Lag0041309.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0041309.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr13: 15406279 .. 15409273 (-)
Sequence length	1338
RNA-Seq Expression	Lag0041309.1
Synteny	Lag0041309.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAGATAAAAGAAATTGGGAATACGGAAAGGCGCAGGAGCCAACGACTTTTAGGATCTTCTAGTAAGAAACCGAATCAAAAGGCAAATGAAATGGAAGTACTGACAATTGATTCAGAGGTATATATTAAATATATTGGGTTATTATTTAAATCATAAATATACTATATACTTCTCATATCTTTGTATACTATGTACTACTTCTTAGGACGAAAGCTCGGATGCTAGTGTTGAGTATCCAATGAAACTTTCATTGGATACACAACCTGTAAGACAAATGTTCGAACGTATTATAGGAAATGTGGGGCGAATGTTTAATGCAATGAAGCCCGAAAAAAGTAAAGATGATGGTGAGGAGGCAACTGTTGAAGATAAGGTACATCATCGTTAAAATTTGACTTCACGAATACATAAATAAAGATGTCGTTTGATAGCCTAATTTGATATTTATTTTTGTATTTAAAGCATGACACGCCTATTGAGGAAGATAATATCACGAGCACACAAGTTGTGTTGTATTCAAATACACGAGAGGTATTGTAGCAAAATATTTTATTCTATATGCAGTATATATTGGAATAATGACAACAAAAAATAATTTTATGTTTTTTTTACAAAGGAGGAATCTGTTGCATCAGAAAGAGTTATTGAAGATGTTGTAGGACGAGGCCAATGTGATACAAATGTAATTAAAGAACCTGAAGTTATTGGAGAAAAAGAAGATGAAGGGTCAGATGAGAAAGATGTCTTCGAGATTAGACAGCAGGATCAAGAAAAAGAAGAACAAAAAGAGGAAACTGATGAGGTATATTAGATAAATACACCGTATGTGACTATCTTTCTTAAAATCATTTAATTCTTCTAACAAACATGGACATAATTTTCAGGAAGATGATTTGACATTGAGTGTGAGATTGCAAATAATTAATAAAAAACGGAAGAATTTGGAAACGATAGAGATGGTAAGTATTACAAACTTTGTATTAATTTAATATATATGAGTGTTTAATGGTTGCACTATTATATTGGTAGGAAACACCCAATAACAAGAGACCAAAAAAAACGAAACATGATTTGTCAGCTGAGGAATCTACAAAAAAGGTAATACGTTATTTCTATCTCTATTATGTTTATATACATTTACATGTAATTTAAACAATATTGTTCTTTTCAGATAACACGACAACAACGTTGTCCAAAGCAAGATTCTAAATCTAAATCTAAGGAATCTTTAAGGGTCAAGGCCAATTCAAGCAAGGTTATAAAGAACGACAAGAAGGTAATATTAAATAATAATAAAAAAATGATTATTGAATATATATGTTTGATAATATTTGAATGTTAACAATTAATAGGTGACAAAAAGAATGCGGGTAACAAAAAATCTTCTATCAAGAAGAAAGCAACAAAAGCTTCAAGGTTTGGAAGAGGATCTGTCATTGGGCAGGACCGAACTGAAAAATACCAGGTATATGTCTATTATACTATGAATATTTATGAAGTATATTGTGTAACATGAAATTAGCATGGATTATGAAATGTATCTAAATAATTTTTCAGGATGCCCCCTTCTTCTTCCAAGAGAAAAATGGTCTTCTGTCCAAAAGCTTAACATTTATGGAAGTTTAGATGTCCTTACTAAAATTAAACAAAACCTTAAGAAGAGACATCTTAAGCGATTTAGGAATAGCTGCGTAGGAAAGTTTTTAGACCTTAATATCAATAGATTTCAGAGTCAATTCCTTTACCATCTGATTAGAAGGCAATGCAGCCCAACCAAAGGAGATGAGTTGTGGTTCAATTTTGAAGGAATAGTTGTCAACTTTGGAATAAAGACTTTGAAATTATAACTGGGCTAAATTGTGGAGAATTGCCAAAAGTAGTTGTTGCTAAATTATCTGGGAGATTTGTAAACAAGTACTTTGGAAATGATCGACCAATTCGTAGGTCCGATGTTCATAAACTTTTCATTGAGGGATGGGGTGTGAAAAAGAAAGACATGGTCAAGCTTGCCAAATTGTACTTTCTATTCAATTTTTTGATTGGAAAACAAAAAAGTACCAGGATAGAACTTGAACATTTGATGCTAGTGGATGACGAGATCTAGTTTGAAAACTATCCTGGGGTCGTTTGGCATATGAAGCAACAATAAAGTCAACTAAACATGCAATTGTCAACCCAGAAGCATCGCTCATTGTGTGGGCATATGAGTGTATTCCTCTAATATCCAACCCCAATAATTCATACGCAAGAAAAATAGATTCACGGTTGCCAAAGATGAAAAATTGGGCCATCGACATACAACCAGAGTGGAGGATTTGGCATTGAAGGTGTTTGAACATGAAGAGGTAAACAATGTAATTTTTTTAGAATTTTGTAAACTCTAAATTTCATCCACATCGAATAAACACACTGTATTTATTTTGTGTGCATGTAGTTTACATTTTTTCCACTCACCGAGGAGCATATTAGTGACAATTTTCTTGGGAAGCAACAAGCTACCATTCAAGATTCAGTTGTATATGGAGAACCATCAAAAAGTAAAAGTTTGAATCAAGAATTGGAGGACAAAATGTTGATGGTTACTAATACAATCCTTTCTCGTTTTACTTATTTTGAAGATTTAATAGAGAAGAATTTTAAGGTCTTAGAGGCTAAGATTGACTGCGTCTACTGCGAACTCAAACTCATGAAGGAAAAGGGTAAGAGACCAAAAAATGCAAAAAAAATTGATGAGGGAGATGAAAACGATGGTCAAGATGGGAATGACGACAATACAGATGGACGAGATGGGGATACTGGAGTAGATATGAATAATGAAAATGAAGATGGTGCAGAGGGCAATCGTAGAGATGATCATGGTGCTGAAGGAGATGAACATGGTGCAAGAGGAGAAAATGATAAAAGCGGCTCAAATGAACAAAATGTCATGGGTGCAAATTTAGAAGACCTTTCGATTAACACAGATGTTGAAAGAAGTAGAAAAGATTGA

mRNA sequence

ATGGTGAAGATAAAAGAAATTGGGAATACGGAAAGGCGCAGGAGCCAACGACTTTTAGGATCTTCTAGTAAGAAACCGAATCAAAAGGCAAATGAAATGGAAGTACTGACAATTGATTCAGAGGACGAAAGCTCGGATGCTAGTGTTGAGTATCCAATGAAACTTTCATTGGATACACAACCTGTAAGACAAATGTTCGAACGTATTATAGGAAATGTGGGGCGAATGTTTAATGCAATGAAGCCCGAAAAAAGTAAAGATGATGGTGAGGAGGCAACTGTTGAAGATAAGGAGGAATCTGTTGCATCAGAAAGAGTTATTGAAGATGTTGTAGGACGAGGCCAATGTGATACAAATGTAATTAAAGAACCTGAAGTTATTGGAGAAAAAGAAGATGAAGGGTCAGATGAGAAAGATGTCTTCGAGATTAGACAGCAGGATCAAGAAAAAGAAGAACAAAAAGAGGAAACTGATGAGATAACACGACAACAACGTTGTCCAAAGCAAGATTCTAAATCTAAATCTAAGGAATCTTTAAGGGTCAAGGCCAATTCAAGCAAGGTTATAAAGAACGACAAGAAGGTGACAAAAAGAATGCGGGTAACAAAAAATCTTCTATCAAGAAGAAAGCAACAAAAGCTTCAAGGTTTGGAAGAGGATCTGTCATTGGGCAGGACCGAACTGAAAAATACCAGATTCACGGTTGCCAAAGATGAAAAATTGGGCCATCGACATACAACCAGAGTGGAGGATTTGGCATTGAAGGTGTTTGAACATGAAGAGTTTACATTTTTTCCACTCACCGAGGAGCATATTAGTGACAATTTTCTTGGGAAGCAACAAGCTACCATTCAAGATTCAGTTGTATATGGAGAACCATCAAAAAGTAAAAGTTTGAATCAAGAATTGGAGGACAAAATGTTGATGGTTACTAATACAATCCTTTCTCGTTTTACTTATTTTGAAGATTTAATAGAGAAGAATTTTAAGGTCTTAGAGGCTAAGATTGACTGCGTCTACTGCGAACTCAAACTCATGAAGGAAAAGGGTAAGAGACCAAAAAATGCAAAAAAAATTGATGAGGGAGATGAAAACGATGGTCAAGATGGGAATGACGACAATACAGATGGACGAGATGGGGATACTGGAGTAGATATGAATAATGAAAATGAAGATGGTGCAGAGGGCAATCGTAGAGATGATCATGGTGCTGAAGGAGATGAACATGGTGCAAGAGGAGAAAATGATAAAAGCGGCTCAAATGAACAAAATGTCATGGGTGCAAATTTAGAAGACCTTTCGATTAACACAGATGTTGAAAGAAGTAGAAAAGATTGA

Coding sequence (CDS)

ATGGTGAAGATAAAAGAAATTGGGAATACGGAAAGGCGCAGGAGCCAACGACTTTTAGGATCTTCTAGTAAGAAACCGAATCAAAAGGCAAATGAAATGGAAGTACTGACAATTGATTCAGAGGACGAAAGCTCGGATGCTAGTGTTGAGTATCCAATGAAACTTTCATTGGATACACAACCTGTAAGACAAATGTTCGAACGTATTATAGGAAATGTGGGGCGAATGTTTAATGCAATGAAGCCCGAAAAAAGTAAAGATGATGGTGAGGAGGCAACTGTTGAAGATAAGGAGGAATCTGTTGCATCAGAAAGAGTTATTGAAGATGTTGTAGGACGAGGCCAATGTGATACAAATGTAATTAAAGAACCTGAAGTTATTGGAGAAAAAGAAGATGAAGGGTCAGATGAGAAAGATGTCTTCGAGATTAGACAGCAGGATCAAGAAAAAGAAGAACAAAAAGAGGAAACTGATGAGATAACACGACAACAACGTTGTCCAAAGCAAGATTCTAAATCTAAATCTAAGGAATCTTTAAGGGTCAAGGCCAATTCAAGCAAGGTTATAAAGAACGACAAGAAGGTGACAAAAAGAATGCGGGTAACAAAAAATCTTCTATCAAGAAGAAAGCAACAAAAGCTTCAAGGTTTGGAAGAGGATCTGTCATTGGGCAGGACCGAACTGAAAAATACCAGATTCACGGTTGCCAAAGATGAAAAATTGGGCCATCGACATACAACCAGAGTGGAGGATTTGGCATTGAAGGTGTTTGAACATGAAGAGTTTACATTTTTTCCACTCACCGAGGAGCATATTAGTGACAATTTTCTTGGGAAGCAACAAGCTACCATTCAAGATTCAGTTGTATATGGAGAACCATCAAAAAGTAAAAGTTTGAATCAAGAATTGGAGGACAAAATGTTGATGGTTACTAATACAATCCTTTCTCGTTTTACTTATTTTGAAGATTTAATAGAGAAGAATTTTAAGGTCTTAGAGGCTAAGATTGACTGCGTCTACTGCGAACTCAAACTCATGAAGGAAAAGGGTAAGAGACCAAAAAATGCAAAAAAAATTGATGAGGGAGATGAAAACGATGGTCAAGATGGGAATGACGACAATACAGATGGACGAGATGGGGATACTGGAGTAGATATGAATAATGAAAATGAAGATGGTGCAGAGGGCAATCGTAGAGATGATCATGGTGCTGAAGGAGATGAACATGGTGCAAGAGGAGAAAATGATAAAAGCGGCTCAAATGAACAAAATGTCATGGGTGCAAATTTAGAAGACCTTTCGATTAACACAGATGTTGAAAGAAGTAGAAAAGATTGA

Protein sequence

MVKIKEIGNTERRRSQRLLGSSSKKPNQKANEMEVLTIDSEDESSDASVEYPMKLSLDTQPVRQMFERIIGNVGRMFNAMKPEKSKDDGEEATVEDKEESVASERVIEDVVGRGQCDTNVIKEPEVIGEKEDEGSDEKDVFEIRQQDQEKEEQKEETDEITRQQRCPKQDSKSKSKESLRVKANSSKVIKNDKKVTKRMRVTKNLLSRRKQQKLQGLEEDLSLGRTELKNTRFTVAKDEKLGHRHTTRVEDLALKVFEHEEFTFFPLTEEHISDNFLGKQQATIQDSVVYGEPSKSKSLNQELEDKMLMVTNTILSRFTYFEDLIEKNFKVLEAKIDCVYCELKLMKEKGKRPKNAKKIDEGDENDGQDGNDDNTDGRDGDTGVDMNNENEDGAEGNRRDDHGAEGDEHGARGENDKSGSNEQNVMGANLEDLSINTDVERSRKD

Homology

The following BLAST results are available for this feature:

BLAST of Lag0041309.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0041309.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0041309.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0041309.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 143..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 371..416
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..187
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..187
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 351..445
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 417..431

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0041309	Lag0041309	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0041309.1.exon7	Lag0041309.1.exon7	exon
Lag0041309.1.exon6	Lag0041309.1.exon6	exon
Lag0041309.1.exon5	Lag0041309.1.exon5	exon
Lag0041309.1.exon4	Lag0041309.1.exon4	exon
Lag0041309.1.exon3	Lag0041309.1.exon3	exon
Lag0041309.1.exon2	Lag0041309.1.exon2	exon
Lag0041309.1.exon1	Lag0041309.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0041309.1	cds.Lag0041309.1_7	CDS
cds.Lag0041309.1	cds.Lag0041309.1_6	CDS
cds.Lag0041309.1	cds.Lag0041309.1_5	CDS
cds.Lag0041309.1	cds.Lag0041309.1_4	CDS
cds.Lag0041309.1	cds.Lag0041309.1_3	CDS
cds.Lag0041309.1	cds.Lag0041309.1_2	CDS
cds.Lag0041309.1	cds.Lag0041309.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0041309.1	Lag0041309.1-protein	polypeptide