Lag0032465.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0032465.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionHEAT repeat-containing protein 6 isoform X1
Locationchr11: 32942743 .. 32944659 (-)
Sequence length459
RNA-Seq ExpressionLag0032465.1
SyntenyLag0032465.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGAGAACTTGGCCCACGAGGTAATGGGCCAAGTTAAGACTCCATGAATGAGCTATTTTCAACACTAAAGATAGATGTTTAGAATTTATTCAAAATGTTTTAGGATAGTCAAGGATCAATCAGCATAGCAAAGAATCATGTGCATCATGACAGAAGAAAACAAAACACATAAGGAGAGTTCATTCTTTGATATATATCTAAGAAGGTCAACAATAGTAATGATGGAACTGAAAATATGTCTCATCTCTCGCTATCAAATTGTTGACATTCTCATCAAAGCATTACTGAGTGCAAGCTTTTAAAGAATTCTGACTTCAAGCATTTGTATTCTATAATCCAACTTTAAGGGGAGGTGTAGATTTTTATTATCTAAGTAGAACATTATCTTTATCAAGATTCTAATCTTCTTCTTCTTTTTTTTTTAAAAAAAAAACAAAAAAAACAGATTCTAATATCTTTTAATCTTGTTACTTGTCTATCTTTTCCTTTTTATTTTATTTTCAGATTTGAGATCTTTCTGATTGAGAAAGTCTTCTAACTTTTAGTTAGATTATTTTTTAAAAAATTCTAACTGCACTATATTTATTTTGTAATTAGTTTCTATAAAAATAGTGAATAAGGAAATTATTTCCGAATTTAGTTTTTTTTCTTTTCTTCTACTCACTCTCTTTGGTGAGCTTGTATCTTTGAAAATTTTGTTTCTTTTCAATACTTCAGTTAAATGTTTCATTTCTTGTTAAAAAAATAAAAGTGAAATAAAACTACATTATTGTCTGATAGCAATGCAAGCATGCCACTTTCACCAGTGGAAGAGGCCACTTGAAGGAGCTTTAGATTTGTAGCATTTTTCTTTTTTATGAATTACTTTGCCACCAACTTTTTCATCATTTTATTTTTTTTTTAAGGGGTTCCTATTCAGAGTTTAAATGCACAAACAGATATATTTTTTTGTCTTTAGTGTGAAGTACGTTGTATCTGGAAGTTGTTTTTGCCACTTAATGTAGTAGTAAGTTTACTTTTTTTCTTTTTGCACCACTAGATTAAATCAAATGCTGTCAGAGCTCTTGGAAATCTTTCAAGGTTGATAAAGTTTTCGTGTTTACCTTCCTCCTGTGAGAAGCCTGTTAGCAATTCAGGGTTGTATCCAGTGGCTAATAACTCTGAGGATCTCTTGTCGAAGAGTGATTCAAAAGTTTATCCTGGATGCACATCTAAAAATCTCTATGATACAACTTCTTTCTATAATTCGAGTTTTCTCGAGAGAATAGTTCAGGCATTTATTTCTGGGATCACAACGGGAAATGTCAAGGTATGACTTGTCATGTGAAATTTAATTATCCCATCAGGCTTGCTTTAGAGATGTCTGTCTTTATAGCATTAAATATTTCATGATCACTAAAATTTAAACGTATGCTGAACAGGTCCAGTGGAATGTTTGTCATGCATTAAGCAACTTATTTTTAAATGAAACATTGAGACTGCAGGATATGGACAGGTAAAATTGAATTTAAAATGTTTGATAAAATCACATTGTCAAGTAACCAGTGTATATTCCTACTTCCTGCAATATGTTAGACTATAATTTTAAAGAATAACTTCCCTGGCCTCTTTTCAATGTAGCGTATTGTTTCTTGTTTTTTTTTTTAATAAATTAGAAAGAGAGAGAGAGAAACTTCCTTTCCAGGTCAGTCCTATAATTTTCGTGGATGGTTGTGATTGCAGGATGTGGACAGGTAAAACAGAATTAGATGTGTTTGATAAAATTAAATTGTCAAAAAAAATATATTTAAACAAACTCTTTAGGCTTAGTCAGTGATTTCAAGGTGCACTCAGGGGCTTGCCTACGGCGAGGGGCAATGCGAGGGTCACGTGGACCGCCTCTAGGTGGTATGCGAGGCAAGCACCTTCAATAA

mRNA sequence

ATGAAGGAGAACTTGGCCCACGAGATTAAATCAAATGCTGTCAGAGCTCTTGGAAATCTTTCAAGGTTGATAAAGTTTTCGTGTTTACCTTCCTCCTGTGAGAAGCCTGTTAGCAATTCAGGGTTGTATCCAGTGGCTAATAACTCTGAGGATCTCTTGTCGAAGAGTGATTCAAAAGTTTATCCTGGATGCACATCTAAAAATCTCTATGATACAACTTCTTTCTATAATTCGAGTTTTCTCGAGAGAATAGTTCAGGCATTTATTTCTGGGATCACAACGGGAAATGTCAAGGTCCAGTGGAATGTTTGTCATGCATTAAGCAACTTATTTTTAAATGAAACATTGAGACTGCAGGATATGGACAGGATGTGGACAGGGGCTTGCCTACGGCGAGGGGCAATGCGAGGGTCACGTGGACCGCCTCTAGGTGGTATGCGAGGCAAGCACCTTCAATAA

Coding sequence (CDS)

ATGAAGGAGAACTTGGCCCACGAGATTAAATCAAATGCTGTCAGAGCTCTTGGAAATCTTTCAAGGTTGATAAAGTTTTCGTGTTTACCTTCCTCCTGTGAGAAGCCTGTTAGCAATTCAGGGTTGTATCCAGTGGCTAATAACTCTGAGGATCTCTTGTCGAAGAGTGATTCAAAAGTTTATCCTGGATGCACATCTAAAAATCTCTATGATACAACTTCTTTCTATAATTCGAGTTTTCTCGAGAGAATAGTTCAGGCATTTATTTCTGGGATCACAACGGGAAATGTCAAGGTCCAGTGGAATGTTTGTCATGCATTAAGCAACTTATTTTTAAATGAAACATTGAGACTGCAGGATATGGACAGGATGTGGACAGGGGCTTGCCTACGGCGAGGGGCAATGCGAGGGTCACGTGGACCGCCTCTAGGTGGTATGCGAGGCAAGCACCTTCAATAA

Protein sequence

MKENLAHEIKSNAVRALGNLSRLIKFSCLPSSCEKPVSNSGLYPVANNSEDLLSKSDSKVYPGCTSKNLYDTTSFYNSSFLERIVQAFISGITTGNVKVQWNVCHALSNLFLNETLRLQDMDRMWTGACLRRGAMRGSRGPPLGGMRGKHLQ
Homology
[Close]
BLAST of Lag0032465.1 vs. NCBI nr
Match: XP_022159609.1 (HEAT repeat-containing protein 6 isoform X2 [Momordica charantia])

HSP 1 Score: 202.2 bits (513), Expect = 3.2e-48
Identity = 103/121 (85.12%), Postives = 109/121 (90.08%), Query Frame = 0 

Query: 4    NLAHEIKSNAVRALGNLSRLIKFSCLPSSCEKPVSNSGLYPVANNSEDLLSKSDSKVYPG 63
            N   +IKSNAVRALGNLSRLIKF C PS+CEKPVSNSGLY +AN SEDLLSKSDSKV+PG
Sbjct: 901  NDGDKIKSNAVRALGNLSRLIKFPCSPSTCEKPVSNSGLYLMANKSEDLLSKSDSKVHPG 960

Query: 64   CTSKNLYDTTSFYNSSFLERIVQAFISGITTGNVKVQWNVCHALSNLFLNETLRLQDMDR 123
            CTSKNLYDT  FYNSS LE IVQAFISGITTGNVKVQWNVCHA+SNLFLNETLRL DMDR
Sbjct: 961  CTSKNLYDT--FYNSSLLESIVQAFISGITTGNVKVQWNVCHAVSNLFLNETLRLHDMDR 1019

Query: 124  M 125
            +
Sbjct: 1021 V 1019

[Close]
BLAST of Lag0032465.1 vs. NCBI nr
Match: XP_022159610.1 (HEAT repeat-containing protein 6 isoform X3 [Momordica charantia])

HSP 1 Score: 202.2 bits (513), Expect = 3.2e-48
Identity = 103/121 (85.12%), Postives = 109/121 (90.08%), Query Frame = 0 

Query: 4    NLAHEIKSNAVRALGNLSRLIKFSCLPSSCEKPVSNSGLYPVANNSEDLLSKSDSKVYPG 63
            N   +IKSNAVRALGNLSRLIKF C PS+CEKPVSNSGLY +AN SEDLLSKSDSKV+PG
Sbjct: 901  NDGDKIKSNAVRALGNLSRLIKFPCSPSTCEKPVSNSGLYLMANKSEDLLSKSDSKVHPG 960

Query: 64   CTSKNLYDTTSFYNSSFLERIVQAFISGITTGNVKVQWNVCHALSNLFLNETLRLQDMDR 123
            CTSKNLYDT  FYNSS LE IVQAFISGITTGNVKVQWNVCHA+SNLFLNETLRL DMDR
Sbjct: 961  CTSKNLYDT--FYNSSLLESIVQAFISGITTGNVKVQWNVCHAVSNLFLNETLRLHDMDR 1019

Query: 124  M 125
            +
Sbjct: 1021 V 1019

[Close]
BLAST of Lag0032465.1 vs. NCBI nr
Match: XP_022159611.1 (HEAT repeat-containing protein 6 isoform X4 [Momordica charantia])

HSP 1 Score: 202.2 bits (513), Expect = 3.2e-48
Identity = 103/121 (85.12%), Postives = 109/121 (90.08%), Query Frame = 0 

Query: 4   NLAHEIKSNAVRALGNLSRLIKFSCLPSSCEKPVSNSGLYPVANNSEDLLSKSDSKVYPG 63
           N   +IKSNAVRALGNLSRLIKF C PS+CEKPVSNSGLY +AN SEDLLSKSDSKV+PG
Sbjct: 691 NDGDKIKSNAVRALGNLSRLIKFPCSPSTCEKPVSNSGLYLMANKSEDLLSKSDSKVHPG 750

Query: 64  CTSKNLYDTTSFYNSSFLERIVQAFISGITTGNVKVQWNVCHALSNLFLNETLRLQDMDR 123
           CTSKNLYDT  FYNSS LE IVQAFISGITTGNVKVQWNVCHA+SNLFLNETLRL DMDR
Sbjct: 751 CTSKNLYDT--FYNSSLLESIVQAFISGITTGNVKVQWNVCHAVSNLFLNETLRLHDMDR 809

Query: 124 M 125
           +
Sbjct: 811 V 809

[Close]
BLAST of Lag0032465.1 vs. NCBI nr
Match: XP_022159607.1 (HEAT repeat-containing protein 6 isoform X1 [Momordica charantia])

HSP 1 Score: 202.2 bits (513), Expect = 3.2e-48
Identity = 103/121 (85.12%), Postives = 109/121 (90.08%), Query Frame = 0 

Query: 4    NLAHEIKSNAVRALGNLSRLIKFSCLPSSCEKPVSNSGLYPVANNSEDLLSKSDSKVYPG 63
            N   +IKSNAVRALGNLSRLIKF C PS+CEKPVSNSGLY +AN SEDLLSKSDSKV+PG
Sbjct: 901  NDGDKIKSNAVRALGNLSRLIKFPCSPSTCEKPVSNSGLYLMANKSEDLLSKSDSKVHPG 960

Query: 64   CTSKNLYDTTSFYNSSFLERIVQAFISGITTGNVKVQWNVCHALSNLFLNETLRLQDMDR 123
            CTSKNLYDT  FYNSS LE IVQAFISGITTGNVKVQWNVCHA+SNLFLNETLRL DMDR
Sbjct: 961  CTSKNLYDT--FYNSSLLESIVQAFISGITTGNVKVQWNVCHAVSNLFLNETLRLHDMDR 1019

Query: 124  M 125
            +
Sbjct: 1021 V 1019

[Close]
BLAST of Lag0032465.1 vs. NCBI nr
Match: KAA0042623.1 (HEAT repeat-containing protein 6 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 198.7 bits (504), Expect = 3.5e-47
Identity = 102/121 (84.30%), Postives = 107/121 (88.43%), Query Frame = 0 

Query: 4    NLAHEIKSNAVRALGNLSRLIKFSCLPSSCEKPVSNSGLYPVANNSEDLLSKSDSKVYPG 63
            N   +IKSNAVRALGNLSRLIKFSCL S CE+P SNSGLY VANNSEDL SK DSKV  G
Sbjct: 880  NDGDKIKSNAVRALGNLSRLIKFSCLLSPCERPRSNSGLYSVANNSEDLFSKDDSKVNLG 939

Query: 64   CTSKNLYDTTSFYNSSFLERIVQAFISGITTGNVKVQWNVCHALSNLFLNETLRLQDMDR 123
            CTSKNL D  SFY+SSFLERIVQAFISGITTGNVKVQWNVCHALSNLFLNETLRLQD+DR
Sbjct: 940  CTSKNLSDKNSFYSSSFLERIVQAFISGITTGNVKVQWNVCHALSNLFLNETLRLQDIDR 999

Query: 124  M 125
            +
Sbjct: 1000 V 1000

The following BLAST results are available for this feature:
BLAST of Lag0032465.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022159609.13.2e-4885.12HEAT repeat-containing protein 6 isoform X2 [Momordica charantia][more]
XP_022159610.13.2e-4885.12HEAT repeat-containing protein 6 isoform X3 [Momordica charantia][more]
XP_022159611.13.2e-4885.12HEAT repeat-containing protein 6 isoform X4 [Momordica charantia][more]
XP_022159607.13.2e-4885.12HEAT repeat-containing protein 6 isoform X1 [Momordica charantia][more]
KAA0042623.13.5e-4784.30HEAT repeat-containing protein 6 isoform X1 [Cucumis melo var. makuwa][more]
BLAST of Lag0032465.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR13366MALARIA ANTIGEN-RELATEDcoord: 9..122
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 7..114

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0032465Lag0032465gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0032465.1.exon5Lag0032465.1.exon5exon
Lag0032465.1.exon4Lag0032465.1.exon4exon
Lag0032465.1.exon3Lag0032465.1.exon3exon
Lag0032465.1.exon2Lag0032465.1.exon2exon
Lag0032465.1.exon1Lag0032465.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0032465.1cds.Lag0032465.1_5CDS
cds.Lag0032465.1cds.Lag0032465.1_4CDS
cds.Lag0032465.1cds.Lag0032465.1_3CDS
cds.Lag0032465.1cds.Lag0032465.1_2CDS
cds.Lag0032465.1cds.Lag0032465.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0032465.1Lag0032465.1-proteinpolypeptide