Lag0041340.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0041340.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr13: 16020297 .. 16021276 (-)
Sequence length843
RNA-Seq ExpressionLag0041340.1
SyntenyLag0041340.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAATTCCGAACAAAATCAAGATATTCTGCTGGAGAATGTATCATGACTATCTGCCTTCAGTGTCAAATTTGCGCAGAAGAGGGATGGATTTTCAGGAGGAATGTCCCAGATGTAAGGTTAAGGAGGAAACAACTTTCCATGCCATATGGGAATGTAAAGCAGTGAGGAAATGTTGGCAGAAATCGCCATTTTTTCCGAGACCAGGTCCTAATTCCATTCGTTGTGCTGCAGATCTATTGTGGTGGTGCTGGAGGAATATGCTAGGTGCCCAATTTGAGGAGTTTGTGGTGCTGTCTTGGTGGATTTGGAATAGAAGGAACAAGGAGTTTTTTGGAGGGAGCTTTAATTCGGAGATGGAGGATGGAGGGTGGGGTTGGGTTGTGGAGTACTTAGCCCATTTTCGGGCATTCCAGGGGAAAGGGGACATGAGAGGGGCGGGTATGAGGGTGGTTTCGGGTTGGAGCCCTCCGATTTTTCCTAATTATAAACTCAACACAGATGTTGCAGTTGATTCAGAGATGCAATTGAGTAGTATGAGAGCGGTGGTGCGAAATGAGAGGGGAGAAGTTATGCTTACCTTAATGAGGAGGATTCCATTTGTGCAAGATGTGGATATCCTTGAAGTGTTGGCTATTCGAGAGGGCTTGGCTGTGCGAGGGAGATGGGGCTCACAAAGCTGGAGGTTGAGTCAGACTCGGCTCGAGTGATTTCCCTGCTTCGTTCTGAGGTGAGAGACATCTCAAATTTGGGCGTTGTGGCGGAGGACATAAAGCAGATGGCGAGGACCTTGAGGGTATGTGTGTTCCGGTGGTGTAGCAGGTCAGCGAATCGACTGGCCCACGAAGTTGCGAGGACGGCTCTGGTGCAGCGGTGCGAAGGAATCTGGTCGGAGGATGTTCCAGCGGTGGTAGAAGAGGTGTATCGCTCTGAGGTTTTGGACAGTCCCTTCGGTGTGTCGGGGGGCTGTAGGCTTTAG

mRNA sequence

ATGCAAATTCCGAACAAAATCAAGATATTCTGCTGGAGAATGTATCATGACTATCTGCCTTCAGTGTCAAATTTGCGCAGAAGAGGGATGGATTTTCAGGAGGAATGTCCCAGATGTAAGGTTAAGGAGGAAACAACTTTCCATGCCATATGGGAATGTAAAGCAGTGAGGAAATGTTGGCAGAAATCGCCATTTTTTCCGAGACCAGGTCCTAATTCCATTCGTTGTGCTGCAGATCTATTGTGGTGGTGCTGGAGGAATATGCTAGGTGCCCAATTTGAGGAGTTTGTGGTGCTGTCTTGGTGGATTTGGAATAGAAGGAACAAGGAGTTTTTTGGAGGGAGCTTTAATTCGGAGATGGAGGATGGAGGGTGGGGTTGGGTTGTGGAGTACTTAGCCCATTTTCGGGCATTCCAGGGGAAAGGGGACATGAGAGGGGCGGGTATGAGGGTGGTTTCGGGTTGGAGCCCTCCGATTTTTCCTAATTATAAACTCAACACAGATGTTGCAGTTGATTCAGAGATGCAATTGAGTAGTATGAGAGCGGTGGTGCGAAATGAGAGGGGAGAAGTTATGCTTACCTTAATGAGGAGGATTCCATTTGTGCAAGATGTGGATATCCTTGAAGTGTTGGCTATTCGAGAGGGCTTGGCTGTGCGAGGGAGATGGGGCTCACAAAGCTGGAGGTCAGCGAATCGACTGGCCCACGAAGTTGCGAGGACGGCTCTGGTGCAGCGGTGCGAAGGAATCTGGTCGGAGGATGTTCCAGCGGTGGTAGAAGAGGTGTATCGCTCTGAGGTTTTGGACAGTCCCTTCGGTGTGTCGGGGGGCTGTAGGCTTTAG

Coding sequence (CDS)

ATGCAAATTCCGAACAAAATCAAGATATTCTGCTGGAGAATGTATCATGACTATCTGCCTTCAGTGTCAAATTTGCGCAGAAGAGGGATGGATTTTCAGGAGGAATGTCCCAGATGTAAGGTTAAGGAGGAAACAACTTTCCATGCCATATGGGAATGTAAAGCAGTGAGGAAATGTTGGCAGAAATCGCCATTTTTTCCGAGACCAGGTCCTAATTCCATTCGTTGTGCTGCAGATCTATTGTGGTGGTGCTGGAGGAATATGCTAGGTGCCCAATTTGAGGAGTTTGTGGTGCTGTCTTGGTGGATTTGGAATAGAAGGAACAAGGAGTTTTTTGGAGGGAGCTTTAATTCGGAGATGGAGGATGGAGGGTGGGGTTGGGTTGTGGAGTACTTAGCCCATTTTCGGGCATTCCAGGGGAAAGGGGACATGAGAGGGGCGGGTATGAGGGTGGTTTCGGGTTGGAGCCCTCCGATTTTTCCTAATTATAAACTCAACACAGATGTTGCAGTTGATTCAGAGATGCAATTGAGTAGTATGAGAGCGGTGGTGCGAAATGAGAGGGGAGAAGTTATGCTTACCTTAATGAGGAGGATTCCATTTGTGCAAGATGTGGATATCCTTGAAGTGTTGGCTATTCGAGAGGGCTTGGCTGTGCGAGGGAGATGGGGCTCACAAAGCTGGAGGTCAGCGAATCGACTGGCCCACGAAGTTGCGAGGACGGCTCTGGTGCAGCGGTGCGAAGGAATCTGGTCGGAGGATGTTCCAGCGGTGGTAGAAGAGGTGTATCGCTCTGAGGTTTTGGACAGTCCCTTCGGTGTGTCGGGGGGCTGTAGGCTTTAG

Protein sequence

MQIPNKIKIFCWRMYHDYLPSVSNLRRRGMDFQEECPRCKVKEETTFHAIWECKAVRKCWQKSPFFPRPGPNSIRCAADLLWWCWRNMLGAQFEEFVVLSWWIWNRRNKEFFGGSFNSEMEDGGWGWVVEYLAHFRAFQGKGDMRGAGMRVVSGWSPPIFPNYKLNTDVAVDSEMQLSSMRAVVRNERGEVMLTLMRRIPFVQDVDILEVLAIREGLAVRGRWGSQSWRSANRLAHEVARTALVQRCEGIWSEDVPAVVEEVYRSEVLDSPFGVSGGCRL
Homology
BLAST of Lag0041340.1 vs. NCBI nr
Match: XP_023915286.1 (uncharacterized protein LOC112026812 [Quercus suber])

HSP 1 Score: 132.1 bits (331), Expect = 7.4e-27
Identity = 85/222 (38.29%), Postives = 111/222 (50.00%), Query Frame = 0

Query: 1   MQIPNKIKIFCWRMYHDYLPSVSNLRRRGMDFQEECPRCKVKEETTFHAIWECKAVRKCW 60
           ++IPNKIK+F W+  H+ LP++  LR+R +   E CP CK+  +T  HA+WECKA +  W
Sbjct: 751 LRIPNKIKVFMWQACHNILPTLEKLRQRRIVENELCPICKLVPKTILHALWECKAAQDVW 810

Query: 61  QK-SPFFPRPGPNSIRCAADLLWWCWRNMLGAQFEEFVVLSWWIWNRRNKEFFGGSFNSE 120
              S    + G         L    W  M    FE F+VL W +W+RRN+  FGG     
Sbjct: 811 AGCSQRVLQKGLTVQSSMLQLTEDMWHKMPLDVFEFFLVLCWLLWHRRNRVVFGGLL--- 870

Query: 121 MEDGGW-GWVVEYLAHF---RAFQGKGDMRGAGMRVVSGWSPPIFPNYKLNTDVAVDSEM 180
            E G   G     LA F   R      +      R    W PP+   YKLN DVAV S++
Sbjct: 871 QEPGALIGRARCLLAEFVEARTHLAIPESLAHSQR----WQPPVGSRYKLNFDVAVFSDI 930

Query: 181 QLSSMRAVVRNERGEVMLTLMRRIPFVQDVDILEVLAIREGL 218
             S +  ++RN  G+VM  L  R P V D D  EVLA R GL
Sbjct: 931 SASGVGVIIRNGDGQVMAALSARGPAVTDGDEAEVLACRRGL 965

BLAST of Lag0041340.1 vs. NCBI nr
Match: XP_030941688.1 (uncharacterized protein LOC115966628 [Quercus lobata])

HSP 1 Score: 131.7 bits (330), Expect = 9.7e-27
Identity = 96/316 (30.38%), Postives = 135/316 (42.72%), Query Frame = 0

Query: 1    MQIPNKIKIFCWRMYHDYLPSVSNLRRRGMDFQEECPRCKVKEETTFHAIWECKAVRKCW 60
            +++PNKIK++ WR   D LP+ +NL RR +   E C  CK   ET  HA+WEC   +  W
Sbjct: 870  LKVPNKIKVYGWRACQDILPTRANLARRKILEDEHCEVCKTALETGIHALWECPVAQDVW 929

Query: 61   QKSPFFPRPGPNSIRCAADLLWWCWRNMLGAQFEEFVVLSWWIWNRRNKEFFGGSFNSEM 120
              S    +           L       +   +FE F+ LSW IWN+RN    GG    ++
Sbjct: 930  SGSLVRLQKCTQGYDDVLQLFGELLNRLSREEFELFLTLSWVIWNQRNAVIHGG----KI 989

Query: 121  EDGG--WGWVVEYLAHFRAFQGKGDMRGAGMRVVSGWSPPIFPNYKLNTDVAVDSEMQLS 180
            +D G        YL  +R  Q +  +  +  + V+ W PP    YKLN D A+ +E+  S
Sbjct: 990  KDPGQLCKRAEVYLLEYRQAQDQLSI-PSRQQSVTQWQPPPIDRYKLNFDAAIFTELGCS 1049

Query: 181  SMRAVVRNERGEVMLTLMRRIPFVQDVDILEVLAIREG-----------LAVRG------ 240
               A+VRNERGEVM  L  + P V + +  E LA R             L + G      
Sbjct: 1050 GFGAIVRNERGEVMAALSVKGPLVWNSEEAEALACRRAVEFAIHAGFAELMIEGDNVNVM 1109

Query: 241  ---------------------------RWGSQSW--RSANRLAHEVARTALVQRCEGIWS 269
                                       RW S S   R AN +AH +AR A     E IW 
Sbjct: 1110 KAVCSNSMDKSRLGHVFQDIQCLVHGLRWSSVSCVKRGANGVAHSLARFARYVSEETIWL 1169

BLAST of Lag0041340.1 vs. NCBI nr
Match: KAF4386304.1 (hypothetical protein G4B88_003521 [Cannabis sativa])

HSP 1 Score: 126.7 bits (317), Expect = 3.1e-25
Identity = 73/227 (32.16%), Postives = 112/227 (49.34%), Query Frame = 0

Query: 6   KIKIFCWRMYHDYLPSVSNLRRRGMDFQEECPRCKVKEETTFHAIWECKAVRKCWQKSPF 65
           K+KIF W++++ +LPS   L +RG+     C  CK ++E T HA+W C  V+  W+K  F
Sbjct: 121 KMKIFIWKVFNHWLPSKVELEKRGIALNTLCDWCKSQKEDTCHALWGCPKVQHIWEKMGF 180

Query: 66  FPRPGPNSIRCAADLLWWCWRNMLGAQFEEFVVLSWWIWNRRNKEFFGGSFNSEMEDGGW 125
           F    PN I   AD+LWW W      +F  FV  SW IW RRN   F    N    D  W
Sbjct: 181 FNLIQPN-INKPADVLWWLWDQFEKDKFLRFVGYSWLIWLRRNNFIFN---NKNPNDHIW 240

Query: 126 -GWVVEYLAHFRAFQGKGDMRGAGMRV--VSGWSPPIFPNYKLNTDVAVDSEMQLSSMRA 185
             W +E +       G    +   +++   + W  P    + +NTD A++S +    + A
Sbjct: 241 VEWAMETI---EQLLGSHQQKNTEVKIKPTATWIHPPAGFFSINTDAALNSGLLGCGLSA 300

Query: 186 VVRNERGEVMLTLMRRIPFVQDVDILEVLAIREGLAVRGRWGSQSWR 230
           ++RN  GE+++  +  +P    V + E  AIR G+ +  RW  +  R
Sbjct: 301 IIRNHTGELIVAEVVFLPGCLSVQLAETAAIRLGVKLALRWSIKKAR 340

BLAST of Lag0041340.1 vs. NCBI nr
Match: XP_030964861.1 (uncharacterized protein LOC115986145 [Quercus lobata])

HSP 1 Score: 125.9 bits (315), Expect = 5.3e-25
Identity = 75/219 (34.25%), Postives = 106/219 (48.40%), Query Frame = 0

Query: 1    MQIPNKIKIFCWRMYHDYLPSVSNLRRRGMDFQEECPRCKVKEETTFHAIWECKAVRKCW 60
            +++PNKIK+F WR  H+ LP+  NL RR +   + C  C    ET  HA+WEC   +  W
Sbjct: 865  LRVPNKIKVFGWRACHNILPTRDNLVRRKILEDDGCMLCSRMAETGVHALWECAVAKDVW 924

Query: 61   QKSPFFPRPGPNSIRCAADLLWWCWRNMLGAQFEEFVVLSWWIWNRRNKEFFGGSFNSEM 120
              +    +      +    L       +  A+FE F+V SW IWN+RN    GG    ++
Sbjct: 925  SSNMIRLQKCGQDQQDVLQLFQELMERLSTAKFEAFLVQSWLIWNQRNTVMHGG----KL 984

Query: 121  EDGGW--GWVVEYLAHFRAFQGKGDMRGAGMRVVSGWSPPIFPNYKLNTDVAVDSEMQLS 180
            +D  W      +YL  F   QG+  +          W PP  P YKLN D A+ S++  S
Sbjct: 985  KDPSWLNKRAKDYLEDFHQAQGQLQIPVTSSSGHDTWFPPPEPIYKLNFDAAIFSKLGCS 1044

Query: 181  SMRAVVRNERGEVMLTLMRRIPFVQDVDILEVLAIREGL 218
             + AV+RN   EVM  +  R P V D    E+LA R+ L
Sbjct: 1045 GVGAVIRNVHDEVMAAMSARGPPVIDNSEAEILACRKAL 1079

BLAST of Lag0041340.1 vs. NCBI nr
Match: XP_023908235.1 (uncharacterized protein LOC112019924 [Quercus suber])

HSP 1 Score: 124.8 bits (312), Expect = 1.2e-24
Identity = 79/227 (34.80%), Postives = 115/227 (50.66%), Query Frame = 0

Query: 1    MQIPNKIKIFCWRMYHDYLPSVSNLRRRGMDFQEECPRCKVKEETTFHAIWECKAVRKCW 60
            ++IPNKIK+F WR  HD LP+  NLR++ +   + CP C + +E+T HA+WEC   +  W
Sbjct: 1281 LRIPNKIKVFGWRACHDILPTRRNLRKKRILVDDLCPLCGLTQESTIHALWECTIAQDIW 1340

Query: 61   QKS-PFFPRPGPNSIRCAADLLWWCWRNMLGAQFEEFVVLSWWIWNRRNKEFFGGSFNSE 120
              S     + G   +   A LL +    +   + E F+V +W IWN+RN+  +GG     
Sbjct: 1341 HGSGRALQKCGTGQLDFVA-LLEYLLDRLNKTEVETFLVQAWLIWNQRNRVLYGGKL--- 1400

Query: 121  MEDG-----GWGWVVEYLAHFRAFQGKGDMRGAGMRVV----SGWSPPIFPNYKLNTDVA 180
            ME G       G + E+     + Q    M G   +V+    + W PP    YKLN D A
Sbjct: 1401 MEPGCLNRRAVGLIEEFQQSQASLQVDAQM-GVNRQVMQTDGTRWIPPPQAVYKLNYDAA 1460

Query: 181  VDSEMQLSSMRAVVRNERGEVMLTLMRRIPFVQDVDILEVLAIREGL 218
            V      S   AVVRN  G+VM  +  + P VQ  ++ E+LA R+ L
Sbjct: 1461 VFENSASSGFGAVVRNSTGDVMAAMTVKGPAVQGSEVAELLACRKAL 1502

BLAST of Lag0041340.1 vs. ExPASy TrEMBL
Match: A0A7J6GTN3 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_003521 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.5e-25
Identity = 73/227 (32.16%), Postives = 112/227 (49.34%), Query Frame = 0

Query: 6   KIKIFCWRMYHDYLPSVSNLRRRGMDFQEECPRCKVKEETTFHAIWECKAVRKCWQKSPF 65
           K+KIF W++++ +LPS   L +RG+     C  CK ++E T HA+W C  V+  W+K  F
Sbjct: 121 KMKIFIWKVFNHWLPSKVELEKRGIALNTLCDWCKSQKEDTCHALWGCPKVQHIWEKMGF 180

Query: 66  FPRPGPNSIRCAADLLWWCWRNMLGAQFEEFVVLSWWIWNRRNKEFFGGSFNSEMEDGGW 125
           F    PN I   AD+LWW W      +F  FV  SW IW RRN   F    N    D  W
Sbjct: 181 FNLIQPN-INKPADVLWWLWDQFEKDKFLRFVGYSWLIWLRRNNFIFN---NKNPNDHIW 240

Query: 126 -GWVVEYLAHFRAFQGKGDMRGAGMRV--VSGWSPPIFPNYKLNTDVAVDSEMQLSSMRA 185
             W +E +       G    +   +++   + W  P    + +NTD A++S +    + A
Sbjct: 241 VEWAMETI---EQLLGSHQQKNTEVKIKPTATWIHPPAGFFSINTDAALNSGLLGCGLSA 300

Query: 186 VVRNERGEVMLTLMRRIPFVQDVDILEVLAIREGLAVRGRWGSQSWR 230
           ++RN  GE+++  +  +P    V + E  AIR G+ +  RW  +  R
Sbjct: 301 IIRNHTGELIVAEVVFLPGCLSVQLAETAAIRLGVKLALRWSIKKAR 340

BLAST of Lag0041340.1 vs. ExPASy TrEMBL
Match: A0A7J6FF66 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_022923 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.5e-25
Identity = 82/280 (29.29%), Postives = 128/280 (45.71%), Query Frame = 0

Query: 3   IPNKIKIFCWRMYHDYLPSVSNLRRRGMDFQEECPRCKVKEETTFHAIWECKAVRKCWQK 62
           +  K+KIF WR++H++LP  + L +RGM     C  CK   E   HA+W C  +   W+ 
Sbjct: 119 LTRKMKIFIWRVFHNWLPVKTELIKRGMSMNITCNWCKSHVEDVCHALWNCPKLHNVWKH 178

Query: 63  SPFFPRPGPNSIRCAADLLWWCWRNMLGAQFEEFVVLSWWIWNRRNKEFFGGSFNSEMED 122
             F     P+S+R A D L      +   +F  F+ ++W IW RRNK  F    N ++ED
Sbjct: 179 FGFI-HQFPSSLRHAPDFLMVMKGKLSKEEFIFFIGITWLIWFRRNKCIFQ---NKDIED 238

Query: 123 GGW-GWVVEYLAHFRAFQGKGDMRGAGMRVVSGWSPPIFPNYKLNTDVAVDSEMQLSSMR 182
             W  W +E L    AF  K   +      VS WSPP   ++ +NTD ++        + 
Sbjct: 239 SIWIPWAMEMLELHLAFAHKDSHQKPSKDKVS-WSPPPLGSFMINTDASLIDGQPGCGLG 298

Query: 183 AVVRNERGEVMLTLMRRIPFVQDVDILEVLAIREGLAVRGRWGSQS------WRSANRLA 242
            ++R+  G ++ T    IP    V + E LAIR  L +      Q+       +S N +A
Sbjct: 299 VIIRDHLGALVTTATDYIPGCLSVLVAETLAIRLALKLAATRSMQNIFIASDSQSCNNVA 358

Query: 243 HEVARTALVQRCEGIWSEDVPAVVEEVYRSEVLDSPFGVS 276
           H +A  + +     +W+  +P       ++   D P G S
Sbjct: 359 HCLANWSRLVHVSDVWTSFLPDCAAASLKA---DLPLGTS 390

BLAST of Lag0041340.1 vs. ExPASy TrEMBL
Match: A0A2N9G0G1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24139 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 9.8e-25
Identity = 71/221 (32.13%), Postives = 107/221 (48.42%), Query Frame = 0

Query: 1    MQIPNKIKIFCWRMYHDYLPSVSNLRRRGMDFQEECPRCKVKEETTFHAIWECKAVRKCW 60
            +QIP+KI+ F WR  H  LP+ SNL  R +     C  C  + E+T HA+W+CK++   W
Sbjct: 1241 VQIPSKIRHFLWRACHSSLPTRSNLHHRHVLDDPRCNSCTDQIESTIHALWQCKSIVPLW 1300

Query: 61   QKSPFFPRPGPNSIRCAADLLWWCWRNMLGAQFEEFVVLSWWIWNRRNKEFF--GGSFNS 120
               P+  +    S     DL++ C   +   + + F V+ W IW RRN+         N+
Sbjct: 1301 HSIPWGQKLSKTSYTDCIDLIYQCTLTLSTNELQLFAVICWSIWYRRNRLRLQQPADTNT 1360

Query: 121  EMEDGGWGWVVEYLAHFRAFQGKGDMRG--AGMRVVSGWSPPIFPNYKLNTDVAVDSEMQ 180
            ++         E L  F A Q +G  R        V  W PP    +K+N D AV S+  
Sbjct: 1361 QLVRR----ARETLLEFHAAQDRGKQRSMQPNSTTVIKWKPPEVSRFKVNYDGAVFSDRN 1420

Query: 181  LSSMRAVVRNERGEVMLTLMRRIPFVQDVDILEVLAIREGL 218
             + +  ++RN RGEVM  L +RIP+   V+ +E  A R  +
Sbjct: 1421 EAGIGVIIRNHRGEVMGALSQRIPYPHSVEAVEASAARSAI 1457

BLAST of Lag0041340.1 vs. ExPASy TrEMBL
Match: A0A2N9EYC3 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7737 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.2e-24
Identity = 70/221 (31.67%), Postives = 107/221 (48.42%), Query Frame = 0

Query: 1    MQIPNKIKIFCWRMYHDYLPSVSNLRRRGMDFQEECPRCKVKEETTFHAIWECKAVRKCW 60
            +QIP+K + F WR  H  LP+ SNL  R +     C  C  + E+T HA+W+CK++   W
Sbjct: 1314 LQIPSKTRHFLWRACHSSLPTRSNLHHRHILDDPRCSSCTDQIESTIHALWQCKSIVPLW 1373

Query: 61   QKSPFFPRPGPNSIRCAADLLWWCWRNMLGAQFEEFVVLSWWIWNRRNKEFF--GGSFNS 120
               P+  +    S     DL++ C   +   +F+ F V+ W IW RRN+         N+
Sbjct: 1374 HSIPWGQKLSKTSYTDCIDLIYQCTLTLSTNEFQLFAVICWSIWYRRNRLRLQQPADTNT 1433

Query: 121  EMEDGGWGWVVEYLAHFRAFQGKGDMRG--AGMRVVSGWSPPIFPNYKLNTDVAVDSEMQ 180
            ++         E L  F   Q +G  R   +    V  W PP    YK+N D AV ++  
Sbjct: 1434 QLIRR----ARETLLEFHEAQDRGKQRSLQSNSTTVIKWKPPEDRRYKVNYDGAVFNDRN 1493

Query: 181  LSSMRAVVRNERGEVMLTLMRRIPFVQDVDILEVLAIREGL 218
             + +  ++RN RGEVM  L +RIP+   V+ +E  A R  +
Sbjct: 1494 EAGIGVIIRNHRGEVMGALSQRIPYPHSVEAVEASAARSAI 1530

BLAST of Lag0041340.1 vs. ExPASy TrEMBL
Match: A0A6J1DAR4 (uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018954 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-23
Identity = 86/301 (28.57%), Postives = 124/301 (41.20%), Query Frame = 0

Query: 1    MQIPNKIKIFCWRMYHDYLPSVSNLRRRGMDFQEECPRCKVKEETTFHAIWECKAVRKCW 60
            M IPNKIK+F WR+  D LP+  NL +RG++    C  C    E + H  W CK     W
Sbjct: 842  MHIPNKIKVFLWRLCLDRLPTGCNLSKRGVEITNCCYFCGRNGEDSIHLFWICKFAEALW 901

Query: 61   QKSPFFPRPGPNSIRCAADLLWWCWRNMLGAQFEEFVVLSWWIWNRRNKEFFGGSFNSEM 120
              S  F +  P  I      L     ++  A FEE  V+ W +WN+RN   F  S  +  
Sbjct: 902  INSK-FGKLSPFLI------LRESHESLSKADFEELCVVIWGLWNQRNARAFNDSTKTVF 961

Query: 121  EDGG--WGWVVEYLAHFRAFQGKGDMRGAGMRVVSGWSPPIFPNYKLNTDVAVDSEMQLS 180
            + G     W  +Y   FR  +               W PP    YK+NTD +  +  Q +
Sbjct: 962  KIGMELVEWANKYAMEFREAKSNPITGRVTNTAEILWQPPDEGIYKINTDASFLASDQHA 1021

Query: 181  SMRAVVRNERGEVMLTLMRRIPFVQDVDILEVLAIREGLAVRGRWG-------------- 240
             +  ++ N+RG+VM    + +  +Q VD+ E +A  EGL +    G              
Sbjct: 1022 GLGIIIHNDRGQVMAAATKYLENIQSVDMAEAIAAVEGLQLASEIGMHPALEDLSETGEI 1081

Query: 241  ----SQSW------------RSANRLAHEVARTALVQRCEGIWSEDVPAVVEEVYRSEVL 270
                   W            R  N+ AH +AR AL+     IW ED P  ++     E L
Sbjct: 1082 VLKAKNFWTQSLHASFNFVKREGNKAAHMLARRALLLHEFSIWMEDWPLELKSCLEMECL 1135

BLAST of Lag0041340.1 vs. TAIR 10
Match: AT2G02650.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 47.4 bits (111), Expect = 2.2e-05
Identity = 20/63 (31.75%), Postives = 32/63 (50.79%), Query Frame = 0

Query: 1   MQIPNKIKIFCWRMYHDYLPSVSNLRRRGMDFQEECPRCKVKEETTFHAIWECKAVRKCW 60
           + +  KIK F WR     L + + LR R +D    C RC ++EET  H ++ C   +  W
Sbjct: 40  LHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQSVW 99

Query: 61  QKS 64
           + +
Sbjct: 100 RSA 102

BLAST of Lag0041340.1 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 2.9e-05
Identity = 21/63 (33.33%), Postives = 29/63 (46.03%), Query Frame = 0

Query: 1   MQIPNKIKIFCWRMYHDYLPSVSNLRRRGMDFQEECPRCKVKEETTFHAIWECKAVRKCW 60
           + I  K+K F WR     L +   L  RGM     CPRC  + E+  HA++ C      W
Sbjct: 165 LPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAW 224

Query: 61  QKS 64
           + S
Sbjct: 225 RLS 227

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023915286.17.4e-2738.29uncharacterized protein LOC112026812 [Quercus suber][more]
XP_030941688.19.7e-2730.38uncharacterized protein LOC115966628 [Quercus lobata][more]
KAF4386304.13.1e-2532.16hypothetical protein G4B88_003521 [Cannabis sativa][more]
XP_030964861.15.3e-2534.25uncharacterized protein LOC115986145 [Quercus lobata][more]
XP_023908235.11.2e-2434.80uncharacterized protein LOC112019924 [Quercus suber][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A7J6GTN31.5e-2532.16Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_003521 PE=4 SV=1[more]
A0A7J6FF667.5e-2529.29Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_022923 PE=4 SV=1[more]
A0A2N9G0G19.8e-2532.13Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24139 PE=4 SV=1[more]
A0A2N9EYC32.2e-2431.67Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A6J1DAR41.1e-2328.57uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
Match NameE-valueIdentityDescription
AT2G02650.12.2e-0531.75Ribonuclease H-like superfamily protein [more]
AT3G09510.12.9e-0533.33Ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 2..60
e-value: 1.5E-13
score: 51.3
NoneNo IPR availablePANTHERPTHR46736FAMILY NOT NAMEDcoord: 1..215
NoneNo IPR availablePANTHERPTHR46736:SF6SUBFAMILY NOT NAMEDcoord: 1..215

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0041340Lag0041340gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0041340.1.exon2Lag0041340.1.exon2exon
Lag0041340.1.exon1Lag0041340.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0041340.1cds.Lag0041340.1_2CDS
cds.Lag0041340.1cds.Lag0041340.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0041340.1Lag0041340.1-proteinpolypeptide