Lag0042143.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0042143.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr13: 37251244 .. 37254063 (+)
Sequence length1389
RNA-Seq ExpressionLag0042143.1
SyntenyLag0042143.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGCGAAGCCTCCTTCATTCGATGGGCACTCGGATAGTTCTGAAGCAGTGGTAGAATGGACCGCCGCATTGGAAGCATATTTCAATTTCTTGGAGCTAATGCCCAACAGCGGGTCCAAGGAGCTGCCTTTATGCTCAAAGGCCACGCTCGCATTTGGTGGAATGTTGTGGGTCAAACCGAGAACCGCCCAGAGAATCCCATTTCCTGGTTGGGGTTCAAAGGTCTTGTGCGAGACCATTTTGGCTGTCGTTTTGCTGATGTTGAGCAAGAAGCGGAGTTTGTCTCTCTTGTTCAAGGGACCTTGTCTGTGGAGCAGTACGTCAGAAGGTTCGATGAGTTATCTTGTCGAGTCCCGGGTTGGTTGCCACCGAAGAGATTAGGATCAACCGATTCATTAATGGGCTCCGTGCAGAAATTCGAGGTTTGGTCAGGCTTGGTCGACCAACCACCTTTGCAGCAGCCTTAGCGAGCGCTCGGATGTTGGATAGGGACATCCCCAGGACGGATCGGTCCCAAGAGGTTGGCACGTCGTCTGGTGCCAAGAAGAAGAGCGAAGTGGAAGTGCTTGCAGCTAGTCAGAAGGTCAGAAGTTCTCGTCAAGATCTAGCACGTGCACTGAGGAGTTCTTGCCCTGTGTCACCGATGAGGAGCTCAAGGCAGAATACCCAGAGCTTTACGATGTCGATGATTCCGATGATGAAGATAGTTCCTAAGGTGGGGAGTCAGCATTCCCCTCGCTCAAGGTTAGTAATCCCTTCTCTTCTCAAGCATATATCTTCTGGTTCTTAAATCTTGTTCTTATGATTTATGCTTGTCTTGTGCATAACTGTTCGTTGATGTGAGTATGCATGGATCATTCCTTCGTTTTTGTGGCATTGTTTGTCAGCAAATCTTGAAGCTAGAATTGCTAGGGTATCCTTTTCCTTGGTGCCTTGTTTTTAAATTTCCTTGTATAGGCTAGCTTCAAGGGAAAAAGGATTTTCCTAGAATAATTTTGTGATCCAGCTTCTTAGTTGGGATCATGGAATCTTTGTTCCAAAGTGGCTTTCGAAGTCAAGCTTGGGTGTTGCAAGCTTGCTGTGAGGTCTTTGGGCTAAAATAGCTTTGCAACTCTTATGGGTGCTTCGTGGTGCTTAGATCTTCTGTTCCTCAGTTCGTTCAAGGCTCGATTGGTGTCGTCTGGTTTCTAAGGAGTTGAGGATTTCCTTTGAGTTAAGCAGAAGGTTTCCTTAGGATAGTTTGCATCCAATCTCTGATGAAGGTCAATGTATTTTCGTTCAAGAGGATGCCTAAGAATCCAAGTATGATTGAACGTTGCAAGCTTCTGTTGTGTCTTCCGACTCATGGATAGCCTTGCCGCTGCTTGGGTTTCGTGAATCGAGTCTCAAGTTTTTGGACTTGCTCGTGGCGATACTCAATGGTGTTGGTTCTCAAACCAAGAGTTAGAGCAATTCCCTCATGCAGTGGGACATCAATCCAAAGCCAAGGAGATATTGAGAATCAGTATCGAGTCATGACTGCGGCATTAGTTGTCGTCACGACAAGTTACCTTGGTATGCAGTTATAAGGAAGTGCCAACGGTGGTGTTAGTGCCATCTCGTAGTCGTTCTTGAAGGATGGTTTGAAAAAGGTGAGTTGGCGCAGCGGAAGCCGTTCCGAAATAGTTGTTTCCTTCTTCAGTAATGCCTGTTTGAAGTTGGGGTTGAAACTTACCAACTAAGCGAGTTTAAGTTGGTGAAGTTGTTGATGAAGCTTTCGTAGGACCGAGATGAGCATTCTTGAGGTTATTGAAGGTGGGTTGTGGTTATGTCAAGCTCAAAGGTTTAAGCTGACGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGCATGTGTTCCTTCAAGTGGCATCGTTAAAAGCGAGCCTCATGTGTGTCGTGCTAAGGCAAATAGCTTAGCTCCAGCTTTGCTAGTGAAGTTGGCCTTTTGATACACGTGGCTAAATTCCTTGTAGGTCGTGCGAGATCGGAGCTTGGATTCGGTCTTGTTGGGTTGTTTGAGTTCTTGGTGTGAAGTTAGGTTGCTCGTAAGCAAGCTTTGCTTCAAGTGTTGTATGTTCAACACGACTCGTCTCAAGAGTTGTTGTTATGCATACACATCACCTATTCCTTTTGTGCCTCAGTTTTGAGCTTTGGAATCCTAGAAGGAAATGGTTTGGGGAGCAAAAGCCTCTGGTGTTAAATGCCTTGTGAAGTGTGAGATGGAGTCAAGGCCAGTCCACCAGTGAGGTTAGGCGAGCTCTTTCGAGTTCTGGGGTTCAGTTTTGGGTGATCGTGTGTTCTGGCACATGGTGTCGTCGAAAGGTTTCTTTGCTTGTTGATAAGAAGCTTAGCTTGGGTTCATTGGTCCTTATGAGGTCTTGGAGCGCATCGAGCTTGTCGCCTACAGGTTGGCATTACCTCCAGCCATGTCTGCAGTGCATAATGTGTTTCACGTGTTTATGCTAAGGAAGTATGTCCACGACCCTGCTCATGTGTTGAAACCAGAACCATTATCGCTTAATGAGGATTTGGCATATGAGGAGAAGCCTATCAGGGTTTTGGCCAGGGAGGCAAGAGTCTTGAGAAACAGGACTATTGACTTGGTAAAGGTATTGTGGAAGAATCGCCGAATGGAGGAAGCGACCTGGGAAAGGGAAGCTGAGGTTCGAGCCAATTATCCAGAACTCTTCGAGCAGAAAACTTTTGAGGACGAAAGTTCTTAA

mRNA sequence

ATGAAGGCGAAGCCTCCTTCATTCGATGGGCACTCGGATAGTTCTGAAGCAGTGGTAGAATGGACCGCCGCATTGGAAGCATATTTCAATTTCTTGGAGCTAATGCCCAACAGCGGGTCCAAGGAGCTGCCTTTATGCTCAAAGGCCACGCTCGCATTTGGTGGAATGTTGTGGGTCAAACCGAGAACCGCCCAGAGAATCCCATTTCCTGGTTGGGGTTCAAAGGTCTTGTGCGAGACCATTTTGGCTGTCGTTTTGCTGATGTTGAGCAAGAAGCGGAGTTTGTCTCTCTTGTTCAAGGGACCTTGTCTGTGGAGCAGTACGTCAGAAGAAATTCGAGGTTTGGTCAGGCTTGGTCGACCAACCACCTTTGCAGCAGCCTTAGCGAGCGCTCGGATGTTGGATAGGGACATCCCCAGGACGGATCGGTCCCAAGAGGTTGGCACGTCGTCTGGTGCCAAGAAGAAGAGCGAAGTGGAAGTGCTTGCAGCTAGTCAGAAGGTCAGAAGTTCTCGTCAAGATCTAGCACGTGCACTGAGGAGTTCTTGCCCTGTGTCACCGATGAGGAGCTCAAGGCAGAATACCCAGAGCTTTACGATGTCGATGATTCCGATGATGAAGATAGTTCCTAAGGTGGGGAGTCAGCATTCCCCTCGCTCAAGCTTCTTAGTTGGGATCATGGAATCTTTGTTCCAAAGTGGCTTTCGAAGTCAAGCTTGGGTGTTGCAAGCTTGCTGTGAGATCTTCTGTTCCTCAGTTCGTTCAAGGCTCGATTGGTGTCGTCTGGTTTCTAAGGAGTTGAGGATTTCCTTTGAGTTAAGCAGAAGTGGGACATCAATCCAAAGCCAAGGAGATATTGAGAATCAGTATCGAGTCATGACTGCGGCATTAGTTGTCGTCACGACAAGTTACCTTGGTCGTGCGAGATCGGAGCTTGGATTCGGTCTTGTTGGGTTGTTTGAGTTCTTGAAGGAAATGGTTTGGGGAGCAAAAGCCTCTGGTGTTAAATGCCTTGTGAAGTGTGAGATGGAGTCAAGGCCAGTCTTGGAGCGCATCGAGCTTGTCGCCTACAGGTTGGCATTACCTCCAGCCATGTCTGCAGTGCATAATGTGTTTCACGTGTTTATGCTAAGGAAGTATGTCCACGACCCTGCTCATGTGTTGAAACCAGAACCATTATCGCTTAATGAGGATTTGGCATATGAGGAGAAGCCTATCAGGGTTTTGGCCAGGGAGGCAAGAGTCTTGAGAAACAGGACTATTGACTTGGTAAAGGTATTGTGGAAGAATCGCCGAATGGAGGAAGCGACCTGGGAAAGGGAAGCTGAGGTTCGAGCCAATTATCCAGAACTCTTCGAGCAGAAAACTTTTGAGGACGAAAGTTCTTAA

Coding sequence (CDS)

ATGAAGGCGAAGCCTCCTTCATTCGATGGGCACTCGGATAGTTCTGAAGCAGTGGTAGAATGGACCGCCGCATTGGAAGCATATTTCAATTTCTTGGAGCTAATGCCCAACAGCGGGTCCAAGGAGCTGCCTTTATGCTCAAAGGCCACGCTCGCATTTGGTGGAATGTTGTGGGTCAAACCGAGAACCGCCCAGAGAATCCCATTTCCTGGTTGGGGTTCAAAGGTCTTGTGCGAGACCATTTTGGCTGTCGTTTTGCTGATGTTGAGCAAGAAGCGGAGTTTGTCTCTCTTGTTCAAGGGACCTTGTCTGTGGAGCAGTACGTCAGAAGAAATTCGAGGTTTGGTCAGGCTTGGTCGACCAACCACCTTTGCAGCAGCCTTAGCGAGCGCTCGGATGTTGGATAGGGACATCCCCAGGACGGATCGGTCCCAAGAGGTTGGCACGTCGTCTGGTGCCAAGAAGAAGAGCGAAGTGGAAGTGCTTGCAGCTAGTCAGAAGGTCAGAAGTTCTCGTCAAGATCTAGCACGTGCACTGAGGAGTTCTTGCCCTGTGTCACCGATGAGGAGCTCAAGGCAGAATACCCAGAGCTTTACGATGTCGATGATTCCGATGATGAAGATAGTTCCTAAGGTGGGGAGTCAGCATTCCCCTCGCTCAAGCTTCTTAGTTGGGATCATGGAATCTTTGTTCCAAAGTGGCTTTCGAAGTCAAGCTTGGGTGTTGCAAGCTTGCTGTGAGATCTTCTGTTCCTCAGTTCGTTCAAGGCTCGATTGGTGTCGTCTGGTTTCTAAGGAGTTGAGGATTTCCTTTGAGTTAAGCAGAAGTGGGACATCAATCCAAAGCCAAGGAGATATTGAGAATCAGTATCGAGTCATGACTGCGGCATTAGTTGTCGTCACGACAAGTTACCTTGGTCGTGCGAGATCGGAGCTTGGATTCGGTCTTGTTGGGTTGTTTGAGTTCTTGAAGGAAATGGTTTGGGGAGCAAAAGCCTCTGGTGTTAAATGCCTTGTGAAGTGTGAGATGGAGTCAAGGCCAGTCTTGGAGCGCATCGAGCTTGTCGCCTACAGGTTGGCATTACCTCCAGCCATGTCTGCAGTGCATAATGTGTTTCACGTGTTTATGCTAAGGAAGTATGTCCACGACCCTGCTCATGTGTTGAAACCAGAACCATTATCGCTTAATGAGGATTTGGCATATGAGGAGAAGCCTATCAGGGTTTTGGCCAGGGAGGCAAGAGTCTTGAGAAACAGGACTATTGACTTGGTAAAGGTATTGTGGAAGAATCGCCGAATGGAGGAAGCGACCTGGGAAAGGGAAGCTGAGGTTCGAGCCAATTATCCAGAACTCTTCGAGCAGAAAACTTTTGAGGACGAAAGTTCTTAA

Protein sequence

MKAKPPSFDGHSDSSEAVVEWTAALEAYFNFLELMPNSGSKELPLCSKATLAFGGMLWVKPRTAQRIPFPGWGSKVLCETILAVVLLMLSKKRSLSLLFKGPCLWSSTSEEIRGLVRLGRPTTFAAALASARMLDRDIPRTDRSQEVGTSSGAKKKSEVEVLAASQKVRSSRQDLARALRSSCPVSPMRSSRQNTQSFTMSMIPMMKIVPKVGSQHSPRSSFLVGIMESLFQSGFRSQAWVLQACCEIFCSSVRSRLDWCRLVSKELRISFELSRSGTSIQSQGDIENQYRVMTAALVVVTTSYLGRARSELGFGLVGLFEFLKEMVWGAKASGVKCLVKCEMESRPVLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIRVLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRANYPELFEQKTFEDESS
Homology
[Close]
BLAST of Lag0042143.1 vs. NCBI nr
Match: XP_022153199.1 (uncharacterized protein LOC111020755 [Momordica charantia])

HSP 1 Score: 172.6 bits (436), Expect = 8.2e-39
Identity = 81/114 (71.05%), Postives = 99/114 (86.84%), Query Frame = 0 

Query: 348 VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIR 407
           +LERI  VAYRLALPP+++AVHNVFHV+MLRKY+HDP+HVL PEPL L+E L YEE P++
Sbjct: 56  ILERIGPVAYRLALPPSLAAVHNVFHVYMLRKYIHDPSHVLDPEPLQLDESLCYEEVPVK 115

Query: 408 VLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRANYPELFEQKTFEDES 462
           VLARE ++LRNRTI LVKVLW+N ++EEATWERE +++  YPELFEQ TF DES
Sbjct: 116 VLARETKLLRNRTIRLVKVLWRNHQLEEATWEREDDIKVRYPELFEQSTFGDES 169

[Close]
BLAST of Lag0042143.1 vs. NCBI nr
Match: XP_022149797.1 (uncharacterized protein LOC111018144 [Momordica charantia])

HSP 1 Score: 171.0 bits (432), Expect = 2.4e-38
Identity = 83/114 (72.81%), Postives = 100/114 (87.72%), Query Frame = 0 

Query: 348 VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIR 407
           +LERI  VAYRLALPP++SAVHNVFHV MLRKYVHDP+HVL  EPL ++E L Y+E PI 
Sbjct: 101 ILERIGPVAYRLALPPSLSAVHNVFHVSMLRKYVHDPSHVLDYEPLQVDETLCYKEVPIG 160

Query: 408 VLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRANYPELFEQKTFEDES 462
           ++ARE +VLRNR IDLVKVLW+N ++EEATWERE E+RA+YPELFEQ+TFEDE+
Sbjct: 161 IVARETKVLRNRVIDLVKVLWRNHQIEEATWEREDEIRAHYPELFEQRTFEDEN 214

[Close]
BLAST of Lag0042143.1 vs. NCBI nr
Match: XP_022155143.1 (uncharacterized protein LOC111022284 [Momordica charantia])

HSP 1 Score: 164.5 bits (415), Expect = 2.2e-36
Identity = 80/114 (70.18%), Postives = 97/114 (85.09%), Query Frame = 0 

Query: 348 VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIR 407
           + ERI  VAY LALPP+++AVHNVFHV MLRKYVHDP+HVL  EPL ++E L Y+E PI 
Sbjct: 170 IFERIGPVAYWLALPPSLNAVHNVFHVSMLRKYVHDPSHVLDYEPLQVDETLCYKEVPIE 229

Query: 408 VLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRANYPELFEQKTFEDES 462
           ++ARE +VLRNR IDLVKVLW+N ++EEATWERE E+RA YPELFE++TFEDES
Sbjct: 230 IVARETKVLRNRAIDLVKVLWRNYQVEEATWEREDEIRARYPELFERRTFEDES 283

[Close]
BLAST of Lag0042143.1 vs. NCBI nr
Match: XP_022158869.1 (uncharacterized protein LOC111025333 [Momordica charantia])

HSP 1 Score: 164.1 bits (414), Expect = 2.9e-36
Identity = 77/114 (67.54%), Postives = 97/114 (85.09%), Query Frame = 0 

Query: 348 VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIR 407
           +LERI  VAYRLALPP+++AVHNVFHV MLR+Y+HDP+HVL PEPL L+E L YEE P++
Sbjct: 16  ILERIGPVAYRLALPPSLAAVHNVFHVSMLRRYIHDPSHVLDPEPLQLDESLCYEEVPVK 75

Query: 408 VLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRANYPELFEQKTFEDES 462
           +LA+E ++LRN TI LVKVLW+N ++EEATWERE +++A YPEL EQ TF DES
Sbjct: 76  ILAKETKLLRNLTIRLVKVLWRNHQVEEATWEREDDIKARYPELLEQSTFGDES 129

[Close]
BLAST of Lag0042143.1 vs. NCBI nr
Match: XP_022157418.1 (uncharacterized protein LOC111024119 [Momordica charantia])

HSP 1 Score: 163.7 bits (413), Expect = 3.8e-36
Identity = 76/114 (66.67%), Postives = 97/114 (85.09%), Query Frame = 0 

Query: 348 VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIR 407
           +LERI+ VAYRLALPP+++AVHNVFHV MLR+Y+HDP+HVL PEPL L+E L YE  P++
Sbjct: 56  ILERIDRVAYRLALPPSLAAVHNVFHVSMLRRYIHDPSHVLDPEPLQLDESLCYEVVPVK 115

Query: 408 VLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRANYPELFEQKTFEDES 462
           +LA E ++LRNRTI LV VLW+N +++EATWERE +++A YPEL EQ TFEDES
Sbjct: 116 ILAGETKLLRNRTIRLVMVLWRNHQVDEATWEREDDIKARYPELLEQSTFEDES 169

[Close]
BLAST of Lag0042143.1 vs. ExPASy TrEMBL
Match: A0A6J1DIC9 (uncharacterized protein LOC111020755 OS=Momordica charantia OX=3673 GN=LOC111020755 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 4.0e-39
Identity = 81/114 (71.05%), Postives = 99/114 (86.84%), Query Frame = 0 

Query: 348 VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIR 407
           +LERI  VAYRLALPP+++AVHNVFHV+MLRKY+HDP+HVL PEPL L+E L YEE P++
Sbjct: 56  ILERIGPVAYRLALPPSLAAVHNVFHVYMLRKYIHDPSHVLDPEPLQLDESLCYEEVPVK 115

Query: 408 VLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRANYPELFEQKTFEDES 462
           VLARE ++LRNRTI LVKVLW+N ++EEATWERE +++  YPELFEQ TF DES
Sbjct: 116 VLARETKLLRNRTIRLVKVLWRNHQLEEATWEREDDIKVRYPELFEQSTFGDES 169

[Close]
BLAST of Lag0042143.1 vs. ExPASy TrEMBL
Match: A0A6J1D8Z5 (uncharacterized protein LOC111018144 OS=Momordica charantia OX=3673 GN=LOC111018144 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.2e-38
Identity = 83/114 (72.81%), Postives = 100/114 (87.72%), Query Frame = 0 

Query: 348 VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIR 407
           +LERI  VAYRLALPP++SAVHNVFHV MLRKYVHDP+HVL  EPL ++E L Y+E PI 
Sbjct: 101 ILERIGPVAYRLALPPSLSAVHNVFHVSMLRKYVHDPSHVLDYEPLQVDETLCYKEVPIG 160

Query: 408 VLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRANYPELFEQKTFEDES 462
           ++ARE +VLRNR IDLVKVLW+N ++EEATWERE E+RA+YPELFEQ+TFEDE+
Sbjct: 161 IVARETKVLRNRVIDLVKVLWRNHQIEEATWEREDEIRAHYPELFEQRTFEDEN 214

[Close]
BLAST of Lag0042143.1 vs. ExPASy TrEMBL
Match: A0A6J1DM68 (uncharacterized protein LOC111022284 OS=Momordica charantia OX=3673 GN=LOC111022284 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.1e-36
Identity = 80/114 (70.18%), Postives = 97/114 (85.09%), Query Frame = 0 

Query: 348 VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIR 407
           + ERI  VAY LALPP+++AVHNVFHV MLRKYVHDP+HVL  EPL ++E L Y+E PI 
Sbjct: 170 IFERIGPVAYWLALPPSLNAVHNVFHVSMLRKYVHDPSHVLDYEPLQVDETLCYKEVPIE 229

Query: 408 VLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRANYPELFEQKTFEDES 462
           ++ARE +VLRNR IDLVKVLW+N ++EEATWERE E+RA YPELFE++TFEDES
Sbjct: 230 IVARETKVLRNRAIDLVKVLWRNYQVEEATWEREDEIRARYPELFERRTFEDES 283

[Close]
BLAST of Lag0042143.1 vs. ExPASy TrEMBL
Match: A0A6J1E0P3 (uncharacterized protein LOC111025333 OS=Momordica charantia OX=3673 GN=LOC111025333 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.4e-36
Identity = 77/114 (67.54%), Postives = 97/114 (85.09%), Query Frame = 0 

Query: 348 VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIR 407
           +LERI  VAYRLALPP+++AVHNVFHV MLR+Y+HDP+HVL PEPL L+E L YEE P++
Sbjct: 16  ILERIGPVAYRLALPPSLAAVHNVFHVSMLRRYIHDPSHVLDPEPLQLDESLCYEEVPVK 75

Query: 408 VLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRANYPELFEQKTFEDES 462
           +LA+E ++LRN TI LVKVLW+N ++EEATWERE +++A YPEL EQ TF DES
Sbjct: 76  ILAKETKLLRNLTIRLVKVLWRNHQVEEATWEREDDIKARYPELLEQSTFGDES 129

[Close]
BLAST of Lag0042143.1 vs. ExPASy TrEMBL
Match: A0A6J1DTB3 (uncharacterized protein LOC111024119 OS=Momordica charantia OX=3673 GN=LOC111024119 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.8e-36
Identity = 76/114 (66.67%), Postives = 97/114 (85.09%), Query Frame = 0 

Query: 348 VLERIELVAYRLALPPAMSAVHNVFHVFMLRKYVHDPAHVLKPEPLSLNEDLAYEEKPIR 407
           +LERI+ VAYRLALPP+++AVHNVFHV MLR+Y+HDP+HVL PEPL L+E L YE  P++
Sbjct: 56  ILERIDRVAYRLALPPSLAAVHNVFHVSMLRRYIHDPSHVLDPEPLQLDESLCYEVVPVK 115

Query: 408 VLAREARVLRNRTIDLVKVLWKNRRMEEATWEREAEVRANYPELFEQKTFEDES 462
           +LA E ++LRNRTI LV VLW+N +++EATWERE +++A YPEL EQ TFEDES
Sbjct: 116 ILAGETKLLRNRTIRLVMVLWRNHQVDEATWEREDDIKARYPELLEQSTFEDES 169

The following BLAST results are available for this feature:
BLAST of Lag0042143.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022153199.18.2e-3971.05uncharacterized protein LOC111020755 [Momordica charantia][more]
XP_022149797.12.4e-3872.81uncharacterized protein LOC111018144 [Momordica charantia][more]
XP_022155143.12.2e-3670.18uncharacterized protein LOC111022284 [Momordica charantia][more]
XP_022158869.12.9e-3667.54uncharacterized protein LOC111025333 [Momordica charantia][more]
XP_022157418.13.8e-3666.67uncharacterized protein LOC111024119 [Momordica charantia][more]
BLAST of Lag0042143.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0042143.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DIC94.0e-3971.05uncharacterized protein LOC111020755 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A6J1D8Z51.2e-3872.81uncharacterized protein LOC111018144 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A6J1DM681.1e-3670.18uncharacterized protein LOC111022284 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1E0P31.4e-3667.54uncharacterized protein LOC111025333 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DTB31.8e-3666.67uncharacterized protein LOC111024119 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
BLAST of Lag0042143.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46148FAMILY NOT NAMEDcoord: 326..452
NoneNo IPR availablePANTHERPTHR46148:SF33OS05G0296332 PROTEINcoord: 326..452

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0042143Lag0042143gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0042143.1.exon1Lag0042143.1.exon1exon
Lag0042143.1.exon2Lag0042143.1.exon2exon
Lag0042143.1.exon3Lag0042143.1.exon3exon
Lag0042143.1.exon4Lag0042143.1.exon4exon
Lag0042143.1.exon5Lag0042143.1.exon5exon
Lag0042143.1.exon6Lag0042143.1.exon6exon
Lag0042143.1.exon7Lag0042143.1.exon7exon
Lag0042143.1.exon8Lag0042143.1.exon8exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0042143.1cds.Lag0042143.1CDS
cds.Lag0042143.1cds.Lag0042143.1_2CDS
cds.Lag0042143.1cds.Lag0042143.1_3CDS
cds.Lag0042143.1cds.Lag0042143.1_4CDS
cds.Lag0042143.1cds.Lag0042143.1_5CDS
cds.Lag0042143.1cds.Lag0042143.1_6CDS
cds.Lag0042143.1cds.Lag0042143.1_7CDS
cds.Lag0042143.1cds.Lag0042143.1_8CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0042143.1Lag0042143.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding