Lag0037893.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0037893.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionHistidine-rich glycoprotein-like isoform X2
Locationchr2: 10280396 .. 10280725 (+)
Sequence length330
RNA-Seq ExpressionLag0037893.1
SyntenyLag0037893.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTCAAAAGCAGCAACAACAACAACACCAAGAATAATGCTTTTGATCATCGCCGCGATGGTCGCTGCGAGCATCGCCCTGCTTCCGATGGCAACGGAAGCGCACGTTATTCCGACCGTCGGTCCGGTCGCTGATTGCATCAAGGGCTGCACAGGGTCATTGACAAGTTTAACGCCTGGTTATTGCCTGAGTATATGTCAAGCTGAGTTCGTTGTACCAAGAGTACATCCTCATCCTCATCCTAACCCTCACCCTCATCCTCATCCTCATCCTCATCCCGAAGCTCAGGCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTGA

mRNA sequence

ATGAATTCAAAAGCAGCAACAACAACAACACCAAGAATAATGCTTTTGATCATCGCCGCGATGGTCGCTGCGAGCATCGCCCTGCTTCCGATGGCAACGGAAGCGCACGTTATTCCGACCGTCGGTCCGGTCGCTGATTGCATCAAGGGCTGCACAGGGTCATTGACAAGTTTAACGCCTGGTTATTGCCTGAGTATATGTCAAGCTGAGTTCGTTGTACCAAGAGTACATCCTCATCCTCATCCTAACCCTCACCCTCATCCTCATCCTCATCCTCATCCCGAAGCTCAGGCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTGA

Coding sequence (CDS)

ATGAATTCAAAAGCAGCAACAACAACAACACCAAGAATAATGCTTTTGATCATCGCCGCGATGGTCGCTGCGAGCATCGCCCTGCTTCCGATGGCAACGGAAGCGCACGTTATTCCGACCGTCGGTCCGGTCGCTGATTGCATCAAGGGCTGCACAGGGTCATTGACAAGTTTAACGCCTGGTTATTGCCTGAGTATATGTCAAGCTGAGTTCGTTGTACCAAGAGTACATCCTCATCCTCATCCTAACCCTCACCCTCATCCTCATCCTCATCCTCATCCCGAAGCTCAGGCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTGA

Protein sequence

MNSKAATTTTPRIMLLIIAAMVAASIALLPMATEAHVIPTVGPVADCIKGCTGSLTSLTPGYCLSICQAEFVVPRVHPHPHPNPHPHPHPHPHPEAQAGSGSGSGSGSG
Homology
BLAST of Lag0037893.1 vs. NCBI nr
Match: KAG6607883.1 (hypothetical protein SDJN03_01225, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-10
Identity = 49/93 (52.69%), Postives = 57/93 (61.29%), Query Frame = 0

Query: 1  MNSKAATTTTPRIMLLIIAAMVAASIALLPMATEAHVIPTVGPVADCIKGCTGSLTSLTP 60
          MNSK  +T     ML+IIAA+ A +I LLPM  EAH IPTVG +  CIK C  SL SL P
Sbjct: 1  MNSKTTST-----MLIIIAAIAAVTIVLLPMPAEAH-IPTVGVIPKCIKSCLSSLQSLGP 60

Query: 61 GYCLSICQAEFVVPRVHPHPHPNPHPHPHPHPH 94
           YC  +C+AEF  PR H H H + H H    PH
Sbjct: 61 SYCSDLCKAEFPPPR-HQHQHQHRHRHRRSQPH 86

BLAST of Lag0037893.1 vs. NCBI nr
Match: KAG6591952.1 (hypothetical protein SDJN03_14298, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024824.1 hypothetical protein SDJN02_13643, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-09
Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 0

Query: 6  ATTTTPRIMLLIIAAMVAASI-ALLPMATEAHVIPTVGPVADCIKGCTGSLTSLTPGYCL 65
          +T +TPR +L+++  MVA  I  LLPMA EA  +P  G V+ CI+GCT SL  LT GYCL
Sbjct: 3  STKSTPRRVLIVVTMMVALIIVGLLPMAAEA-TVPAGGAVSQCIQGCTKSLAGLTSGYCL 62

Query: 66 SICQAEFVVPRVHPHPHPNPHPHPH 90
          ++C AEF     HPH H + H H H
Sbjct: 63 TLCSAEFHPLSAHPHHHEHDHSHAH 86

BLAST of Lag0037893.1 vs. NCBI nr
Match: KAA0064320.1 (histidine-rich glycoprotein-like isoform X2 [Cucumis melo var. makuwa] >TYK20266.1 histidine-rich glycoprotein-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 3.1e-05
Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 0

Query: 17 IIAAMVAASIALLPMATEAHVIPTVGPVADCIKGCTGSLTSLTPGYCLSICQAEFVVPRV 76
          +I A ++  I  LPM  EA  IP VGP+A CI+GCT SL++LTPGYC++IC AE+     
Sbjct: 1  MIVATLSIVIVSLPMGAEA--IPLVGPIAQCIQGCTRSLSTLTPGYCMNICGAEY----- 60

Query: 77 HPHPHPNPHPHPHPHPHPEAQ 98
            HP  NP    H   H + +
Sbjct: 61 --HPLTNPIQDTHQKHHVQVE 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6607883.11.9e-1052.69hypothetical protein SDJN03_01225, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6591952.11.6e-0950.59hypothetical protein SDJN03_14298, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0064320.13.1e-0545.68histidine-rich glycoprotein-like isoform X2 [Cucumis melo var. makuwa] >TYK20266... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..109

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0037893Lag0037893gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0037893.1.exon1Lag0037893.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0037893.1cds.Lag0037893.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0037893.1Lag0037893.1-proteinpolypeptide