Lag0037666.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037666.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr2: 8131129 .. 8134314 (+)
Sequence length	477
RNA-Seq Expression	Lag0037666.1
Synteny	Lag0037666.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAGGTATCCCGTGCATCACAGGAAGATGATATATACAGAAAACGGAACGTACTTTCTGCCACGTGGCAAGTTATGATTGGGTCATATTTCCGTATCGGGTACGACGACACGTGGACCGAGTTGTCCGAATCGGGTCGGGTATTTTGATTGGCTGATGACGTGGCGAGTATATCGAGTGGCGGGATATACTCTGTCAAAAGAATTGGTGGGCGCGTGGGTGCGTGGTGACAGGGAAGTCTTGTGTGTCCGTGAGCTGCATTTGGTTTCAGCGAGCTTTTATCCTAAACTATATTTTACTATTATTATTCTAAAAAAAAAACTATATTTTACTATTATTTTTTTTTTGAAACATTTACTATTATTATTCTTAAAATAAAAAATATATTTTACTATTATTATTCTAAAAAAAAAGAAACTATATTTTACTATTATTATTCTAAAAGAAAAAAAAAAAAGGAAAAATACACTTTTAGTCCTGAGGTTTGGGTTAAGTGACAGTTTGGTCCCTGAGTTTTCAAACTCAACAAAAATACCCCTGAGTTTTGAGATAAGAAGCATTTTGGTCCCTGCCGTCCAATTTTCCGTTAAATGCTAACAGATTGCTGACGTGGCCAAATTTTTTTTAATTTTAAAATAAAAATAAAGAAAAAACAATAAAAAATAATAAAAATATTATTATTTAAATGATTTTTAAAACTTTAACTCTCCACCCACTTCTTCATCTTCTTCCCTCAACCCCTCCACCTTCTTCTTCACATCTCCGCCGCCGGCGTCGGCGGCCGGCCACCGCTCGCCGCCACCGGCCGGCGGCCGGTCGCCGACGACTGTAATTTTTTTTTCTTTTCTTCTCCTTACTTCCTCTCTTTTACCCCAACCCATTTTTCTTCTTTTCTTAAAAAAAAAAAATCAAGAGGGAGGTCCCTCCTCCCTCCCCGTCCAGATCTGGGAGCGGTGGCGGCGAGCGGTGGCCGGCCGCTGGCGCCGGCGCCGGAGATGTGAAGAAGAAGGTGGAGGGGTTGAGGGAAGAAGATGAAGAAGTGGGTGGAGAGTTAAGTTTTAAAAATCATTTAAATAATAATATTTTTATTATTTTTTATTGTTTTTTCTTTATTTTTATTTTAAAATTAAAAAAATTAATTTTTAATTAAAAAAATTTGGCCACCTCAGCAATCTGTTAGCCTTTAACGGAAAATTGGACGGCAGGGACCAAAATGCTCCTTATCTCAAAACTCAGGGGTATTTTTGTTGAGTTTGAAAATTCAGGGATCAAACTGTCACTTAACCCAAACCTCAGGGACTAAAAGTGTATTTTTCCCAAGAAAAAACTATATTTTACTATTATTGGACGTTACTGCTGTTAATATTCCAAATCTAAAAGTAATTCAGTTTTTTTTTTTCTTTTTCTTTCTTTAGTACAAAAAGTAATTCAGTCTTTATTATTATTATTTTTTGTAAATTTTAATCAAACATAAGAGGGAGAGAATTTGAACTCCAAGTTTTTGATACAGAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTGTTGCAAATGAAAAGAAATAGAACTTTTTTTTTGAGAATATGAAAAGAAATAGAACTTAAAATGCAACTAACAAAAGAGTTTGGTCATCTCGGTCTTAAAGAAACATCCGGTTTGAACACCATCTCTATCATTGCAAACAGCTAGAGCCGCCCATTCCAAAACCTCCTCAAGCCAGACGCCATCTCTTCAATTGCTTCGAGCGAATGTTGCTAACACATTGACCGCTTAATTCGTTGACCTAGAGGTAAATAGAAGCCCTTTCAATTCCAGAGAATATTTCAGTTAAAACAAAGATTTGTCCCATTTTGTTCTCTAAATTTTGTTTTATTTGAACTCGTGAACATACAAAATGTGAATTTTCTTGACTAAATTTTTAGATTTGACTTATTAATTTTTGTCCATGTATTTTTTAAATAGCTATTTTAATTCTTGAACTTACAAAAAAAAAAAATAATTTATTTTTATTTTTCTTTGATAAATTGGTAGTATAACTCCAAGTATCTATAATACTGAACTTAATGTGATTTTCTATTTGATCCACATATGTTAAAAATAAATGTTATGTTAAATGATGTTGGATGGAGAAATAATATAGACAAGGATCCAACAAGTACTTTATGAAAGTTCATGGATCAAGGTATGTTAAATAGTGATTTTAGCAAAATGATTTATTTAGGAGTGATTTCTTACAATTGATTTTCGTATATTTATTTTAAGGGAAAAATAATGTTTGGTTCTACACTTTTAAAGGTGATTTTTGAATTTTGCTATAAAAAAAAAGTGATTTTTGAATAATTTGGACATATGTTTAGAAGTGATTTTAGAATAAGTGGTTTAATCCTAAATGATTTACTTATAATTATTTTTGTAAAAGTATGTTTATTGTAAATACTTTTACTAATCACTTTTCATAGTTCAGGAATCTATGGATTACAACTTGAAAAAAATTTATAACCAAACTTCTAATTTAACCAATAATTTTAAAAAATAGTTATTAAATTCTTTAATTTTAATTATTTATTTTTAGATTGGAAGTAGTTAAGATTATTTAGTGTATAAAATAATATTTAAAAATGTCATAAAAAAATTTATTTTAATTTTATATAATGAATTAATTTATAAATAAACCACAACAATTGTATAAATCTCAACTATATCTACCTATCAGCGACATCACATTCTCAGATTGTACATGTCATTATTATTATTATCTTTTTTTCTGATAAAAACATAGCTTCATTTATTATTTCAAAAGGGGATTTGGTAGTTCGTGATTCCAGCGGTTCTTTGATTTGTGTGGGCCTGCAGACAACAAAAGGGGATTGGTTGATCAGTGTTTTAGAAGCAAAGGCTATGTGAGAAGGACTCAAATCGTTAATCGAGCTGGCCGGTGACGCTCAGGAAATTGAAATTGAATCGGATGCCCTTGATCTCATCCGATGCTTGAGCAATCCAGATGATAATTTGACAAAGATCAAGAGTTTAGTAGAAGCCATTAAAGCTTTGGCTCCCAAACTAGGAGTGCTCTCTTTTCAGCACTGTCATAGATCTCAGAACGCAAAGGAGCTTTTAGTTTTTGTGATTCTGTCTTTTTTGTTGAGGAACTAG

mRNA sequence

ATGGTGGAGGTATCCCGTGCATCACAGGAAGATGATATATACAGAAAACGGAACGTACTTTCTGCCACGTGGCAAGTTATGATTGGGTCATATTTCCGTATCGGGTACGACGACACGTGGACCGAGTTGTCCGAATCGGGTCGGAGGGAGGTCCCTCCTCCCTCCCCGTCCAGATCTGGGAGCGGTGGCGGCGAGCGGTGGCCGGCCGCTGGCGCCGGCGCCGGAGATGTGAAGAAGAAGGTGGAGGGGTTGAGGGAAGAAGATGAAGAAGAAATTGAAATTGAATCGGATGCCCTTGATCTCATCCGATGCTTGAGCAATCCAGATGATAATTTGACAAAGATCAAGAGTTTAGTAGAAGCCATTAAAGCTTTGGCTCCCAAACTAGGAGTGCTCTCTTTTCAGCACTGTCATAGATCTCAGAACGCAAAGGAGCTTTTAGTTTTTGTGATTCTGTCTTTTTTGTTGAGGAACTAG

Coding sequence (CDS)

ATGGTGGAGGTATCCCGTGCATCACAGGAAGATGATATATACAGAAAACGGAACGTACTTTCTGCCACGTGGCAAGTTATGATTGGGTCATATTTCCGTATCGGGTACGACGACACGTGGACCGAGTTGTCCGAATCGGGTCGGAGGGAGGTCCCTCCTCCCTCCCCGTCCAGATCTGGGAGCGGTGGCGGCGAGCGGTGGCCGGCCGCTGGCGCCGGCGCCGGAGATGTGAAGAAGAAGGTGGAGGGGTTGAGGGAAGAAGATGAAGAAGAAATTGAAATTGAATCGGATGCCCTTGATCTCATCCGATGCTTGAGCAATCCAGATGATAATTTGACAAAGATCAAGAGTTTAGTAGAAGCCATTAAAGCTTTGGCTCCCAAACTAGGAGTGCTCTCTTTTCAGCACTGTCATAGATCTCAGAACGCAAAGGAGCTTTTAGTTTTTGTGATTCTGTCTTTTTTGTTGAGGAACTAG

Protein sequence

MVEVSRASQEDDIYRKRNVLSATWQVMIGSYFRIGYDDTWTELSESGRREVPPPSPSRSGSGGGERWPAAGAGAGDVKKKVEGLREEDEEEIEIESDALDLIRCLSNPDDNLTKIKSLVEAIKALAPKLGVLSFQHCHRSQNAKELLVFVILSFLLRN

Homology

The following BLAST results are available for this feature:

BLAST of Lag0037666.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0037666.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 90..142 e-value: 3.7E-5 score: 23.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..86

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0037666	Lag0037666	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0037666.1.exon1	Lag0037666.1.exon1	exon
Lag0037666.1.exon2	Lag0037666.1.exon2	exon
Lag0037666.1.exon3	Lag0037666.1.exon3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0037666.1	cds.Lag0037666.1	CDS
cds.Lag0037666.1	cds.Lag0037666.1_2	CDS
cds.Lag0037666.1	cds.Lag0037666.1_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0037666.1	Lag0037666.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity