Lcy01g003280.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy01g003280.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr01: 3942069 .. 3942769 (-)
Sequence length	701
RNA-Seq Expression	Lcy01g003280.1
Synteny	Lcy01g003280.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACATTAAGGCTGTTAACTCAAACTCTAAAAGAGAGAGAGGCTGAAAACAATATGTTTGTGAAATATTTGGATGTGCTTTTTCTTGGAGTGGTGCTTCTTAACACTCAAGCCAGCCTTGCTGAACGTAATTTCCCATGGCCTCCGCATTTTGTCCGTGACTACGGCCGCTGGCCACCATATTATCCGCCATATTATCCGCCAGAGACCCACCAGAAAGTGACTCCGGCGACAGAGAACAAGCTTCCCACCACCACAGCCACCGACTCATCGGCGGAGGAGGAGAAATACAAGTCCTACAAACCACCGTACAAGAAATATCCACCTTACAAAAAACCACCTCCCCACCACCACAAGCCACCGCCGTACAAACCACCAACCTCCAACTGAATGGCAGTCACACCAAAGTTTGAAGGGATGGACGACACATAGGCATCCAATAAATAAATACGTGTCAAGAGTGTGTTCGTTTTCGTGTTTAAGATAATATTTGAATGGACGATCATAAGTTAAATATGACGCATCCCGTAGATGCAATATCTATGTATTATTATGCGTCACTTCTTGTATAATATAAGTTTGAATGAATATGAATTTTATCATTTATGCGTTTTTATTTTTTAGTGTATGTGAAGAACTATTTAAATCTTTAGAAAATACTGTTTATATGTCAAATATTTGGAATCTTTATATTGTAATGTG

mRNA sequence

CAACATTAAGGCTGTTAACTCAAACTCTAAAAGAGAGAGAGGCTGAAAACAATATGTTTGTGAAATATTTGGATGTGCTTTTTCTTGGAGTGGTGCTTCTTAACACTCAAGCCAGCCTTGCTGAACGTAATTTCCCATGGCCTCCGCATTTTGTCCGTGACTACGGCCGCTGGCCACCATATTATCCGCCATATTATCCGCCAGAGACCCACCAGAAAGTGACTCCGGCGACAGAGAACAAGCTTCCCACCACCACAGCCACCGACTCATCGGCGGAGGAGGAGAAATACAAGTCCTACAAACCACCGTACAAGAAATATCCACCTTACAAAAAACCACCTCCCCACCACCACAAGCCACCGCCGTACAAACCACCAACCTCCAACTGAATGGCAGTCACACCAAAGTTTGAAGGGATGGACGACACATAGGCATCCAATAAATAAATACGTGTCAAGAGTGTGTTCGTTTTCGTGTTTAAGATAATATTTGAATGGACGATCATAAGTTAAATATGACGCATCCCGTAGATGCAATATCTATGTATTATTATGCGTCACTTCTTGTATAATATAAGTTTGAATGAATATGAATTTTATCATTTATGCGTTTTTATTTTTTAGTGTATGTGAAGAACTATTTAAATCTTTAGAAAATACTGTTTATATGTCAAATATTTGGAATCTTTATATTGTAATGTG

Coding sequence (CDS)

ATGTTTGTGAAATATTTGGATGTGCTTTTTCTTGGAGTGGTGCTTCTTAACACTCAAGCCAGCCTTGCTGAACGTAATTTCCCATGGCCTCCGCATTTTGTCCGTGACTACGGCCGCTGGCCACCATATTATCCGCCATATTATCCGCCAGAGACCCACCAGAAAGTGACTCCGGCGACAGAGAACAAGCTTCCCACCACCACAGCCACCGACTCATCGGCGGAGGAGGAGAAATACAAGTCCTACAAACCACCGTACAAGAAATATCCACCTTACAAAAAACCACCTCCCCACCACCACAAGCCACCGCCGTACAAACCACCAACCTCCAACTGA

Protein sequence

MFVKYLDVLFLGVVLLNTQASLAERNFPWPPHFVRDYGRWPPYYPPYYPPETHQKVTPATENKLPTTTATDSSAEEEKYKSYKPPYKKYPPYKKPPPHHHKPPPYKPPTSN

Homology

The following BLAST results are available for this feature:

BLAST of Lcy01g003280.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy01g003280.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy01g003280.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy01g003280.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..72

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy01g003280	Lcy01g003280	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy01g003280.1.exon1	Lcy01g003280.1.exon1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy01g003280.1.utr3p1	Lcy01g003280.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy01g003280.1.cds1	Lcy01g003280.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy01g003280.1.utr5p1	Lcy01g003280.1.utr5p1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy01g003280.1	Lcy01g003280.1-protein	polypeptide