Y  AS Q+VNF KS
Sbjct: 170 CFSEVSYNINFNGDWIGPIVPGRDDSLLFFNARLKEVDSIKSILNTYAAASGQVVNFNKS 229

Query: 63  MFMVSPNTSQ-------ILVGQLEGRTQYSLAELKKFCINKLHEGMGFRDLVVFNQAMLE 122
               SPN          ++ G+ EGR   +    +K C  K   GMGF+D   FN ++L 
Sbjct: 230 SIFFSPNVVSSKNGQWLLVGGKREGRRGINWLAWEKMCSRKKEGGMGFQDFRSFNLSLLG 289

Query: 123 KHSWRLIKYPDSL 129
           K  WR +  P++L
Sbjct: 290 KQLWRFLTNPNTL 302

BLAST of Lcy02g004870.1 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 54.3 bits (129), Expect = 1.8e-07
Identity = 30/104 (28.85%), Postives = 53/104 (50.96%), Query Frame = 0

Query: 165 WQIWSFRNAVYHNNQQPDSDKLQILVEKYMEELSKEENTDLVNTFPNGRLMQSSSRRISP 224
           W++W  RN +    ++ ++ ++    E  +EE       +   T P  ++ +SS  R  P
Sbjct: 365 WRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKP--QVNRSSCGRWRP 424

Query: 225 PHRMW-KMSCDASWNKEKNQGGIGWVLRDWNGSPQIAGCRCIKR 268
           P   W K + DA+WN++  + GIGWVLR+  G  +  G R + +
Sbjct: 425 PPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPK 466


HSP 2 Score: 41.2 bits (95), Expect = 1.6e-03
Identity = 17/36 (47.22%), Postives = 24/36 (66.67%), Query Frame = 0

Query: 96  KLHEGMGFRDLVVFNQAMLEKHSWRLIKYPDSLSAK 132
           K   G+GF+D+  FN A+L K  WR++  P+SL AK
Sbjct: 51  KAEGGIGFKDIEAFNLALLGKQMWRMLSRPESLMAK 86

BLAST of Lcy02g004870.1 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 8.6e-05
Identity = 27/103 (26.21%), Postives = 49/103 (47.57%), Query Frame = 0

Query: 165 WQIWSFRNAVYHNNQQPDSDKLQILVEKYMEELSKEENTDLVNTFPNGRLMQSSSRRISP 224
           W++W  RN +    ++ D+ ++     +  EE S     +   + P      S   + +P
Sbjct: 82  WRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGPQVERNLSVQWK-AP 141

Query: 225 PHRMWKMSCDASWNKEKNQGGIGWVLRDWNGSPQIAGCRCIKR 268
           P++  K + DA+W  E  + GIGW+LR+ +G     G R + R
Sbjct: 142 PYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPR 183

BLAST of Lcy02g004870.1 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 42.0 bits (97), Expect = 9.5e-04
Identity = 22/54 (40.74%), Postives = 34/54 (62.96%), Query Frame = 0

Query: 79  EGRTQYSLAELKKFCINKLHE-GMGFRDLVVFNQAMLEKHSWRLIKYPDSLSAK 132
           E + + S    +K C +K  + G+GFRDL  FNQA+L K S+R+I  P +L ++
Sbjct: 34  ENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQALLAKQSFRIIHQPHTLLSR 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5B6U8V56.6e-1339.69Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_009683 PE=4 SV=1[more]
A0A803QMZ37.3e-1229.08Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A2Z6N1B19.6e-1231.68Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_223860 PE=4 SV... [more]
A0A6J1CP266.2e-1132.14uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A2N9IXK41.1e-1030.65RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57484 ... [more]
Match NameE-valueIdentityDescription
XP_020889487.13.0e-1537.04uncharacterized protein LOC110230528 isoform X1 [Arabidopsis lyrata subsp. lyrat... [more]
XP_020889488.13.0e-1537.04uncharacterized protein LOC110230528 isoform X2 [Arabidopsis lyrata subsp. lyrat... [more]
XP_020889489.13.0e-1537.04uncharacterized protein LOC110230528 isoform X3 [Arabidopsis lyrata subsp. lyrat... [more]
XP_020874115.18.6e-1536.30uncharacterized protein LOC110226518 [Arabidopsis lyrata subsp. lyrata][more]
XP_021603893.18.6e-1538.35uncharacterized protein LOC110608920 [Manihot esculenta][more]
Match NameE-valueIdentityDescription
AT4G29090.11.8e-0728.85Ribonuclease H-like superfamily protein [more]
AT2G34320.18.6e-0526.21Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
ATMG00310.19.5e-0440.74RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 183..203
NoneNo IPR availableCOILSCoilCoilcoord: 137..164
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 233..283
e-value: 8.1E-6
score: 25.7

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lcy02g004870Lcy02g004870gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy02g004870.1.exon4Lcy02g004870.1.exon4exon
Lcy02g004870.1.exon3Lcy02g004870.1.exon3exon
Lcy02g004870.1.exon2Lcy02g004870.1.exon2exon
Lcy02g004870.1.exon1Lcy02g004870.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy02g004870.1.cds4Lcy02g004870.1.cds4CDS
Lcy02g004870.1.cds3Lcy02g004870.1.cds3CDS
Lcy02g004870.1.cds2Lcy02g004870.1.cds2CDS
Lcy02g004870.1.cds1Lcy02g004870.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lcy02g004870.1Lcy02g004870.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity