Lag0039818.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039818.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribosome biogenesis protein BOP1 homolog
Location	chr13: 191258 .. 191770 (-)
Sequence length	231
RNA-Seq Expression	Lag0039818.1
Synteny	Lag0039818.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGAAGAAGATCGGCCAAAGTTTATTCCTAGAAGGTGATAAAGCTTTATATATAGCCAATTGTTAATAGTATTGTTCCTTGTATACTCATCATATAACCATCTTTTTTTGTTGTGCATCCATTGATTTATATTATATTTGTTCTGGACAGGTTTACATCCATGAGAAGTGTACCTGCTTACTACGATGCTCTTAAGGATTCATTTGAACGTTGCTTGGATCTGTACTTGTGTGCTCGTGTTCAGAGAAAACGTGTAAGCAAAACAAGATCGAGAAGATTTGCTATTTTCTTTTAAAAAAATTGAACCCTATTGGTTCCTGGGTCTTACACCAGATTGGGCTCTTTTGATGTTATTCTACTACTTAATAACTATACAAATACGTTGATAATTTTTTTTCCCCATAACTTTCATGTTTCAGATTAATATTGATTCTGAATCTTTGAAGCCTAAGCTGCCAAGCCGGAATGATCTCAAACCTTTTCCTACTACACGCTATCTTGAATATTGA

mRNA sequence

ATGTATGAAGAAGATCGGCCAAAGTTTATTCCTAGAAGGTTTACATCCATGAGAAGTGTACCTGCTTACTACGATGCTCTTAAGGATTCATTTGAACGTTGCTTGGATCTGTACTTGTGTGCTCGTGTTCAGAGAAAACGTATTAATATTGATTCTGAATCTTTGAAGCCTAAGCTGCCAAGCCGGAATGATCTCAAACCTTTTCCTACTACACGCTATCTTGAATATTGA

Coding sequence (CDS)

ATGTATGAAGAAGATCGGCCAAAGTTTATTCCTAGAAGGTTTACATCCATGAGAAGTGTACCTGCTTACTACGATGCTCTTAAGGATTCATTTGAACGTTGCTTGGATCTGTACTTGTGTGCTCGTGTTCAGAGAAAACGTATTAATATTGATTCTGAATCTTTGAAGCCTAAGCTGCCAAGCCGGAATGATCTCAAACCTTTTCCTACTACACGCTATCTTGAATATTGA

Protein sequence

MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY

Homology

[Close]

BLAST of Lag0039818.1 vs. NCBI nr
Match: XP_022149038.1 (ribosome biogenesis protein BOP1 homolog [Momordica charantia])

HSP 1 Score: 140.6 bits (353), Expect = 5.7e-30
Identity = 66/76 (86.84%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1   MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLP 60
           MYEEDRPKFIPRRFTSMRSVPAY +ALKD+FERCLDLYLC RV++KRINID ESLKPKLP
Sbjct: 309 MYEEDRPKFIPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRKKRINIDPESLKPKLP 368

Query: 61  SRNDLKPFPTTRYLEY 77
           SR DLKP+PTT YLEY
Sbjct: 369 SRKDLKPYPTTCYLEY 384

[Close]

BLAST of Lag0039818.1 vs. NCBI nr
Match: XP_038889809.1 (ribosome biogenesis protein BOP1 homolog isoform X2 [Benincasa hispida])

HSP 1 Score: 139.4 bits (350), Expect = 1.3e-29
Identity = 65/76 (85.53%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1   MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLP 60
           MYEEDRPKFIPRRFTSMRSVPAY +ALKD+FERCLDLYLC RV++KRINID ESLKPKLP
Sbjct: 312 MYEEDRPKFIPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRKKRINIDPESLKPKLP 371

Query: 61  SRNDLKPFPTTRYLEY 77
           +R DLKP+PTT YLEY
Sbjct: 372 NRKDLKPYPTTCYLEY 387

[Close]

BLAST of Lag0039818.1 vs. NCBI nr
Match: XP_038889804.1 (ribosome biogenesis protein BOP1 homolog isoform X1 [Benincasa hispida] >XP_038889805.1 ribosome biogenesis protein BOP1 homolog isoform X1 [Benincasa hispida] >XP_038889806.1 ribosome biogenesis protein BOP1 homolog isoform X1 [Benincasa hispida] >XP_038889807.1 ribosome biogenesis protein BOP1 homolog isoform X1 [Benincasa hispida] >XP_038889808.1 ribosome biogenesis protein BOP1 homolog isoform X1 [Benincasa hispida] >XP_038889810.1 ribosome biogenesis protein BOP1 homolog isoform X1 [Benincasa hispida] >XP_038889811.1 ribosome biogenesis protein BOP1 homolog isoform X1 [Benincasa hispida] >XP_038889812.1 ribosome biogenesis protein BOP1 homolog isoform X1 [Benincasa hispida] >XP_038889813.1 ribosome biogenesis protein BOP1 homolog isoform X1 [Benincasa hispida])

HSP 1 Score: 139.4 bits (350), Expect = 1.3e-29
Identity = 65/76 (85.53%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1   MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLP 60
           MYEEDRPKFIPRRFTSMRSVPAY +ALKD+FERCLDLYLC RV++KRINID ESLKPKLP
Sbjct: 313 MYEEDRPKFIPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRKKRINIDPESLKPKLP 372

Query: 61  SRNDLKPFPTTRYLEY 77
           +R DLKP+PTT YLEY
Sbjct: 373 NRKDLKPYPTTCYLEY 388

[Close]

BLAST of Lag0039818.1 vs. NCBI nr
Match: XP_011656053.1 (ribosome biogenesis protein BOP1 homolog [Cucumis sativus] >XP_031741954.1 ribosome biogenesis protein BOP1 homolog [Cucumis sativus] >KAE8648978.1 hypothetical protein Csa_008235 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 2.8e-29
Identity = 64/76 (84.21%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1   MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLP 60
           MYEEDRPKFIPRRFTSMRSVPAY +ALKD+FERCLDLYLC RV++KRINID ESLKPKLP
Sbjct: 312 MYEEDRPKFIPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRKKRINIDPESLKPKLP 371

Query: 61  SRNDLKPFPTTRYLEY 77
           +R DL+P+PTT YLEY
Sbjct: 372 NRKDLRPYPTTCYLEY 387

[Close]

BLAST of Lag0039818.1 vs. NCBI nr
Match: KAF3452624.1 (hypothetical protein FNV43_RR03057 [Rhamnella rubrinervis])

HSP 1 Score: 137.1 bits (344), Expect = 6.3e-29
Identity = 63/76 (82.89%), Postives = 70/76 (92.11%), Query Frame = 0


Query: 1   MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLP 60
           MYEEDRPKFIPRR+TSMR++PAY +A+KDSFERCLDLYLC RV++KRINID ESLKPKLP
Sbjct: 326 MYEEDRPKFIPRRYTSMRNIPAYENAVKDSFERCLDLYLCPRVRKKRINIDPESLKPKLP 385

Query: 61  SRNDLKPFPTTRYLEY 77
           SR DLKPFP T YLEY
Sbjct: 386 SRKDLKPFPITCYLEY 401

[Close]

BLAST of Lag0039818.1 vs. ExPASy Swiss-Prot
Match: F4IH25 (Ribosome biogenesis protein BOP1 homolog OS=Arabidopsis thaliana OX=3702 GN=BOP1 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 7.7e-30
Identity = 59/76 (77.63%), Postives = 69/76 (90.79%), Query Frame = 0


Query: 1   MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLP 60
           M+EEDRPKFIP RFTS+RS+PAY +ALK+SFERCLDLYLC RV++KRINID ESLKPKLP
Sbjct: 344 MFEEDRPKFIPTRFTSLRSIPAYENALKESFERCLDLYLCPRVRKKRINIDPESLKPKLP 403

Query: 61  SRNDLKPFPTTRYLEY 77
           SR DL+P+P + YLEY
Sbjct: 404 SRKDLRPYPNSCYLEY 419

[Close]

BLAST of Lag0039818.1 vs. ExPASy Swiss-Prot
Match: Q0D6V7 (Ribosome biogenesis protein BOP1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=BOP1 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.6e-27
Identity = 54/76 (71.05%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 1   MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLP 60
           MYEEDRPKFIPR+F  +RSVPAY  AL++ F+RCLDLYLC R ++KRINID ESLKPKLP
Sbjct: 266 MYEEDRPKFIPRKFDCLRSVPAYEKALREGFDRCLDLYLCPRTRKKRINIDPESLKPKLP 325

Query: 61  SRNDLKPFPTTRYLEY 77
           S+ DL+P+P T YLE+
Sbjct: 326 SKKDLRPYPRTCYLEF 341

[Close]

BLAST of Lag0039818.1 vs. ExPASy Swiss-Prot
Match: A8ID74 (Ribosome biogenesis protein BOP1 homolog OS=Chlamydomonas reinhardtii OX=3055 GN=CHLREDRAFT_111274 PE=3 SV=2)

HSP 1 Score: 97.8 bits (242), Expect = 5.5e-20
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = 0


Query: 4   EDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDS-ESLKPKLPSR 63
           EDRPK +P+ FTS+R+VPAY D +K+ FERCLDLYLC RV+RKR++I S E L P+LP  
Sbjct: 387 EDRPKALPQAFTSLRAVPAYTDFIKERFERCLDLYLCPRVRRKRLDIKSPEQLVPQLPKP 446

Query: 64  NDLKPFPTTRYLEY 77
            DL+PFPTT  L Y
Sbjct: 447 RDLQPFPTTLALAY 460

[Close]

BLAST of Lag0039818.1 vs. ExPASy Swiss-Prot
Match: Q0CCP0 (Ribosome biogenesis protein erb1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=erb1 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 5.7e-17
Identity = 40/69 (57.97%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 3   EEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSR 62
           E+   +F+P  F S+R VP Y + +K+ FERCLDLYL  RV+R ++NID ESL PKLPS 
Sbjct: 347 EDREQEFLPNDFGSLRKVPGYENFVKEKFERCLDLYLAPRVRRSKLNIDPESLLPKLPSP 406

Query: 63  NDLKPFPTT 72
            +LKPFPTT
Sbjct: 407 EELKPFPTT 415

[Close]

BLAST of Lag0039818.1 vs. ExPASy Swiss-Prot
Match: B3MHX6 (Ribosome biogenesis protein BOP1 homolog OS=Drosophila ananassae OX=7217 GN=GF11675 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 7.5e-17
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 9   FIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPF 68
           F+P++FTS+R+VPAY   L++ F RCLDLYLC R +R ++NID+E L PKLPS  DL+PF
Sbjct: 385 FMPQKFTSLRAVPAYSRYLRERFLRCLDLYLCPRAKRVKLNIDAEYLIPKLPSPRDLQPF 444

Query: 69  PTTRYLEY 77
           PT   L Y
Sbjct: 445 PTIESLVY 452

The following BLAST results are available for this feature:

BLAST of Lag0039818.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149038.1	5.7e-30	86.84	ribosome biogenesis protein BOP1 homolog [Momordica charantia]	[more]
XP_038889809.1	1.3e-29	85.53	ribosome biogenesis protein BOP1 homolog isoform X2 [Benincasa hispida]	[more]
XP_038889804.1	1.3e-29	85.53	ribosome biogenesis protein BOP1 homolog isoform X1 [Benincasa hispida] >XP_0388...	[more]
XP_011656053.1	2.8e-29	84.21	ribosome biogenesis protein BOP1 homolog [Cucumis sativus] >XP_031741954.1 ribos...	[more]
KAF3452624.1	6.3e-29	82.89	hypothetical protein FNV43_RR03057 [Rhamnella rubrinervis]	[more]

BLAST of Lag0039818.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IH25	7.7e-30	77.63	Ribosome biogenesis protein BOP1 homolog OS=Arabidopsis thaliana OX=3702 GN=BOP1...	[more]
Q0D6V7	3.6e-27	71.05	Ribosome biogenesis protein BOP1 homolog OS=Oryza sativa subsp. japonica OX=3994...	[more]
A8ID74	5.5e-20	63.51	Ribosome biogenesis protein BOP1 homolog OS=Chlamydomonas reinhardtii OX=3055 GN...	[more]
Q0CCP0	5.7e-17	57.97	Ribosome biogenesis protein erb1 OS=Aspergillus terreus (strain NIH 2624 / FGSC ...	[more]
B3MHX6	7.5e-17	58.82	Ribosome biogenesis protein BOP1 homolog OS=Drosophila ananassae OX=7217 GN=GF11...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012953	BOP1, N-terminal domain	PFAM	PF08145	BOP1NT	coord: 3..69 e-value: 3.7E-27 score: 95.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..76
IPR028598	WD repeat BOP1/Erb1	PANTHER	PTHR17605	RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEIN	coord: 1..76

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0039818	Lag0039818	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0039818.1.exon3	Lag0039818.1.exon3	exon
Lag0039818.1.exon2	Lag0039818.1.exon2	exon
Lag0039818.1.exon1	Lag0039818.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0039818.1	cds.Lag0039818.1_3	CDS
cds.Lag0039818.1	cds.Lag0039818.1_2	CDS
cds.Lag0039818.1	cds.Lag0039818.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0039818.1	Lag0039818.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006364	rRNA processing
biological_process	GO:0007276	gamete generation
biological_process	GO:0000466	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0051302	regulation of cell division
cellular_component	GO:0005654	nucleoplasm
cellular_component	GO:0070545	PeBoW complex
cellular_component	GO:0030687	preribosome, large subunit precursor
molecular_function	GO:0043021	ribonucleoprotein complex binding