Lag0032422.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0032422.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr11: 32249536 .. 32249907 (+)
Sequence length303
RNA-Seq ExpressionLag0032422.1
SyntenyLag0032422.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTACAGCAAACCCGAAAGGGCACAATGAAGATGCACGAATATCTTGATACAATGAAGAAATATTTCAATAATCTCCATGTTTTTGGATTTCCTTTGGATATGCGTAGCTTCGCTTCTCATGTAACTGCAGGGTTGGATGATGAGTATACTCCAATAGTATGTGTAATATGAAGCCTAAATTTGACTTGGAGTGAAATACAACTGGAACTTTTCTCGTTTGAACAGAGATTAGAAAGACTTCAAGCCTTAAAAGGCAACATTTCGGTGAACTTGAGCTCCACTAATCTCCCATCTGTGAATATGGCTCAAGTTGTAGGTCAGAGAGCTGGATCTCAATCTCAAAACTCCAACCACTACAATCAGAACTGA

mRNA sequence

ATGCTACAGCAAACCCGAAAGGGCACAATGAAGATGCACGAATATCTTGATACAATGAAGAAATATTTCAATAATCTCCATGTTTTTGGATTTCCTTTGGATATGCGTAGCTTCGCTTCTCATGTAACTGCAGGGTTGGATGATGAGTATACTCCAATAAGATTAGAAAGACTTCAAGCCTTAAAAGGCAACATTTCGGTGAACTTGAGCTCCACTAATCTCCCATCTGTGAATATGGCTCAAGTTGTAGGTCAGAGAGCTGGATCTCAATCTCAAAACTCCAACCACTACAATCAGAACTGA

Coding sequence (CDS)

ATGCTACAGCAAACCCGAAAGGGCACAATGAAGATGCACGAATATCTTGATACAATGAAGAAATATTTCAATAATCTCCATGTTTTTGGATTTCCTTTGGATATGCGTAGCTTCGCTTCTCATGTAACTGCAGGGTTGGATGATGAGTATACTCCAATAAGATTAGAAAGACTTCAAGCCTTAAAAGGCAACATTTCGGTGAACTTGAGCTCCACTAATCTCCCATCTGTGAATATGGCTCAAGTTGTAGGTCAGAGAGCTGGATCTCAATCTCAAAACTCCAACCACTACAATCAGAACTGA

Protein sequence

MLQQTRKGTMKMHEYLDTMKKYFNNLHVFGFPLDMRSFASHVTAGLDDEYTPIRLERLQALKGNISVNLSSTNLPSVNMAQVVGQRAGSQSQNSNHYNQN
Homology
BLAST of Lag0032422.1 vs. NCBI nr
Match: XP_038875081.1 (uncharacterized protein LOC120067610 [Benincasa hispida])

HSP 1 Score: 59.3 bits (142), Expect = 2.2e-05
Identity = 47/127 (37.01%), Postives = 61/127 (48.03%), Query Frame = 0

Query: 1   MLQQTRKGTMKMHEYLDTMKKYFNNLHVFGFPLDMRSFASHVTAGLDDEYTPI------- 60
           M QQTRK T+KM EYL   KKY +NL   G P+      S V +GLD+EY P+       
Sbjct: 31  MFQQTRKATLKMSEYLTLTKKYADNLAFAGPPMSPPDLISQVLSGLDEEYNPVVVAVKSK 90

Query: 61  -----------------RLERLQALKGNIS--VNLS-STNLPSVNMAQVVGQRAGSQSQN 101
                            RLE   A+K NI+   N+S S+N PSVN+ Q       +  +N
Sbjct: 91  GTTRWSDLQSDLLSYEKRLEYQLAIKTNITGMTNVSISSNSPSVNVVQNSPSTLSNPYRN 150

BLAST of Lag0032422.1 vs. NCBI nr
Match: QWX09785.1 (hydroxymethylglutaryl-CoA synthase [Pistacia terebinthus subsp. palaestina])

HSP 1 Score: 58.5 bits (140), Expect = 3.7e-05
Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 0

Query: 2   LQQTRKGTMKMHEYLDTMKKYFNNLHVFGFPLDMRSFASHVTAGLDDEYTPI 54
           LQ+TRKG MKM EYL TMK + +NL + G P+ +    + +  GLD EYTPI
Sbjct: 151 LQKTRKGRMKMEEYLTTMKAFSDNLTLAGSPISLSDLITQILIGLDAEYTPI 202

BLAST of Lag0032422.1 vs. NCBI nr
Match: KAE8652677.1 (hypothetical protein Csa_014062 [Cucumis sativus])

HSP 1 Score: 54.3 bits (129), Expect = 7.0e-04
Identity = 26/53 (49.06%), Postives = 33/53 (62.26%), Query Frame = 0

Query: 1   MLQQTRKGTMKMHEYLDTMKKYFNNLHVFGFPLDMRSFASHVTAGLDDEYTPI 54
           +LQ TRKGTM+M EYL  MK+   N+ + G P+      S+V  GLD EY PI
Sbjct: 169 ILQNTRKGTMRMTEYLSMMKQTLENMQLAGSPISHEDLFSYVLVGLDVEYIPI 221

BLAST of Lag0032422.1 vs. NCBI nr
Match: KZV34405.1 (hypothetical protein F511_34028, partial [Dorcoceras hygrometricum])

HSP 1 Score: 53.9 bits (128), Expect = 9.2e-04
Identity = 26/52 (50.00%), Postives = 34/52 (65.38%), Query Frame = 0

Query: 2   LQQTRKGTMKMHEYLDTMKKYFNNLHVFGFPLDMRSFASHVTAGLDDEYTPI 54
           LQ+T+KG MKM EYL TMK   +NL + G P+ +      + +GLD EYTPI
Sbjct: 105 LQKTKKGGMKMEEYLTTMKAIADNLAMAGNPIPLPDLIVQILSGLDAEYTPI 156

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038875081.12.2e-0537.01uncharacterized protein LOC120067610 [Benincasa hispida][more]
QWX09785.13.7e-0551.92hydroxymethylglutaryl-CoA synthase [Pistacia terebinthus subsp. palaestina][more]
KAE8652677.17.0e-0449.06hypothetical protein Csa_014062 [Cucumis sativus][more]
KZV34405.19.2e-0450.00hypothetical protein F511_34028, partial [Dorcoceras hygrometricum][more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0032422Lag0032422gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0032422.1.exon1Lag0032422.1.exon1exon
Lag0032422.1.exon2Lag0032422.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0032422.1cds.Lag0032422.1CDS
cds.Lag0032422.1cds.Lag0032422.1_2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0032422.1Lag0032422.1-proteinpolypeptide