Lag0042169.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0042169.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Locationchr13: 37751512 .. 37751915 (+)
Sequence length294
RNA-Seq ExpressionLag0042169.1
SyntenyLag0042169.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGTGGATTGGAACTTTCTGGATAAGATCTTGGCTAAGAAGGGTTTTGGTTATCGATGGAGATCATGGGTCTGGAGTTGTATGCGATTAGTTAGGTATTCAATTCTCATTAACAAATGCCCCAAAGTTAGGATTCACGTGTCTCGTGGCAAGGAGACACTCTATCTCCCTTCATCTTTCTTCTCGTGGTGGATGTGTTGAGTAGAATGGTCTCCAGAGGGGTGGAGGGAGATATCATTGAGGGTTTTAAGGTGGGTAAGGAGTGCGTTTCTTTATCTCACCTTCAGTTTGCTGATGATATTATCTTCTTCTGCTCGGGGAAGGAGGAAGCCTTTCTTATCTTAAATCATATGCTCGCCTTCTTTGGGAGGATGTATGGGCTTAAGATTAGTAGAAGTTAA

mRNA sequence

ATGATTGTGGATTGGAACTTTCTGGATAAGATCTTGGCTAAGAAGGGTTTTGGTTATCGATGGAGATCATGGGTCTGGAGTTGTATGCGATTAGTTAGAATGGTCTCCAGAGGGGTGGAGGGAGATATCATTGAGGGTTTTAAGGTGGGTAAGGAGTGCGTTTCTTTATCTCACCTTCAGTTTGCTGATGATATTATCTTCTTCTGCTCGGGGAAGGAGGAAGCCTTTCTTATCTTAAATCATATGCTCGCCTTCTTTGGGAGGATGTATGGGCTTAAGATTAGTAGAAGTTAA

Coding sequence (CDS)

ATGATTGTGGATTGGAACTTTCTGGATAAGATCTTGGCTAAGAAGGGTTTTGGTTATCGATGGAGATCATGGGTCTGGAGTTGTATGCGATTAGTTAGAATGGTCTCCAGAGGGGTGGAGGGAGATATCATTGAGGGTTTTAAGGTGGGTAAGGAGTGCGTTTCTTTATCTCACCTTCAGTTTGCTGATGATATTATCTTCTTCTGCTCGGGGAAGGAGGAAGCCTTTCTTATCTTAAATCATATGCTCGCCTTCTTTGGGAGGATGTATGGGCTTAAGATTAGTAGAAGTTAA

Protein sequence

MIVDWNFLDKILAKKGFGYRWRSWVWSCMRLVRMVSRGVEGDIIEGFKVGKECVSLSHLQFADDIIFFCSGKEEAFLILNHMLAFFGRMYGLKISRS
Homology
[Close]
BLAST of Lag0042169.1 vs. NCBI nr
Match: RVW36772.1 (hypothetical protein CK203_101570 [Vitis vinifera])

HSP 1 Score: 95.9 bits (237), Expect = 2.0e-16
Identity = 44/100 (44.00%), Postives = 63/100 (63.00%), Query Frame = 0 

Query: 3   VDWNFLDKILAKKGFGYRWRSWVWSCMRLV-------RMVSRGVEGDIIEGFKVGKECVS 62
           V W+FLD +L  KGF  RWR W+  C+  V       RM+ +  E +++EGF+VG+    
Sbjct: 51  VSWDFLDHVLEMKGFSLRWRKWMRGCLSSVFLCSPSERMLLKAEERNVLEGFRVGRNRTR 110

Query: 63  LSHLQFADDIIFFCSGKEEAFLILNHMLAFFGRMYGLKIS 96
           +SHLQFADD IFF S +EE  + L ++L  FG + GLK++
Sbjct: 111 VSHLQFADDTIFFSSTREEDMMTLKNVLLVFGHISGLKVN 150

[Close]
BLAST of Lag0042169.1 vs. NCBI nr
Match: RVX02463.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 94.4 bits (233), Expect = 5.9e-16
Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = 0 

Query: 3   VDWNFLDKILAKKGFGYRWRSWVWSCMR-----------LVRMVSRGVEGDIIEGFKVGK 62
           V W+FLD +L KKGF  RWR W+  C+            L RM+ R  E +++EGF+VG+
Sbjct: 300 VKWDFLDHVLEKKGFSPRWRKWMSGCLSSVFLCNLVADVLSRMLMRAEERNMLEGFRVGR 359

Query: 63  ECVSLSHLQFADDIIFFCSGKEEAFLILNHMLAFFGRMYGLKIS 96
               +SHLQFADDIIFF + +EE    L  +L  FG + GLK++
Sbjct: 360 NRTRVSHLQFADDIIFFSNIREEDLQTLKSLLLVFGHISGLKVN 403

[Close]
BLAST of Lag0042169.1 vs. NCBI nr
Match: RVW25786.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 94.4 bits (233), Expect = 5.9e-16
Identity = 45/104 (43.27%), Postives = 62/104 (59.62%), Query Frame = 0 

Query: 3   VDWNFLDKILAKKGFGYRWRSWVWSCMR-----------LVRMVSRGVEGDIIEGFKVGK 62
           V W+FLD +L KKGF  RWR W+  C+            L RM+ R  E +++EGF+VG+
Sbjct: 219 VKWDFLDHVLEKKGFSPRWRKWMSGCLSSVSFAILVNDVLSRMLMRAEERNMLEGFRVGR 278

Query: 63  ECVSLSHLQFADDIIFFCSGKEEAFLILNHMLAFFGRMYGLKIS 96
               +SHLQFADD IFF + +EE    L  +L  FG + GLK++
Sbjct: 279 NRTRVSHLQFADDTIFFSNSREEELQTLKSLLLVFGHISGLKVN 322

[Close]
BLAST of Lag0042169.1 vs. NCBI nr
Match: RVW97471.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 94.0 bits (232), Expect = 7.7e-16
Identity = 45/104 (43.27%), Postives = 62/104 (59.62%), Query Frame = 0 

Query: 3   VDWNFLDKILAKKGFGYRWRSWVWSCMRLVR-----------MVSRGVEGDIIEGFKVGK 62
           V W+FLD +L KKGF  RWR W+  C+ +V            M+ R  E + +EGF+V +
Sbjct: 282 VSWDFLDHVLEKKGFSPRWRKWIRCCLSMVSFAVLVNGNVKGMLLRAEERNSLEGFRVDR 341

Query: 63  ECVSLSHLQFADDIIFFCSGKEEAFLILNHMLAFFGRMYGLKIS 96
               +SHLQFADD IFF S +EE    L  +L  FGR++GLK++
Sbjct: 342 NKTRVSHLQFADDTIFFSSTREEDLQTLKSLLLVFGRIFGLKVN 385

[Close]
BLAST of Lag0042169.1 vs. NCBI nr
Match: RVW32868.1 (DExH-box ATP-dependent RNA helicase DExH14 [Vitis vinifera])

HSP 1 Score: 93.6 bits (231), Expect = 1.0e-15
Identity = 45/104 (43.27%), Postives = 61/104 (58.65%), Query Frame = 0 

Query: 3    VDWNFLDKILAKKGFGYRWRSWVWSCMR-----------LVRMVSRGVEGDIIEGFKVGK 62
            V W FLD +L  KGF  RWR W+  C+            L RM+ R  E +++EGF+VG+
Sbjct: 963  VSWGFLDHVLEMKGFSPRWRQWMRGCLSSVSFAVLVNDILSRMLLRAEERNVLEGFRVGR 1022

Query: 63   ECVSLSHLQFADDIIFFCSGKEEAFLILNHMLAFFGRMYGLKIS 96
                +SHLQFADD IFF S +EE  + L  +L  FG + GLK++
Sbjct: 1023 NRTRVSHLQFADDTIFFSSTREEDMMTLKSVLLVFGHISGLKVN 1066

The following BLAST results are available for this feature:
BLAST of Lag0042169.1 vs. NCBI nr
Match NameE-valueIdentityDescription
RVW36772.12.0e-1644.00hypothetical protein CK203_101570 [Vitis vinifera][more]
RVX02463.15.9e-1644.23Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera][more]
RVW25786.15.9e-1643.27Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera][more]
RVW97471.17.7e-1643.27Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera][more]
RVW32868.11.0e-1543.27DExH-box ATP-dependent RNA helicase DExH14 [Vitis vinifera][more]
BLAST of Lag0042169.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0042169Lag0042169gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0042169.1.exon1Lag0042169.1.exon1exon
Lag0042169.1.exon2Lag0042169.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0042169.1cds.Lag0042169.1CDS
cds.Lag0042169.1cds.Lag0042169.1_2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0042169.1Lag0042169.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity