Lag0039781.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0039781.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr2: 49750675 .. 49751214 (-)
Sequence length540
RNA-Seq ExpressionLag0039781.1
SyntenyLag0039781.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCAAGCAAAGAGGAAGATATTATCCTAAAAATTTTTGAAGATTTAAAAGTTACAGCGGAGGAAAGGGCTAACACCTATCAATTGCCAGAAGAGGATCTGGAGAAATCAAAGCAAAGGCTGACTAATGCTCTTCTATGCAAGATGTTTACAAAAAAGAAAATTCCCCCGGAGATGTTTATATCAAAAATGCCAAAGATATGGAACCAGGAGCAGACCATTATTGGAAAAATGGGTTTTAATCTATTTCTATGCAAGTTCAAGAATGCGCATATCAAAAGATGGGTAAAAGAAGCGGGTCCATGGTTTTTTGATAAAGCTCTAATTCTGATGAAGGAGCCAAGTGTAGACATAAGCGGCGACGAAATGGAGTTCGAGTATGTGTCATTTTGGATTCATTTTCATAAGCTTCCATATGCCTATTTTTCTAGGAAATCAGCCACGACTATTGGCAGCCTTCTCGGTTTAGTGGAACAAGTGGATCTTAACGAGGAAGAGGATCAAATGTGGGGATTTTCTTTAAGAATTAAAGTGTAG

mRNA sequence

ATGGCGGCAAGCAAAGAGGAAGATATTATCCTAAAAATTTTTGAAGATTTAAAAGTTACAGCGGAGGAAAGGGCTAACACCTATCAATTGCCAGAAGAGGATCTGGAGAAATCAAAGCAAAGGCTGACTAATGCTCTTCTATGCAAGATGTTTACAAAAAAGAAAATTCCCCCGGAGATGTTTATATCAAAAATGCCAAAGATATGGAACCAGGAGCAGACCATTATTGGAAAAATGGGTTTTAATCTATTTCTATGCAAGTTCAAGAATGCGCATATCAAAAGATGGGTAAAAGAAGCGGGTCCATGGTTTTTTGATAAAGCTCTAATTCTGATGAAGGAGCCAAGTGTAGACATAAGCGGCGACGAAATGGAGTTCGAGTATGTGTCATTTTGGATTCATTTTCATAAGCTTCCATATGCCTATTTTTCTAGGAAATCAGCCACGACTATTGGCAGCCTTCTCGGTTTAGTGGAACAAGTGGATCTTAACGAGGAAGAGGATCAAATGTGGGGATTTTCTTTAAGAATTAAAGTGTAG

Coding sequence (CDS)

ATGGCGGCAAGCAAAGAGGAAGATATTATCCTAAAAATTTTTGAAGATTTAAAAGTTACAGCGGAGGAAAGGGCTAACACCTATCAATTGCCAGAAGAGGATCTGGAGAAATCAAAGCAAAGGCTGACTAATGCTCTTCTATGCAAGATGTTTACAAAAAAGAAAATTCCCCCGGAGATGTTTATATCAAAAATGCCAAAGATATGGAACCAGGAGCAGACCATTATTGGAAAAATGGGTTTTAATCTATTTCTATGCAAGTTCAAGAATGCGCATATCAAAAGATGGGTAAAAGAAGCGGGTCCATGGTTTTTTGATAAAGCTCTAATTCTGATGAAGGAGCCAAGTGTAGACATAAGCGGCGACGAAATGGAGTTCGAGTATGTGTCATTTTGGATTCATTTTCATAAGCTTCCATATGCCTATTTTTCTAGGAAATCAGCCACGACTATTGGCAGCCTTCTCGGTTTAGTGGAACAAGTGGATCTTAACGAGGAAGAGGATCAAATGTGGGGATTTTCTTTAAGAATTAAAGTGTAG

Protein sequence

MAASKEEDIILKIFEDLKVTAEERANTYQLPEEDLEKSKQRLTNALLCKMFTKKKIPPEMFISKMPKIWNQEQTIIGKMGFNLFLCKFKNAHIKRWVKEAGPWFFDKALILMKEPSVDISGDEMEFEYVSFWIHFHKLPYAYFSRKSATTIGSLLGLVEQVDLNEEEDQMWGFSLRIKV
Homology
BLAST of Lag0039781.1 vs. NCBI nr
Match: XP_042952204.1 (uncharacterized protein LOC122289286 [Carya illinoinensis])

HSP 1 Score: 102.1 bits (253), Expect = 5.3e-18
Identity = 59/173 (34.10%), Postives = 95/173 (54.91%), Query Frame = 0

Query: 8   DIILKIFEDLKVTAEERANTYQLPEEDLEKSKQRLTNALLCKMFTKKKIPPEMFISKMPK 67
           D +  I+  LK+T EE+     LPEE ++  K R ++ +       + +  E F S M K
Sbjct: 3   DELASIWSSLKLTEEEQQELV-LPEETIQSIKIRGSHCIFALNLNGRSVNREAFKSTMAK 62

Query: 68  IWNQEQTIIGK-MGFNLFLCKFKNAHIKRWVKEAGPWFFDKALILMKEPSVDISGDEMEF 127
           +WN E  I  K +GFN FL +F+    KR V +  PW FD+ LI MK+   D++ +E+ F
Sbjct: 63  VWNLEGWITFKEIGFNKFLIEFQLLSDKRKVLQGRPWSFDRHLICMKDFKDDLAPNEISF 122

Query: 128 EYVSFWIHFHKLPYAYFSRKSATTIGSLLGLVEQVDLNEEEDQMWGFSLRIKV 180
           +   FW+  H +P+A  + +    +GS++G V  V+  +++   WG  LRI+V
Sbjct: 123 KTEPFWVQLHNVPFAVMNVEQGVKLGSVIGKVHTVE-TDDQGCGWGRHLRIRV 173

BLAST of Lag0039781.1 vs. NCBI nr
Match: XP_042958101.1 (uncharacterized protein LOC122293641 [Carya illinoinensis])

HSP 1 Score: 99.0 bits (245), Expect = 4.4e-17
Identity = 58/173 (33.53%), Postives = 95/173 (54.91%), Query Frame = 0

Query: 8   DIILKIFEDLKVTAEERANTYQLPEEDLEKSKQRLTNALLCKMFTKKKIPPEMFISKMPK 67
           D +  I+  LK+T EE+     LPEE ++  K R ++ +       + +  E F S M K
Sbjct: 3   DELALIWSSLKLTEEEQQELV-LPEEIIQSIKLRRSHCIFALNLNDRSVNREAFKSTMAK 62

Query: 68  IWNQEQTIIGK-MGFNLFLCKFKNAHIKRWVKEAGPWFFDKALILMKEPSVDISGDEMEF 127
           +WN E  I  K +GFN FL +++    KR V +  PW FD  LI MK+   D++ +E+ F
Sbjct: 63  VWNLEGWITFKEIGFNKFLIEYQLLSDKRKVLQGRPWSFDWHLICMKDFEGDLAQNEIIF 122

Query: 128 EYVSFWIHFHKLPYAYFSRKSATTIGSLLGLVEQVDLNEEEDQMWGFSLRIKV 180
           +   FW+  H +P+A  + +    +GS++G V +V+  +++   WG  LRI+V
Sbjct: 123 KTEPFWVQLHNVPFAVMNAEQGEKLGSVIGKVHKVE-TDDQGCGWGRHLRIRV 173

BLAST of Lag0039781.1 vs. NCBI nr
Match: XP_042939400.1 (uncharacterized protein LOC122274425 [Carya illinoinensis])

HSP 1 Score: 99.0 bits (245), Expect = 4.4e-17
Identity = 57/173 (32.95%), Postives = 93/173 (53.76%), Query Frame = 0

Query: 8   DIILKIFEDLKVTAEERANTYQLPEEDLEKSKQRLTNALLCKMFTKKKIPPEMFISKMPK 67
           D +  I+  LK+T EE+     LPEE  +  K R ++ +       + +  E F S M K
Sbjct: 3   DELASIWSSLKLTEEEQQELV-LPEETFQSIKTRGSHCIFAFHLYDRSVNREAFKSTMAK 62

Query: 68  IWNQEQTIIGK-MGFNLFLCKFKNAHIKRWVKEAGPWFFDKALILMKEPSVDISGDEMEF 127
           +WN E  I  K +GFN FL +F+    KR V +  PW FD+ LI +K+   D++ +++ F
Sbjct: 63  VWNLEGWITFKEIGFNKFLIEFQLLSDKRKVLQGRPWSFDRHLICLKDFEDDLAPNDISF 122

Query: 128 EYVSFWIHFHKLPYAYFSRKSATTIGSLLGLVEQVDLNEEEDQMWGFSLRIKV 180
               FW+  H +P+A  + +    +GS++G V  V+  +++   WG  LRI+V
Sbjct: 123 RTEPFWVQLHNVPFAAMNAEQGVILGSVIGKVHTVE-TDDQGCGWGRHLRIRV 173

BLAST of Lag0039781.1 vs. NCBI nr
Match: XP_042942919.1 (uncharacterized protein LOC122277105 [Carya illinoinensis])

HSP 1 Score: 99.0 bits (245), Expect = 4.4e-17
Identity = 55/173 (31.79%), Postives = 93/173 (53.76%), Query Frame = 0

Query: 8   DIILKIFEDLKVTAEERANTYQLPEEDLEKSKQRLTNALLCKMFTKKKIPPEMFISKMPK 67
           D +  I+  LK+T EE+     LPEE  +  K + ++ +       + +  E F S M K
Sbjct: 3   DELASIWSSLKLTEEEQQELV-LPEETFQSIKTKSSHCIFAYHLYDRSVNREAFKSTMAK 62

Query: 68  IWNQEQTIIGK-MGFNLFLCKFKNAHIKRWVKEAGPWFFDKALILMKEPSVDISGDEMEF 127
           +WN E  I  K +GFN FL +F+    KR V +  PW FD+ LI +K+   D++ +++ F
Sbjct: 63  VWNLEGWITFKEIGFNKFLIEFQLLSDKRKVLQGRPWSFDRHLICLKDFEDDLAPNDIRF 122

Query: 128 EYVSFWIHFHKLPYAYFSRKSATTIGSLLGLVEQVDLNEEEDQMWGFSLRIKV 180
               FW+  H +P+A  + +    +GS++G V  V+  +++   WG  LR++V
Sbjct: 123 RTEPFWVQLHNVPFAVMNAEQGVILGSVIGKVHTVE-TDDQGCGWGRHLRVRV 173

BLAST of Lag0039781.1 vs. NCBI nr
Match: XP_042980043.1 (uncharacterized protein LOC122310226 [Carya illinoinensis])

HSP 1 Score: 98.6 bits (244), Expect = 5.8e-17
Identity = 57/173 (32.95%), Postives = 93/173 (53.76%), Query Frame = 0

Query: 8   DIILKIFEDLKVTAEERANTYQLPEEDLEKSKQRLTNALLCKMFTKKKIPPEMFISKMPK 67
           D +  I+  LK+T EE+     LPEE  +  K R ++ +       + +  E F S M K
Sbjct: 3   DELASIWSSLKLTEEEQQELV-LPEETFQSIKTRGSHCIFAFHLYDRSVNREAFKSTMAK 62

Query: 68  IWNQEQTIIGK-MGFNLFLCKFKNAHIKRWVKEAGPWFFDKALILMKEPSVDISGDEMEF 127
           +WN E  I  K +GFN FL +F+    KR V +  PW FD+ LI +K+   D++ +++ F
Sbjct: 63  VWNLEGWITFKEIGFNKFLIEFQLLSDKRKVLQGRPWSFDRHLICLKDFEDDLAPNDITF 122

Query: 128 EYVSFWIHFHKLPYAYFSRKSATTIGSLLGLVEQVDLNEEEDQMWGFSLRIKV 180
               FW+  H +P+A  + +    +GS++G V  V+  +++   WG  LRI+V
Sbjct: 123 RTEPFWVQLHNVPFAAMNAEQGVILGSVIGKVHTVE-TDDQGCGWGRHLRIRV 173

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_042952204.15.3e-1834.10uncharacterized protein LOC122289286 [Carya illinoinensis][more]
XP_042958101.14.4e-1733.53uncharacterized protein LOC122293641 [Carya illinoinensis][more]
XP_042939400.14.4e-1732.95uncharacterized protein LOC122274425 [Carya illinoinensis][more]
XP_042942919.14.4e-1731.79uncharacterized protein LOC122277105 [Carya illinoinensis][more]
XP_042980043.15.8e-1732.95uncharacterized protein LOC122310226 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 35..179
e-value: 5.9E-23
score: 81.0

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0039781Lag0039781gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0039781.1.exon1Lag0039781.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0039781.1cds.Lag0039781.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0039781.1Lag0039781.1-proteinpolypeptide