Lcy02g001500.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy02g001500.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Glucose-repressible alcohol dehydrogenase transcriptional effector like
Location	Chr02: 2020776 .. 2021546 (-)
Sequence length	771
RNA-Seq Expression	Lcy02g001500.1
Synteny	Lcy02g001500.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTTCTAAACTTCTTCTCTCTCTCTAAACTCTTTTTTTTTCTCTCTCTCTCTCTAAACTCTTGTTCTTGTTCTTGCCATTTTTGTTGTGTAATTTTGCAGGTTTTTGAAGGAAAAAAAAAAAATAAAAAAAGATGGTGATGATATTGGGTTTTGAGAGATTAGTGGTGAATTTGAAAGCAAAAATTATGAAGTCATTGAAGATGAAGAAGGCAACAAATTATGATAAGATGGAGAAAAGTGAAAGCATGAGAGTTGAAATCAGAAGCAGAAAGGCTCAAAAGCTCATCCAAGAGACCATGAAAATTGCTGACTCTCCCTCTACAAAAACTTATGCTTTTTGATTTTTCTCTTCTTTTTTTTTTTTACAGAGGTGTCTAAAATGGAGTCTAATTTGTAATGGGTGTTCTTTAATTTCAATGAATTTATTATGTTGCTTCCTAATTTTCAGTGTATGGGAGGAGGGGAAGAAGAAGAAGAAGATTTTTTTCCTTTCTCTCTCATTTTCTTGTTGATTTTCTGGGCTGCCAAACACTACTTTGAACTTCTTTTTCTTTTCTCTGTCAGAGATTAAATGTTTGAGTTTCTCGGGTAAGGTGGAAATTCGAACTTCTGACGAACTTTGATACCAAGTGTTATGATTGTGTTTGAGTGATTGTGTGGCACTTGTTTCTACTTACAAGCGACGCTACATGTCTATCTCGAGAAAATTTTGAATGAAGTAAATAATTTGGAAAAATGTCGTAGTGAAAGTTGAGAAATGATATATTAA

mRNA sequence

CATTTCTAAACTTCTTCTCTCTCTCTAAACTCTTTTTTTTTCTCTCTCTCTCTCTAAACTCTTGTTCTTGTTCTTGCCATTTTTGTTGTGTAATTTTGCAGGTTTTTGAAGGAAAAAAAAAAAATAAAAAAAGATGGTGATGATATTGGGTTTTGAGAGATTAGTGGTGAATTTGAAAGCAAAAATTATGAAGTCATTGAAGATGAAGAAGGCAACAAATTATGATAAGATGGAGAAAAGTGAAAGCATGAGAGTTGAAATCAGAAGCAGAAAGGCTCAAAAGCTCATCCAAGAGACCATGAAAATTGCTGACTCTCCCTCTACAAAAACTTATGCTTTTTGATTTTTCTCTTCTTTTTTTTTTTTACAGAGGTGTCTAAAATGGAGTCTAATTTGTAATGGGTGTTCTTTAATTTCAATGAATTTATTATGTTGCTTCCTAATTTTCAGTGTATGGGAGGAGGGGAAGAAGAAGAAGAAGATTTTTTTCCTTTCTCTCTCATTTTCTTGTTGATTTTCTGGGCTGCCAAACACTACTTTGAACTTCTTTTTCTTTTCTCTGTCAGAGATTAAATGTTTGAGTTTCTCGGGTAAGGTGGAAATTCGAACTTCTGACGAACTTTGATACCAAGTGTTATGATTGTGTTTGAGTGATTGTGTGGCACTTGTTTCTACTTACAAGCGACGCTACATGTCTATCTCGAGAAAATTTTGAATGAAGTAAATAATTTGGAAAAATGTCGTAGTGAAAGTTGAGAAATGATATATTAA

Coding sequence (CDS)

ATGGTGATGATATTGGGTTTTGAGAGATTAGTGGTGAATTTGAAAGCAAAAATTATGAAGTCATTGAAGATGAAGAAGGCAACAAATTATGATAAGATGGAGAAAAGTGAAAGCATGAGAGTTGAAATCAGAAGCAGAAAGGCTCAAAAGCTCATCCAAGAGACCATGAAAATTGCTGACTCTCCCTCTACAAAAACTTATGCTTTTTGA

Protein sequence

MVMILGFERLVVNLKAKIMKSLKMKKATNYDKMEKSESMRVEIRSRKAQKLIQETMKIADSPSTKTYAF

Homology

[Close]

BLAST of Lcy02g001500.1 vs. ExPASy TrEMBL
Match: A0A5C7HLI3 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_015680 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.6e-15
Identity = 46/65 (70.77%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 5  LGFERLVVNLKAKIMKSLKMKKATNYDKMEKSESMRVEIRSRKAQKLIQETMKIADSPST 64
          +G ERL+VNLK+KI +SLKMK   +YDK+EKSESMRVEIRSRKA+KL+++T+KIADSP+T
Sbjct: 1  MGLERLMVNLKSKISRSLKMKINKHYDKIEKSESMRVEIRSRKARKLVEQTLKIADSPNT 60

Query: 65 KTYAF 70
          KT+ F
Sbjct: 61 KTFVF 65

[Close]

BLAST of Lcy02g001500.1 vs. ExPASy TrEMBL
Match: A0A2C9WL25 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G107200 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.6e-15
Identity = 52/67 (77.61%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 3  MILGFERLVVNLKAKIMKSLKMKKATNYDKMEKSESMRVEIRSRKAQKLIQETMKIADSP 62
          M++G ERLVV+LK+KI +SLKMKK   YDK+EKSESMRVEIRSRKA+KLI+ETMKIADSP
Sbjct: 1  MVMGLERLVVSLKSKI-RSLKMKKL--YDKIEKSESMRVEIRSRKARKLIEETMKIADSP 60

Query: 63 STKTYAF 70
           +KTYAF
Sbjct: 61 KSKTYAF 64

[Close]

BLAST of Lcy02g001500.1 vs. ExPASy TrEMBL
Match: A0A061EHJ2 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_019614 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 52/70 (74.29%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1  MVMILGFERLVVNLKAKIMKSLKMKKATNYDKMEKSESMRVEIRSRKAQKLIQETMKIAD 60
          M M++GF RLVV+LK+K ++ LKMKK   YDK+EKSESMRVEIRSRKA+KLI+ETMKIAD
Sbjct: 3  MNMMMGFGRLVVSLKSK-LRYLKMKKPAYYDKIEKSESMRVEIRSRKARKLIEETMKIAD 62

Query: 61 SPST-KTYAF 70
          SP T KTYAF
Sbjct: 63 SPRTSKTYAF 71

[Close]

BLAST of Lcy02g001500.1 vs. ExPASy TrEMBL
Match: A0A1S8ACZ4 (Uncharacterized protein OS=Citrus limon OX=2708 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.6e-13
Identity = 50/68 (73.53%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 2  VMILGFERLVVNLKAKIMKSLKMKKATNYDKMEKSESMRVEIRSRKAQKLIQETMKIADS 61
          ++++G ERLVV+LK+KI +SLKMKK   YDK+EKSESMRVEIRSRKA+KLI++TMKIADS
Sbjct: 1  MVMMGLERLVVSLKSKI-RSLKMKKF--YDKIEKSESMRVEIRSRKARKLIEKTMKIADS 60

Query: 62 PSTKTYAF 70
          P TKT+AF
Sbjct: 61 PKTKTFAF 65

[Close]

BLAST of Lcy02g001500.1 vs. ExPASy TrEMBL
Match: A0A2G5D7Q5 (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_02600176v1 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.6e-13
Identity = 46/66 (69.70%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 4  ILGFERLVVNLKAKIMKSLKMKKATNYDKMEKSESMRVEIRSRKAQKLIQETMKIADSPS 63
          ++G ERLV+NLK K++K+LK KK   YDK+EKSESMRVEIRS+KA+KLI+ET+KIADSP 
Sbjct: 1  MMGLERLVLNLKTKVLKALKPKKL--YDKVEKSESMRVEIRSKKARKLIEETLKIADSPK 60

Query: 64 TKTYAF 70
           K+YAF
Sbjct: 61 NKSYAF 64

[Close]

BLAST of Lcy02g001500.1 vs. NCBI nr
Match: KAG7036740.1 (hypothetical protein SDJN02_00360, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 99.4 bits (246), Expect = 1.3e-17
Identity = 57/62 (91.94%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 8  ERLVVNLKAKIMKSLKMKKAT-NYDKMEKSESMRVEIRSRKAQKLIQETMKIADSPSTKT 67
          +RLVVNLKAKIMKSLKMKKAT +YDKMEKSESMRVEIRSRKAQKLIQ+TMKIADSPS+KT
Sbjct: 2  KRLVVNLKAKIMKSLKMKKATDSYDKMEKSESMRVEIRSRKAQKLIQQTMKIADSPSSKT 61

Query: 68 YA 69
          YA
Sbjct: 62 YA 63

[Close]

BLAST of Lcy02g001500.1 vs. NCBI nr
Match: TXG57851.1 (hypothetical protein EZV62_015680 [Acer yangbiense])

HSP 1 Score: 89.0 bits (219), Expect = 1.8e-14
Identity = 46/65 (70.77%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 5  LGFERLVVNLKAKIMKSLKMKKATNYDKMEKSESMRVEIRSRKAQKLIQETMKIADSPST 64
          +G ERL+VNLK+KI +SLKMK   +YDK+EKSESMRVEIRSRKA+KL+++T+KIADSP+T
Sbjct: 1  MGLERLMVNLKSKISRSLKMKINKHYDKIEKSESMRVEIRSRKARKLVEQTLKIADSPNT 60

Query: 65 KTYAF 70
          KT+ F
Sbjct: 61 KTFVF 65

[Close]

BLAST of Lcy02g001500.1 vs. NCBI nr
Match: OAY60374.1 (hypothetical protein MANES_01G107200v8 [Manihot esculenta])

HSP 1 Score: 89.0 bits (219), Expect = 1.8e-14
Identity = 52/67 (77.61%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 3  MILGFERLVVNLKAKIMKSLKMKKATNYDKMEKSESMRVEIRSRKAQKLIQETMKIADSP 62
          M++G ERLVV+LK+KI +SLKMKK   YDK+EKSESMRVEIRSRKA+KLI+ETMKIADSP
Sbjct: 1  MVMGLERLVVSLKSKI-RSLKMKKL--YDKIEKSESMRVEIRSRKARKLIEETMKIADSP 60

Query: 63 STKTYAF 70
           +KTYAF
Sbjct: 61 KSKTYAF 64

[Close]

BLAST of Lcy02g001500.1 vs. NCBI nr
Match: XP_031109868.1 (uncharacterized protein LOC116014024 [Ipomoea triloba])

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13
Identity = 45/68 (66.18%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 2   VMILGFERLVVNLKAKIMKSLKMKKATNYDKMEKSESMRVEIRSRKAQKLIQETMKIADS 61
           ++++G ERLVV+LK K+ +S+K K  ++YDK+EKS+SMRVEIRSRKAQKLIQET+KIADS
Sbjct: 65  MVMMGLERLVVSLKTKLRRSVKTKNNSSYDKIEKSDSMRVEIRSRKAQKLIQETLKIADS 124

Query: 62  PSTKTYAF 70
           P TK++ F
Sbjct: 125 PHTKSFPF 132

[Close]

BLAST of Lcy02g001500.1 vs. NCBI nr
Match: EOY04331.1 (Uncharacterized protein TCM_019614 [Theobroma cacao])

HSP 1 Score: 85.1 bits (209), Expect = 2.6e-13
Identity = 52/70 (74.29%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1  MVMILGFERLVVNLKAKIMKSLKMKKATNYDKMEKSESMRVEIRSRKAQKLIQETMKIAD 60
          M M++GF RLVV+LK+K ++ LKMKK   YDK+EKSESMRVEIRSRKA+KLI+ETMKIAD
Sbjct: 3  MNMMMGFGRLVVSLKSK-LRYLKMKKPAYYDKIEKSESMRVEIRSRKARKLIEETMKIAD 62

Query: 61 SPST-KTYAF 70
          SP T KTYAF
Sbjct: 63 SPRTSKTYAF 71

[Close]

BLAST of Lcy02g001500.1 vs. TAIR 10
Match: AT3G19660.1 (unknown protein; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 2.7e-05
Identity = 29/64 (45.31%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 3  MILGFERLVVNLKAKIMKSLKMKKATNYDKMEKSESMRVEIRSRKAQKLIQETMKIADSP 62
          M L  E L+  +K+K+  SL  KK   Y KM+KS S+RV IR +K + LI +T+K+AD P
Sbjct: 1  MGLQLESLMETIKSKV--SLLRKKKKTYIKMDKSSSVRVAIRRKKTRDLIDKTLKVADRP 60

Query: 63 STKT 67
            +T
Sbjct: 61 GKRT 62

The following BLAST results are available for this feature:

BLAST of Lcy02g001500.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g001500.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C7HLI3	8.6e-15	70.77	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_015680 PE=4 SV=1	[more]
A0A2C9WL25	8.6e-15	77.61	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G107200 PE=4 SV=...	[more]
A0A061EHJ2	1.2e-13	74.29	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_019614 PE=4 SV=1	[more]
A0A1S8ACZ4	1.6e-13	73.53	Uncharacterized protein OS=Citrus limon OX=2708 PE=4 SV=1	[more]
A0A2G5D7Q5	1.6e-13	69.70	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_02600176v1 PE=4...	[more]

BLAST of Lcy02g001500.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036740.1	1.3e-17	91.94	hypothetical protein SDJN02_00360, partial [Cucurbita argyrosperma subsp. argyro...	[more]
TXG57851.1	1.8e-14	70.77	hypothetical protein EZV62_015680 [Acer yangbiense]	[more]
OAY60374.1	1.8e-14	77.61	hypothetical protein MANES_01G107200v8 [Manihot esculenta]	[more]
XP_031109868.1	1.5e-13	66.18	uncharacterized protein LOC116014024 [Ipomoea triloba]	[more]
EOY04331.1	2.6e-13	74.29	Uncharacterized protein TCM_019614 [Theobroma cacao]	[more]

BLAST of Lcy02g001500.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19660.1	2.7e-05	45.31	unknown protein; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34563	BNACNNG33880D PROTEIN	coord: 1..69

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy02g001500	Lcy02g001500	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy02g001500.1.exon1	Lcy02g001500.1.exon1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy02g001500.1.utr3p1	Lcy02g001500.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy02g001500.1.cds1	Lcy02g001500.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy02g001500.1.utr5p1	Lcy02g001500.1.utr5p1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy02g001500.1	Lcy02g001500.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071277	cellular response to calcium ion
biological_process	GO:0009704	de-etiolation
biological_process	GO:0090333	regulation of stomatal closure
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity