Lcy02g004870.1 (mRNA) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTTGCGTTGAATCAGTGAGTTTCCAAGTCATTCTTAATGGACCACCTCACTCAACCTTCACACCAAAGAGAGGTCTTCGTTAAGGCGATCCTCTCTCCCCATACCTTTTCCTTTTGTGTACTGAGGGCCTTTCAAATCTCCTCAACAATGTAGAGGAAAACAGGGAGCTCACAGGTTTGCACATTAATAAGTACTGTCCTTCTCTATCTCACTTGTTTTTTGCAGATGACAGTCTCTTGTTTTTTAAGGCCACTAACAAAGATTGCAGGACTATTCAAAGAATCCTAGATATATATGAGAAGGCTTCGGATCAAATAGTGAATTTTGAGAAGTCAATGTTCATGGTCAGCCCTAACACAAGTCAGGTAATAAAAGATTCCATTAAACATATTTTGAGAGTATCTCATACAGAATCACTAGGACAATATCTTGGATTACCCTCTCAAAATGCTCGAAATAAGGAGGAAATCTTCAACAACATTAAAGATCGAGTGTGACAGACGTTTCAGGGATGGAAAGAGAAGTTCTTTTCGACTGTTGGAAGGGAAGTTCTCATTAAATCTGTGGCCCAAGCCATTCTGAATTATGCTATGAGTTGTTTCAAATTTCCTTCAAATCTCTGTAAAGATCTTAATTCTTTCTGTGCTAGATTTTGGTGGGGCAACTTGAAGGACGAACACAATATTCACTGGCGGAGTTGAAAAAGTTTTGCATAAATAAGCTTCATGAAGGTATGGGCTTTAGGGATCTTGTTGTCTTCAATCAAGCCATGCTGGAAAAACATAGTTGGAGGTTGATTAAATATCCGGATAGTCTGTCAGCCAAGGTGCTCTGAGGGCGATATTTCAAAACGGAGCACTACTTAAAAGCAACACTTGGTCATAACCCTTCATACACATGGAGGAGCATCTTATGGGGTCGTGAATTGTTCAAAAAAGGCTACAGATGGCGGATAGGAAATGGTTTGAATATTGAAGCATCCTCTGAACCATGGATTCCAAATGAGGGATTGTGTAAACCAGTGAAAATCCACCCAGATATAGAAAACTTCACAGTTGCACACCTCATTAACAGGAATGACATGTGGAATAATGAGGAGTTGGTCCGTGGCTCCTTTATGCAAGATGAAGCTAATAAGATCCTAAATATCCCCTATTAGTAGGAACTTCAGGGAGGATGAAGTAATATGGAATAATGAGCCTAAAGGAATTTTTTCTGTGAGAAGAAGCACCTATAGGCTGGGAATTCAGAATAGGCAAAGTGATGAATCATCTACATCTAGCTATGACCAGCAAGAACAACTATGGAAAAGCTTTTGGAAAGCCCAAGTTCCTTCCAAAATTAAAATTTGCGACTAGCATGTTTATAAAGATATTCATCCTACTCGTTCTAATTTGATTAAACGGGGGATGGATATTAACCCAACTTGTTTTCTGTGCAGGAACAAACTGGAGACTGCCACACCATCTTTTTTGGGAGTGTAAATGCACAAAACGATTATGGCCTAAATATTTTTCATCTATTGAGTTAGTTCCTTTGAATGACAGGAAAGGACGGAACACAACAGACTATTGCGATTGGCTTTAGAGGAGATCAAGAGAAGGAAGCATGAACAAGAGCAACTTAATAAAGAGTCTGATAATAGCTGGCAGATATGGAGCTTTCGGAATGCGGTCTATCACAACAATCAACAACCAGACTCAGATAAATTACAAATCCTAGTCGAAAAGTATATGGAAGAGTTATCTAAGGAGGAAAACACTGACCTGGTAAATACCTTCCCCAATGGAAGGCTGATGCAATCGTCCTCTAGACGGATCTCGCCTCCTCACAGAATGTGGAAGATGAGTTGCGATGCTTCGTGGAACAAGGAGAAAAACCAAGGTGGAATTGGTTGGGTTCTCAGGGATTGGAATGGATCACCGCAGATAGCAGGATGTCGATGTATCAAACGGCCATGGCGAATTGAATGGCTTGAAGCTCTAGCGATTAGTGAGGGACTGTGA ATGGGTTGCGTTGAATCAGTGAGTTTCCAAGTCATTCTTAATGGACCACCTCACTCAACCTTCACACCAAAGAGAGATGACAGTCTCTTGTTTTTTAAGGCCACTAACAAAGATTGCAGGACTATTCAAAGAATCCTAGATATATATGAGAAGGCTTCGGATCAAATAGTGAATTTTGAGAAGTCAATGTTCATGGTCAGCCCTAACACAAGTCAGATTTTGGTGGGGCAACTTGAAGGACGAACACAATATTCACTGGCGGAGTTGAAAAAGTTTTGCATAAATAAGCTTCATGAAGGTATGGGCTTTAGGGATCTTGTTGTCTTCAATCAAGCCATGCTGGAAAAACATAGTTGGAGGTTGATTAAATATCCGGATAGTCTGTCAGCCAAGGAAAGGACGGAACACAACAGACTATTGCGATTGGCTTTAGAGGAGATCAAGAGAAGGAAGCATGAACAAGAGCAACTTAATAAAGAGTCTGATAATAGCTGGCAGATATGGAGCTTTCGGAATGCGGTCTATCACAACAATCAACAACCAGACTCAGATAAATTACAAATCCTAGTCGAAAAGTATATGGAAGAGTTATCTAAGGAGGAAAACACTGACCTGGTAAATACCTTCCCCAATGGAAGGCTGATGCAATCGTCCTCTAGACGGATCTCGCCTCCTCACAGAATGTGGAAGATGAGTTGCGATGCTTCGTGGAACAAGGAGAAAAACCAAGGTGGAATTGGTTGGGTTCTCAGGGATTGGAATGGATCACCGCAGATAGCAGGATGTCGATGTATCAAACGGCCATGGCGAATTGAATGGCTTGAAGCTCTAGCGATTAGTGAGGGACTGTGA ATGGGTTGCGTTGAATCAGTGAGTTTCCAAGTCATTCTTAATGGACCACCTCACTCAACCTTCACACCAAAGAGAGATGACAGTCTCTTGTTTTTTAAGGCCACTAACAAAGATTGCAGGACTATTCAAAGAATCCTAGATATATATGAGAAGGCTTCGGATCAAATAGTGAATTTTGAGAAGTCAATGTTCATGGTCAGCCCTAACACAAGTCAGATTTTGGTGGGGCAACTTGAAGGACGAACACAATATTCACTGGCGGAGTTGAAAAAGTTTTGCATAAATAAGCTTCATGAAGGTATGGGCTTTAGGGATCTTGTTGTCTTCAATCAAGCCATGCTGGAAAAACATAGTTGGAGGTTGATTAAATATCCGGATAGTCTGTCAGCCAAGGAAAGGACGGAACACAACAGACTATTGCGATTGGCTTTAGAGGAGATCAAGAGAAGGAAGCATGAACAAGAGCAACTTAATAAAGAGTCTGATAATAGCTGGCAGATATGGAGCTTTCGGAATGCGGTCTATCACAACAATCAACAACCAGACTCAGATAAATTACAAATCCTAGTCGAAAAGTATATGGAAGAGTTATCTAAGGAGGAAAACACTGACCTGGTAAATACCTTCCCCAATGGAAGGCTGATGCAATCGTCCTCTAGACGGATCTCGCCTCCTCACAGAATGTGGAAGATGAGTTGCGATGCTTCGTGGAACAAGGAGAAAAACCAAGGTGGAATTGGTTGGGTTCTCAGGGATTGGAATGGATCACCGCAGATAGCAGGATGTCGATGTATCAAACGGCCATGGCGAATTGAATGGCTTGAAGCTCTAGCGATTAGTGAGGGACTGTGA MGCVESVSFQVILNGPPHSTFTPKRDDSLLFFKATNKDCRTIQRILDIYEKASDQIVNFEKSMFMVSPNTSQILVGQLEGRTQYSLAELKKFCINKLHEGMGFRDLVVFNQAMLEKHSWRLIKYPDSLSAKERTEHNRLLRLALEEIKRRKHEQEQLNKESDNSWQIWSFRNAVYHNNQQPDSDKLQILVEKYMEELSKEENTDLVNTFPNGRLMQSSSRRISPPHRMWKMSCDASWNKEKNQGGIGWVLRDWNGSPQIAGCRCIKRPWRIEWLEALAISEGL Homology
BLAST of Lcy02g004870.1 vs. ExPASy TrEMBL
Match: A0A5B6U8V5 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_009683 PE=4 SV=1) HSP 1 Score: 84.7 bits (208), Expect = 6.6e-13 Identity = 52/131 (39.69%), Postives = 69/131 (52.67%), Query Frame = 0
BLAST of Lcy02g004870.1 vs. ExPASy TrEMBL
Match: A0A803QMZ3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 7.3e-12 Identity = 57/196 (29.08%), Postives = 82/196 (41.84%), Query Frame = 0
BLAST of Lcy02g004870.1 vs. ExPASy TrEMBL
Match: A0A2Z6N1B1 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_223860 PE=4 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 9.6e-12 Identity = 51/161 (31.68%), Postives = 74/161 (45.96%), Query Frame = 0
BLAST of Lcy02g004870.1 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 6.2e-11 Identity = 45/140 (32.14%), Postives = 71/140 (50.71%), Query Frame = 0
BLAST of Lcy02g004870.1 vs. ExPASy TrEMBL
Match: A0A2N9IXK4 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57484 PE=4 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 1.1e-10 Identity = 61/199 (30.65%), Postives = 82/199 (41.21%), Query Frame = 0
BLAST of Lcy02g004870.1 vs. NCBI nr
Match: XP_020889487.1 (uncharacterized protein LOC110230528 isoform X1 [Arabidopsis lyrata subsp. lyrata]) HSP 1 Score: 93.6 bits (231), Expect = 3.0e-15 Identity = 50/135 (37.04%), Postives = 76/135 (56.30%), Query Frame = 0
BLAST of Lcy02g004870.1 vs. NCBI nr
Match: XP_020889488.1 (uncharacterized protein LOC110230528 isoform X2 [Arabidopsis lyrata subsp. lyrata]) HSP 1 Score: 93.6 bits (231), Expect = 3.0e-15 Identity = 50/135 (37.04%), Postives = 76/135 (56.30%), Query Frame = 0
BLAST of Lcy02g004870.1 vs. NCBI nr
Match: XP_020889489.1 (uncharacterized protein LOC110230528 isoform X3 [Arabidopsis lyrata subsp. lyrata]) HSP 1 Score: 93.6 bits (231), Expect = 3.0e-15 Identity = 50/135 (37.04%), Postives = 76/135 (56.30%), Query Frame = 0
BLAST of Lcy02g004870.1 vs. NCBI nr
Match: XP_020874115.1 (uncharacterized protein LOC110226518 [Arabidopsis lyrata subsp. lyrata]) HSP 1 Score: 92.0 bits (227), Expect = 8.6e-15 Identity = 49/135 (36.30%), Postives = 75/135 (55.56%), Query Frame = 0
BLAST of Lcy02g004870.1 vs. NCBI nr
Match: XP_021603893.1 (uncharacterized protein LOC110608920 [Manihot esculenta]) HSP 1 Score: 92.0 bits (227), Expect = 8.6e-15 Identity = 51/133 (38.35%), Postives = 69/133 (51.88%), Query Frame = 0
BLAST of Lcy02g004870.1 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 54.3 bits (129), Expect = 1.8e-07 Identity = 30/104 (28.85%), Postives = 53/104 (50.96%), Query Frame = 0
HSP 2 Score: 41.2 bits (95), Expect = 1.6e-03 Identity = 17/36 (47.22%), Postives = 24/36 (66.67%), Query Frame = 0
BLAST of Lcy02g004870.1 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein ) HSP 1 Score: 45.4 bits (106), Expect = 8.6e-05 Identity = 27/103 (26.21%), Postives = 49/103 (47.57%), Query Frame = 0
BLAST of Lcy02g004870.1 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein ) HSP 1 Score: 42.0 bits (97), Expect = 9.5e-04 Identity = 22/54 (40.74%), Postives = 34/54 (62.96%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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