Lag0039313.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0039313.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGag protease polyprotein
Locationchr2: 41126250 .. 41126574 (-)
Sequence length225
RNA-Seq ExpressionLag0039313.1
SyntenyLag0039313.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCAGTATGACGAAGATCTCCCTGATGAGCAAGATCTTGCGCCGCCTGTACCTCCAGCACCGGCGCAGACTGTCACTTTGACTTTTGAGGCTCTTCAGGTCGCTTATGAATAATGTCGTTACCAACCAGGCTCCCCAAGCGAACCAAAATGAGAATCAGGATCAAGTTGGCTCAATTGTGGGAGCTCGGTGTCTTAAGGATTTTAAGAAGTATGACCCACCGACGTTTTGCGGAAAGGCTGTGGATCCTACGGAGGCCGAAGCTTGGGCTGCCACAATTGAAAATTTTTTTCGCTATATGGGATGTCCTGAGGCTCAATAG

mRNA sequence

ATGGATCAGTATGACGAAGATCTCCCTGATGAGCAAGATCTTGCGCCGCCTGTACCTCCAGCACCGGCGCAGACTGTCACTTTGACTTTTGAGGCTCTTCAGGATTTTAAGAAGTATGACCCACCGACGTTTTGCGGAAAGGCTGTGGATCCTACGGAGGCCGAAGCTTGGGCTGCCACAATTGAAAATTTTTTTCGCTATATGGGATGTCCTGAGGCTCAATAG

Coding sequence (CDS)

ATGGATCAGTATGACGAAGATCTCCCTGATGAGCAAGATCTTGCGCCGCCTGTACCTCCAGCACCGGCGCAGACTGTCACTTTGACTTTTGAGGCTCTTCAGGATTTTAAGAAGTATGACCCACCGACGTTTTGCGGAAAGGCTGTGGATCCTACGGAGGCCGAAGCTTGGGCTGCCACAATTGAAAATTTTTTTCGCTATATGGGATGTCCTGAGGCTCAATAG

Protein sequence

MDQYDEDLPDEQDLAPPVPPAPAQTVTLTFEALQDFKKYDPPTFCGKAVDPTEAEAWAATIENFFRYMGCPEAQ
Homology
[Close]
BLAST of Lag0039313.1 vs. NCBI nr
Match: XP_022928602.1 (uncharacterized protein LOC111435460 [Cucurbita moschata])

HSP 1 Score: 64.3 bits (155), Expect = 5.0e-07
Identity = 25/50 (50.00%), Postives = 34/50 (68.00%), Query Frame = 0 

Query: 25  TVTLTFEALQDFKKYDPPTFCGKAVDPTEAEAWAATIENFFRYMGCPEAQ 75
           ++T  F+ L+DF+KYDPP F GK +DP   E+W  +IE  F +M CPE Q
Sbjct: 79  SMTREFKYLRDFRKYDPPVFEGKTIDPVLVESWVESIETIFEHMNCPEDQ 128

[Close]
BLAST of Lag0039313.1 vs. NCBI nr
Match: TYJ97124.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 5.0e-07
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 0 

Query: 11 EQDLAPPVP-PAPA------QTVT--LTFEA--LQDFKKYDPPTFCGKAVDPTEAEAWAA 70
          +Q  APP P PAPA      Q V+  L+ EA  L+DF+KY+P TF G   +PTEA+ W +
Sbjct: 7  QQQPAPPAPAPAPALVPVVPQVVSDQLSAEAKHLRDFRKYNPTTFDGSLENPTEAQLWLS 66

Query: 71 TIENFFRYMGCPEAQ 75
          ++E  FRYM CPE Q
Sbjct: 67 SLETIFRYMKCPEDQ 81

[Close]
BLAST of Lag0039313.1 vs. NCBI nr
Match: KAA0053259.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 6.6e-07
Identity = 33/68 (48.53%), Postives = 40/68 (58.82%), Query Frame = 0 

Query: 17  PVPPAPAQTVT--------LTFEA--LQDFKKYDPPTFCGKAVDPTEAEAWAATIENFFR 75
           PVPPAP   +         L+ EA  L+DFKKY+P TF G   DPT A+ W + +E  FR
Sbjct: 76  PVPPAPGPALVVPQVVPDQLSAEAKHLRDFKKYNPTTFDGSLEDPTNAQMWLSFLETIFR 135

[Close]
BLAST of Lag0039313.1 vs. NCBI nr
Match: XP_022967882.1 (uncharacterized protein LOC111467258 isoform X1 [Cucurbita maxima])

HSP 1 Score: 63.5 bits (153), Expect = 8.6e-07
Identity = 25/50 (50.00%), Postives = 34/50 (68.00%), Query Frame = 0 

Query: 25  TVTLTFEALQDFKKYDPPTFCGKAVDPTEAEAWAATIENFFRYMGCPEAQ 75
           ++T  F+ L+DF+KYDPP F GK +DP   E+W  +IE  F +M CPE Q
Sbjct: 102 SMTREFKYLRDFRKYDPPVFEGKTIDPVLVESWVESIETIFEHMKCPEDQ 151

[Close]
BLAST of Lag0039313.1 vs. NCBI nr
Match: XP_022967883.1 (uncharacterized protein LOC111467258 isoform X2 [Cucurbita maxima])

HSP 1 Score: 63.5 bits (153), Expect = 8.6e-07
Identity = 25/50 (50.00%), Postives = 34/50 (68.00%), Query Frame = 0 

Query: 25  TVTLTFEALQDFKKYDPPTFCGKAVDPTEAEAWAATIENFFRYMGCPEAQ 75
           ++T  F+ L+DF+KYDPP F GK +DP   E+W  +IE  F +M CPE Q
Sbjct: 79  SMTREFKYLRDFRKYDPPVFEGKTIDPVLVESWVESIETIFEHMKCPEDQ 128

The following BLAST results are available for this feature:
BLAST of Lag0039313.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022928602.15.0e-0750.00uncharacterized protein LOC111435460 [Cucurbita moschata][more]
TYJ97124.15.0e-0749.33gag protease polyprotein [Cucumis melo var. makuwa][more]
KAA0053259.16.6e-0748.53pol protein [Cucumis melo var. makuwa][more]
XP_022967882.18.6e-0750.00uncharacterized protein LOC111467258 isoform X1 [Cucurbita maxima][more]
XP_022967883.18.6e-0750.00uncharacterized protein LOC111467258 isoform X2 [Cucurbita maxima][more]
BLAST of Lag0039313.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0039313Lag0039313gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0039313.1.exon2Lag0039313.1.exon2exon
Lag0039313.1.exon1Lag0039313.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0039313.1cds.Lag0039313.1_2CDS
cds.Lag0039313.1cds.Lag0039313.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0039313.1Lag0039313.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
molecular_function GO:0016787 hydrolase activity