Lag0041346.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0041346.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotransposon gag protein
Locationchr13: 16156844 .. 16161525 (-)
Sequence length2331
RNA-Seq ExpressionLag0041346.1
SyntenyLag0041346.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTATGGCCGCGACAAAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCATCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCGTCCCGTCACGTATGAAGAGGAAATTCTCTGTTCTCATAACTACAGAAGGTTCATTGAAGGTGAAGCCAAATCTCATTGTCTTGACTAATCCTATAAATGAAGGATCTGATCAAGACCATGATAAGGATAAGAGCTTTTAAAATATAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGAGCAAAAATCTTGAACTACGTTATGACTTGATCCCTATTCCATAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTATAAAAAAAAAAAAAGGTTCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTCTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGTGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTTCCCCAAGTTCGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTTTTCAAGGTCGAAAGTTCTCACTCTCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGTAGTTCCTTCCCCCAAGTTTGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGAATCTTACGCGCTTTGCTGCAGTTCCTTCCTCACAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCAAGCGCTGTGATTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATACGCTTCGTTGCTCCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAACTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCCTCTCTCCACTGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCATGCTGCAGCTCCTTCCTCCAAGTTCGAATGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTACTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGCAGTTGACGGCGTTCGCTTCGCTTCATCTTCAAAAATTGACTGTTGATAACTTCACTTCATATTCAAAAGTTGACGGTTGAAGTCTTCGCTACATCTGCAAAGATGAACAACTTTAGTGTTGCCTTTATCTTGAAAGTGTCCAGACTGGAAGATGCATCTTAGCTGCAAGTTAAAAAAATGCTTGATATCAAACCACAAAAAAAAAGAAAGAAAGACAATAAAAGTGTTGTTAAAAAAAACGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGCCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAAGCTGATGACGACCATGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTGACCACCCGTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAGCTGATGACGATCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAATTTGGTGACGACCGTTGCACGAAGCTTGCACATTCAAGGAAGAAAGAAACAAATTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAACAAAAATTAAGAAAAAAAAAACGAAAAGTAAAAATTAAAAAAAAAAAACGAAAAATTAAAAATAAAAAATAAAAAATAAAAAGAGAAGAAATTTTCCTACTTGGATCCCTTCTTGAATGCTCTCTGCAATTGAGGTGTGCTCTCTCTACTAAAGTTCAGTCTTATTTATAGGAGGGAGTTTTAAGTTCAAATCAAAGGTTTAGATAAAGATTTGACTCAAATGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGACACCGTATTTGGTCCGGCTTGATTTTGGTAATAATGTTTGAAGTTTTTCAATATTTGGAAGTCGATTTGTTTTTGGTATGTAAAAGAGCATAACTCAAGTGGCATAAAGTCGTATTAACAATCAAAGGTCTTTGGTTCGAATCTCTCCTTGCATATTATCAAAATTTGTTTTTTAGTTTTCATGATTCAATTTTCATTTTCATCTTTTTTTTTTTTGTTTTATTTAATTTATTTCTTTATTTTTTTATTTATTTTTTATTTTTTTTTTTATTTTATTTATTATTTTTTTACTCTTATTCCATTCTCATTCTCATCTCCATTTCTTTTTTCTCTCCTTCTTCCTTCTCCACTCCATTCTTTCCCCAACTTCTCCACTCCCCCTTCCTTCTCCCAACCTCCCATTCTTTCCCCATCTTTCTCAACTCACTCCCCCTCTTTCTCCCAACCTCCATTCTTCCCCATCTTTCTCACTCACTTCCCCTTCCTTCTCCCAACCTCTCATTCTTTCCCCATCTTTCTCAACTCACTCCCCTTCCTTCTCCCAACCTCTCATTCTTTCCCCATCTTTCTCACTCACTCCCCCTCTCTCCCAACCTCCCATTCTTCCCATCTTTCTCAACTCACTCCCCTCTTTCTCCAACCTCTCATTCTTTCCCCATTTTTCTCAACCCCTTCCTCCAAGCTCTACTATATAATGAGAGCTTATGGAGGATGGAGGAAAAAAAAGAACAAGAAGGACACAACAAACAAGAAGAATAGTGAGAGAGCTTAGAGAGAGAAAGTGAGTTTGAGAGGGAAAATAGAGTTTGAAGAAGGATTTTCCAAAAACCAAAGCTACCGCCGCCAGTCACCGCCGTACCGCCACCACCAGTCACCGTCACACCACCGCCGCCGCCACTGCCGTCGTTGCCGCCGCCACTGCCGCCGTTGCCGCCACCGTGCCGCCGCTTTCCGTTGATTCCAACAAAGTTCCTAAGTGA

mRNA sequence

ATGAGTATGGCCGCGACAAAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCATCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCGTCCCGTCACGTATGAAGAGGAAATTCTCTGTTCTCATAACTACAGAAGGTTCATTGAAGTTCGAAGGTTCTTCGTTCTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGTGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTTCCCCAAGTTCGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTTTTCAAGGTCGAAAGTTCTCACTCTCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGTAGTTCCTTCCCCCAAGTTTGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGAATCTTACGCGCTTTGCTGCAGTTCCTTCCTCACAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATACGCTTCGTTGCTCCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAACTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCCTCTCTCCACTGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCATGCTGCAGCTCCTTCCTCCAAGTTCGAATGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTACTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGCAGTTGACGGCGTTCGCTTCGCTTCATCTTCAAAAATTGACTGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGCCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAAGCTGATGACGACCATGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAAGCTGATGACGACCGTGGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTGACCACCCGTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGACAGGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGACAGGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAGCTGATGACGATCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGAGTTTGAAGAAGGATTTTCCAAAAACCAAAGCTACCGCCGCCAGTCACCGCCGTACCGCCACCACCAGTCACCGTCACACCACCGCCGCCGCCACTGCCGTCGTTGCCGCCGCCACTGCCGCCGTTGCCGCCACCGTGCCGCCGCTTTCCGTTGATTCCAACAAAGTTCCTAAGTGA

Coding sequence (CDS)

ATGAGTATGGCCGCGACAAAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCATCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCGTCCCGTCACGTATGAAGAGGAAATTCTCTGTTCTCATAACTACAGAAGGTTCATTGAAGTTCGAAGGTTCTTCGTTCTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGTGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTTCCCCAAGTTCGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTTTTCAAGGTCGAAAGTTCTCACTCTCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGTAGTTCCTTCCCCCAAGTTTGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGAATCTTACGCGCTTTGCTGCAGTTCCTTCCTCACAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATACGCTTCGTTGCTCCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAACTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCCTCTCTCCACTGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCATGCTGCAGCTCCTTCCTCCAAGTTCGAATGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTACTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGCAGTTGACGGCGTTCGCTTCGCTTCATCTTCAAAAATTGACTGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGCCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAAGCTGATGACGACCATGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAAGCTGATGACGACCGTGGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTGACCACCCGTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGACAGGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGACAGGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAGCTGATGACGATCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGAGTTTGAAGAAGGATTTTCCAAAAACCAAAGCTACCGCCGCCAGTCACCGCCGTACCGCCACCACCAGTCACCGTCACACCACCGCCGCCGCCACTGCCGTCGTTGCCGCCGCCACTGCCGCCGTTGCCGCCACCGTGCCGCCGCTTTCCGTTGATTCCAACAAAGTTCCTAAGTGA

Protein sequence

MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSVPSRMKRKFSVLITTEGSLKFEGSSFYPAALFLLQVRGFSVVRLLRCSSSKCEGSYVVRCCIVPSSLKFDGSHAALLEFLSPSSKVLTRSVAVPSFQGRKFSLSALQFFLPKFEGSRTSLQFLLPNSKVLTRFALQFLPPSSKVLTRFAVVPSPKFEGSHALRCNSFLQVQRFSRASVKFLPPSLKVLTRFAAVPSPQVRRILRALLQFLPHSSKVLTRFAAVPSPQVRRFSRRFAAVPSSKFEGSHIASLRAALRCSSFLQVRSSFLQVRRFSYASLLLPPSSKVLSRAAATPSSKFEGSLTRFARSFSKFEGASLHCSFLQVRRFSCASLLPSSKFEGSLMLQLLPPSSNVPSRASLAPSPSSKALLSTTPSPSSKALLSTAPSPSSKVLLSTPLFEGSPLRFSFSKFEGSPLLLFKCLAAVDVLVPLHLQMLAVDGVRFASSSKIDCGEITASEKLMTTVVTTPAGNYSHQSDWSRQVVKSLQVKADDDHGNYSHQSDWSRQVVKSLQVKADDDRGGEITASEKLMTTVVTTRAGNYSHQSDWSRQTGGEITASEKLMTTVVTTPAGNYSHQSDWSRQTGGEITASEKLMTTVVTTPAGNYSHQSDWSRQVVKSLQVKLMTIVVTTPAGNYSHQSDWSRQSLKKDFPKTKATAASHRRTATTSHRHTTAAATAVVAAATAAVAATVPPLSVDSNKVPK
Homology
[Close]
BLAST of Lag0041346.1 vs. NCBI nr
Match: KAA0036008.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 4.9e-20
Identity = 62/94 (65.96%), Postives = 72/94 (76.60%), Query Frame = 0 

Query: 1   MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  +EENQC MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + 
Sbjct: 92  LSMATKEEENQCPMSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSFKA 151

Query: 61  KLFDEVNSDKKLHSSVPSRMKRKFSVLITTEGSL 95
           K F E N D K+HS VPSRMKRK SV I TEGSL
Sbjct: 152 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 185

[Close]
BLAST of Lag0041346.1 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 8.4e-20
Identity = 62/94 (65.96%), Postives = 72/94 (76.60%), Query Frame = 0 

Query: 1   MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  +EENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 151 LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 210

Query: 61  KLFDEVNSDKKLHSSVPSRMKRKFSVLITTEGSL 95
           K F E N D K+HS VPSRMKRK SV I TEGSL
Sbjct: 211 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 244

[Close]
BLAST of Lag0041346.1 vs. NCBI nr
Match: KAA0050734.1 (gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 8.4e-20
Identity = 62/94 (65.96%), Postives = 72/94 (76.60%), Query Frame = 0 

Query: 1   MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  +EENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 92  LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 151

Query: 61  KLFDEVNSDKKLHSSVPSRMKRKFSVLITTEGSL 95
           K F E N D K+HS VPSRMKRK SV I TEGSL
Sbjct: 152 KPFHEENGDDKIHSRVPSRMKRKLSVDINTEGSL 185

[Close]
BLAST of Lag0041346.1 vs. NCBI nr
Match: TYK16519.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 2.4e-19
Identity = 61/94 (64.89%), Postives = 71/94 (75.53%), Query Frame = 0 

Query: 1   MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  +EENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TN+Q KR+M + + 
Sbjct: 422 LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNNQQKREMKSFKA 481

Query: 61  KLFDEVNSDKKLHSSVPSRMKRKFSVLITTEGSL 95
           K F E N D K+HS VPSRMKRK SV I TEGSL
Sbjct: 482 KPFHEQNDDNKIHSRVPSRMKRKLSVDINTEGSL 515

[Close]
BLAST of Lag0041346.1 vs. NCBI nr
Match: TYK18884.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 3.2e-19
Identity = 60/94 (63.83%), Postives = 72/94 (76.60%), Query Frame = 0 

Query: 1   MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  +EENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 92  LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKA 151

Query: 61  KLFDEVNSDKKLHSSVPSRMKRKFSVLITTEGSL 95
           K F E N D K+HS VPSRMKRK S+ I T+GSL
Sbjct: 152 KPFHEENDDDKIHSRVPSRMKRKLSIDINTKGSL 185

[Close]
BLAST of Lag0041346.1 vs. ExPASy TrEMBL
Match: A0A5A7SZJ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18735G00010 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.4e-20
Identity = 62/94 (65.96%), Postives = 72/94 (76.60%), Query Frame = 0 

Query: 1   MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  +EENQC MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + 
Sbjct: 92  LSMATKEEENQCPMSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSFKA 151

Query: 61  KLFDEVNSDKKLHSSVPSRMKRKFSVLITTEGSL 95
           K F E N D K+HS VPSRMKRK SV I TEGSL
Sbjct: 152 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 185

[Close]
BLAST of Lag0041346.1 vs. ExPASy TrEMBL
Match: A0A5D3BBF9 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00250 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.0e-20
Identity = 62/94 (65.96%), Postives = 72/94 (76.60%), Query Frame = 0 

Query: 1   MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  +EENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 92  LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 151

Query: 61  KLFDEVNSDKKLHSSVPSRMKRKFSVLITTEGSL 95
           K F E N D K+HS VPSRMKRK SV I TEGSL
Sbjct: 152 KPFHEENGDDKIHSRVPSRMKRKLSVDINTEGSL 185

[Close]
BLAST of Lag0041346.1 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.0e-20
Identity = 62/94 (65.96%), Postives = 72/94 (76.60%), Query Frame = 0 

Query: 1   MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  +EENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 151 LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 210

Query: 61  KLFDEVNSDKKLHSSVPSRMKRKFSVLITTEGSL 95
           K F E N D K+HS VPSRMKRK SV I TEGSL
Sbjct: 211 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 244

[Close]
BLAST of Lag0041346.1 vs. ExPASy TrEMBL
Match: A0A5D3D209 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003310 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.2e-19
Identity = 61/94 (64.89%), Postives = 71/94 (75.53%), Query Frame = 0 

Query: 1   MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  +EENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TN+Q KR+M + + 
Sbjct: 422 LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNNQQKREMKSFKA 481

Query: 61  KLFDEVNSDKKLHSSVPSRMKRKFSVLITTEGSL 95
           K F E N D K+HS VPSRMKRK SV I TEGSL
Sbjct: 482 KPFHEQNDDNKIHSRVPSRMKRKLSVDINTEGSL 515

[Close]
BLAST of Lag0041346.1 vs. ExPASy TrEMBL
Match: A0A5D3D5Q0 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00920 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-19
Identity = 60/94 (63.83%), Postives = 72/94 (76.60%), Query Frame = 0 

Query: 1   MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  +EENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 92  LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKA 151

Query: 61  KLFDEVNSDKKLHSSVPSRMKRKFSVLITTEGSL 95
           K F E N D K+HS VPSRMKRK S+ I T+GSL
Sbjct: 152 KPFHEENDDDKIHSRVPSRMKRKLSIDINTKGSL 185

The following BLAST results are available for this feature:
BLAST of Lag0041346.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0036008.14.9e-2065.96Retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0044978.18.4e-2065.96retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0050734.18.4e-2065.96gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease pol... [more]
TYK16519.12.4e-1964.89retrotransposon gag protein [Cucumis melo var. makuwa][more]
TYK18884.13.2e-1963.83gag protease polyprotein [Cucumis melo var. makuwa][more]
BLAST of Lag0041346.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0041346.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SZJ72.4e-2065.96Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5D3BBF94.0e-2065.96Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7TQ064.0e-2065.96Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5D3D2091.2e-1964.89Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5D3D5Q01.5e-1963.83Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
BLAST of Lag0041346.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 439..463
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 716..730
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 708..745
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..45

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0041346Lag0041346gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0041346.1.exon9Lag0041346.1.exon9exon
Lag0041346.1.exon8Lag0041346.1.exon8exon
Lag0041346.1.exon7Lag0041346.1.exon7exon
Lag0041346.1.exon6Lag0041346.1.exon6exon
Lag0041346.1.exon5Lag0041346.1.exon5exon
Lag0041346.1.exon4Lag0041346.1.exon4exon
Lag0041346.1.exon3Lag0041346.1.exon3exon
Lag0041346.1.exon2Lag0041346.1.exon2exon
Lag0041346.1.exon1Lag0041346.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0041346.1cds.Lag0041346.1_9CDS
cds.Lag0041346.1cds.Lag0041346.1_8CDS
cds.Lag0041346.1cds.Lag0041346.1_7CDS
cds.Lag0041346.1cds.Lag0041346.1_6CDS
cds.Lag0041346.1cds.Lag0041346.1_5CDS
cds.Lag0041346.1cds.Lag0041346.1_4CDS
cds.Lag0041346.1cds.Lag0041346.1_3CDS
cds.Lag0041346.1cds.Lag0041346.1_2CDS
cds.Lag0041346.1cds.Lag0041346.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0041346.1Lag0041346.1-proteinpolypeptide