Lcy02g000170.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy02g000170.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	stress-induced protein KIN2-like
Location	Chr02: 488210 .. 488787 (+)
Sequence length	364
RNA-Seq Expression	Lcy02g000170.1
Synteny	Lcy02g000170.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGACAACTCTCAACAGATGAGTTACCACATCGGACAAGCCAAAGGCCAAGCACAGGTTCACTTTGTCACTACTAATGATATTTAGCCATGTCATTATTTTATTAAATGGGTCATGCTTTAAAAATAGTTTGTAGTACAAGTGGCATATAATCCCAACATTATTTCTAATGAGGGGTGATCTTGTTGAAAAGTGTTCCATATTTATATTATATTGTCTTTTCAGATTAAAGTGTGATTGGTAACATACTGATTTGTGTGTGATTATGTAGGAGAAGGCAAGCAACCTAATGGACAAAGCAAGTGATGCAGCCCAATCAGCCAAGGACTCACTACAAGAGGCAGGACAACAAATAAAGGCCAAGGCACAGGGTGCCACCGATGCTGTCAAAGATGCCACTGGCATGAACAAATGAAGTTTTTCCATTTCCCATTTTTTATGTTTTTCTCCAAATGACTTGCTTCATTTTTGTTATTTGTTTTGTTTCTTATGTTAAAGCTCTCATGTATCCCGGCTTTGTATTTTCCTTTTGTGTGGACAAACAAAAAAATAAAACTATATAATGTTGCTGAGCC

mRNA sequence

ATGGCAGACAACTCTCAACAGATGAGTTACCACATCGGACAAGCCAAAGGCCAAGCACAGGAGAAGGCAAGCAACCTAATGGACAAAGCAAGTGATGCAGCCCAATCAGCCAAGGACTCACTACAAGAGGCAGGACAACAAATAAAGGCCAAGGCACAGGGTGCCACCGATGCTGTCAAAGATGCCACTGGCATGAACAAATGAAGTTTTTCCATTTCCCATTTTTTATGTTTTTCTCCAAATGACTTGCTTCATTTTTGTTATTTGTTTTGTTTCTTATGTTAAAGCTCTCATGTATCCCGGCTTTGTATTTTCCTTTTGTGTGGACAAACAAAAAAATAAAACTATATAATGTTGCTGAGCC

Coding sequence (CDS)

ATGGCAGACAACTCTCAACAGATGAGTTACCACATCGGACAAGCCAAAGGCCAAGCACAGGAGAAGGCAAGCAACCTAATGGACAAAGCAAGTGATGCAGCCCAATCAGCCAAGGACTCACTACAAGAGGCAGGACAACAAATAAAGGCCAAGGCACAGGGTGCCACCGATGCTGTCAAAGATGCCACTGGCATGAACAAATGA

Protein sequence

MADNSQQMSYHIGQAKGQAQEKASNLMDKASDAAQSAKDSLQEAGQQIKAKAQGATDAVKDATGMNK

Homology

[Close]

BLAST of Lcy02g000170.1 vs. ExPASy Swiss-Prot
Match: P31169 (Stress-induced protein KIN2 OS=Arabidopsis thaliana OX=3702 GN=KIN2 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.2e-05
Identity = 29/59 (49.15%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 9  SYHIGQAKGQAQEKASNLMDKASDAAQSAKDSLQEAGQQIKAKAQGATDAVKDATGMNK 68
          ++  GQA G+A+EK++ L+DKA DAA +A  S Q+AG+ I   A G  + VKD TG+NK
Sbjct: 8  AFQAGQAAGKAEEKSNVLLDKAKDAAAAAGASAQQAGKSISDAAVGGVNFVKDKTGLNK 66

[Close]

BLAST of Lcy02g000170.1 vs. ExPASy Swiss-Prot
Match: P18612 (Stress-induced protein KIN1 OS=Arabidopsis thaliana OX=3702 GN=KIN1 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.3e-04
Identity = 26/59 (44.07%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 9  SYHIGQAKGQAQEKASNLMDKASDAAQSAKDSLQEAGQQIKAKAQGATDAVKDATGMNK 68
          ++  GQ  G+A+EK++ L+DKA DAA  A    Q+AG+ +   A G  + VKD TG+NK
Sbjct: 8  AFQAGQTAGKAEEKSNVLLDKAKDAAAGAGAGAQQAGKSVSDAAAGGVNFVKDKTGLNK 66

[Close]

BLAST of Lcy02g000170.1 vs. ExPASy TrEMBL
Match: A0A6J1E4Q8 (stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026049 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.0e-21
Identity = 59/67 (88.06%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MADNSQQMSYHIGQAKGQAQEKASNLMDKASDAAQSAKDSLQEAGQQIKAKAQGATDAVK 60
          MADNSQ+MSYH G+AKGQAQEKASN+MDKASDAAQSAK+S+QEAGQQ+KAKAQGA DAVK
Sbjct: 1  MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESVQEAGQQVKAKAQGAADAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Lcy02g000170.1 vs. ExPASy TrEMBL
Match: A0A5A7TJP0 (Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1167G00300 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.7e-21
Identity = 58/67 (86.57%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MADNSQQMSYHIGQAKGQAQEKASNLMDKASDAAQSAKDSLQEAGQQIKAKAQGATDAVK 60
          MADNSQ+MSYH+G+AKGQAQEKASN+MDKASD AQSAK+S+QEAGQQ+KAKAQGA DAVK
Sbjct: 1  MADNSQKMSYHVGEAKGQAQEKASNMMDKASDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Lcy02g000170.1 vs. ExPASy TrEMBL
Match: A0A1S3ASP1 (stress-induced protein KIN2-like OS=Cucumis melo OX=3656 GN=LOC103482578 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.7e-21
Identity = 58/67 (86.57%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MADNSQQMSYHIGQAKGQAQEKASNLMDKASDAAQSAKDSLQEAGQQIKAKAQGATDAVK 60
          MADNSQ+MSYH+G+AKGQAQEKASN+MDKASD AQSAK+S+QEAGQQ+KAKAQGA DAVK
Sbjct: 1  MADNSQKMSYHVGEAKGQAQEKASNMMDKASDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Lcy02g000170.1 vs. ExPASy TrEMBL
Match: A0A6J1E4S0 (stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026055 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.6e-21
Identity = 58/67 (86.57%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MADNSQQMSYHIGQAKGQAQEKASNLMDKASDAAQSAKDSLQEAGQQIKAKAQGATDAVK 60
          MADNSQ+MSYH G+AKGQAQEKASN+MDKASDAAQSAK+S+QEAGQQ+KAKAQG  DAVK
Sbjct: 1  MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESMQEAGQQVKAKAQGVADAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Lcy02g000170.1 vs. ExPASy TrEMBL
Match: A0A0A0KRE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G165860 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.8e-21
Identity = 58/67 (86.57%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MADNSQQMSYHIGQAKGQAQEKASNLMDKASDAAQSAKDSLQEAGQQIKAKAQGATDAVK 60
          MADNS++MSYHIG+AKGQAQEKASNLMDKA D AQSAK+S+QEAGQQ+KAKAQGA DAVK
Sbjct: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Lcy02g000170.1 vs. NCBI nr
Match: XP_022159706.1 (stress-induced protein KIN2-like [Momordica charantia])

HSP 1 Score: 110.9 bits (276), Expect = 4.2e-21
Identity = 59/67 (88.06%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MADNSQQMSYHIGQAKGQAQEKASNLMDKASDAAQSAKDSLQEAGQQIKAKAQGATDAVK 60
          MADNSQ+MSYH G+AKGQAQEKASN+MDKASDAAQSAK+S+QEAGQQ+KAKAQGA DAVK
Sbjct: 1  MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESVQEAGQQVKAKAQGAADAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Lcy02g000170.1 vs. NCBI nr
Match: XP_008437025.1 (PREDICTED: stress-induced protein KIN2-like [Cucumis melo] >KAA0043490.1 stress-induced protein KIN2-like [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 5.5e-21
Identity = 58/67 (86.57%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MADNSQQMSYHIGQAKGQAQEKASNLMDKASDAAQSAKDSLQEAGQQIKAKAQGATDAVK 60
          MADNSQ+MSYH+G+AKGQAQEKASN+MDKASD AQSAK+S+QEAGQQ+KAKAQGA DAVK
Sbjct: 1  MADNSQKMSYHVGEAKGQAQEKASNMMDKASDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Lcy02g000170.1 vs. NCBI nr
Match: XP_022159716.1 (stress-induced protein KIN2-like [Momordica charantia])

HSP 1 Score: 109.8 bits (273), Expect = 9.4e-21
Identity = 58/67 (86.57%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MADNSQQMSYHIGQAKGQAQEKASNLMDKASDAAQSAKDSLQEAGQQIKAKAQGATDAVK 60
          MADNSQ+MSYH G+AKGQAQEKASN+MDKASDAAQSAK+S+QEAGQQ+KAKAQG  DAVK
Sbjct: 1  MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESMQEAGQQVKAKAQGVADAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Lcy02g000170.1 vs. NCBI nr
Match: XP_004152387.1 (stress-induced protein KIN2 [Cucumis sativus] >KGN50291.1 hypothetical protein Csa_000602 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 1.6e-20
Identity = 58/67 (86.57%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MADNSQQMSYHIGQAKGQAQEKASNLMDKASDAAQSAKDSLQEAGQQIKAKAQGATDAVK 60
          MADNS++MSYHIG+AKGQAQEKASNLMDKA D AQSAK+S+QEAGQQ+KAKAQGA DAVK
Sbjct: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Lcy02g000170.1 vs. NCBI nr
Match: XP_038876189.1 (stress-induced protein KIN2-like [Benincasa hispida])

HSP 1 Score: 106.7 bits (265), Expect = 8.0e-20
Identity = 58/67 (86.57%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MADNSQQMSYHIGQAKGQAQEKASNLMDKASDAAQSAKDSLQEAGQQIKAKAQGATDAVK 60
          MADNSQ+MSYHIG+ KGQAQEKASNLMDKA DAAQS K+S+QEAGQQIKAKAQ AT+AVK
Sbjct: 1  MADNSQKMSYHIGETKGQAQEKASNLMDKAGDAAQSVKESVQEAGQQIKAKAQDATNAVK 60

Query: 61 DATGMNK 68
          DATGMNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Lcy02g000170.1 vs. TAIR 10
Match: AT5G38760.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 90.1 bits (222), Expect = 7.2e-19
Identity = 49/67 (73.13%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1  MADNSQQMSYHIGQAKGQAQEKASNLMDKASDAAQSAKDSLQEAGQQIKAKAQGATDAVK 60
          M+ NSQ +S+  GQAKGQ QEKAS +MDKAS+AAQSAK+SL+E GQQIK KAQGAT++VK
Sbjct: 1  MSSNSQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLKETGQQIKEKAQGATESVK 60

Query: 61 DATGMNK 68
          +ATGMNK
Sbjct: 61 NATGMNK 67

[Close]

BLAST of Lcy02g000170.1 vs. TAIR 10
Match: AT5G53820.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 86.7 bits (213), Expect = 8.0e-18
Identity = 45/67 (67.16%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1  MADNSQQMSYHIGQAKGQAQEKASNLMDKASDAAQSAKDSLQEAGQQIKAKAQGATDAVK 60
          M++NSQ MS++ GQAKGQ QEKASNL+DKAS+AAQSAK+S+QE GQQ+K KAQGA++ +K
Sbjct: 1  MSNNSQSMSFNAGQAKGQTQEKASNLIDKASNAAQSAKESIQEGGQQLKQKAQGASETIK 60

Query: 61 DATGMNK 68
          + TG++K
Sbjct: 61 EKTGISK 67

[Close]

BLAST of Lcy02g000170.1 vs. TAIR 10
Match: AT3G02480.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 80.5 bits (197), Expect = 5.7e-16
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 3  DNSQQMSYHIGQAKGQAQEKASNLMDKASDAAQSAKDSLQEAGQQIKAKAQGATDAVKDA 62
          DN Q  SY  GQA GQ +EKA  +MDKA DAA SA+DSLQ+ GQQ+K KAQGA D VKD 
Sbjct: 2  DNKQNASYQAGQATGQTKEKAGGMMDKAKDAAASAQDSLQQTGQQMKEKAQGAADVVKDK 61

Query: 63 TGMNK 68
          TGMNK
Sbjct: 62 TGMNK 66

[Close]

BLAST of Lcy02g000170.1 vs. TAIR 10
Match: AT5G15970.1 (stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6) )

HSP 1 Score: 50.1 bits (118), Expect = 8.3e-07
Identity = 29/59 (49.15%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 9  SYHIGQAKGQAQEKASNLMDKASDAAQSAKDSLQEAGQQIKAKAQGATDAVKDATGMNK 68
          ++  GQA G+A+EK++ L+DKA DAA +A  S Q+AG+ I   A G  + VKD TG+NK
Sbjct: 8  AFQAGQAAGKAEEKSNVLLDKAKDAAAAAGASAQQAGKSISDAAVGGVNFVKDKTGLNK 66

[Close]

BLAST of Lcy02g000170.1 vs. TAIR 10
Match: AT5G15960.1 (stress-responsive protein (KIN1) / stress-induced protein (KIN1) )

HSP 1 Score: 46.6 bits (109), Expect = 9.1e-06
Identity = 26/59 (44.07%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 9  SYHIGQAKGQAQEKASNLMDKASDAAQSAKDSLQEAGQQIKAKAQGATDAVKDATGMNK 68
          ++  GQ  G+A+EK++ L+DKA DAA  A    Q+AG+ +   A G  + VKD TG+NK
Sbjct: 8  AFQAGQTAGKAEEKSNVLLDKAKDAAAGAGAGAQQAGKSVSDAAAGGVNFVKDKTGLNK 66

The following BLAST results are available for this feature:

BLAST of Lcy02g000170.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P31169	1.2e-05	49.15	Stress-induced protein KIN2 OS=Arabidopsis thaliana OX=3702 GN=KIN2 PE=2 SV=1	[more]
P18612	1.3e-04	44.07	Stress-induced protein KIN1 OS=Arabidopsis thaliana OX=3702 GN=KIN1 PE=2 SV=1	[more]

BLAST of Lcy02g000170.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E4Q8	2.0e-21	88.06	stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026049 ...	[more]
A0A5A7TJP0	2.7e-21	86.57	Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A1S3ASP1	2.7e-21	86.57	stress-induced protein KIN2-like OS=Cucumis melo OX=3656 GN=LOC103482578 PE=4 SV...	[more]
A0A6J1E4S0	4.6e-21	86.57	stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026055 ...	[more]
A0A0A0KRE1	7.8e-21	86.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G165860 PE=4 SV=1	[more]

BLAST of Lcy02g000170.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159706.1	4.2e-21	88.06	stress-induced protein KIN2-like [Momordica charantia]	[more]
XP_008437025.1	5.5e-21	86.57	PREDICTED: stress-induced protein KIN2-like [Cucumis melo] >KAA0043490.1 stress-...	[more]
XP_022159716.1	9.4e-21	86.57	stress-induced protein KIN2-like [Momordica charantia]	[more]
XP_004152387.1	1.6e-20	86.57	stress-induced protein KIN2 [Cucumis sativus] >KGN50291.1 hypothetical protein C...	[more]
XP_038876189.1	8.0e-20	86.57	stress-induced protein KIN2-like [Benincasa hispida]	[more]

BLAST of Lcy02g000170.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G38760.1	7.2e-19	73.13	Late embryogenesis abundant protein (LEA) family protein	[more]
AT5G53820.1	8.0e-18	67.16	Late embryogenesis abundant protein (LEA) family protein	[more]
AT3G02480.1	5.7e-16	67.69	Late embryogenesis abundant protein (LEA) family protein	[more]
AT5G15970.1	8.3e-07	49.15	stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsi...	[more]
AT5G15960.1	9.1e-06	44.07	stress-responsive protein (KIN1) / stress-induced protein (KIN1)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 27..47
None	No IPR available	GENE3D	6.10.140.1430		coord: 2..66 e-value: 8.7E-7 score: 31.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	PANTHER	PTHR34191:SF15	BNAA01G32930D PROTEIN	coord: 1..67
IPR039624	Stress-induced protein KIN1/KIN2	PANTHER	PTHR34191	LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEIN	coord: 1..67

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy02g000170	Lcy02g000170	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy02g000170.1.exon1	Lcy02g000170.1.exon1	exon
Lcy02g000170.1.exon2	Lcy02g000170.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy02g000170.1.cds1	Lcy02g000170.1.cds1	CDS
Lcy02g000170.1.cds2	Lcy02g000170.1.cds2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy02g000170.1.utr3p1	Lcy02g000170.1.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy02g000170.1	Lcy02g000170.1-protein	polypeptide