Lag0031518.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0031518.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr11: 9530834 .. 9531172 (+)
Sequence length339
RNA-Seq ExpressionLag0031518.1
SyntenyLag0031518.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATGATGCTTGAAGAGAGGCCCGGGAACTTCCTAGGCCTCCCCAAGCATTTTCCCCAGAAGAGTGTATGCACCCCTGGGATGACCATGACGCTTGAAGAGAGGCCCGGGAACTTCCTAGGCCTCCCCAAGCATTTTCCCCAGAAGAGTGTACGCACCCCTGGGATGACCATGACGCTTGAAGAGAGACCCGGGAACTTTCTAGGCCTCCCCAAGCCTTTTCCCCAGAAGAGTGTGTGCACCCCTAGGATGACCATGATGCTTGAAGAGAGGCTCGGGAACTTCCTTGGCCTCCCCAAGCTTTTTCCCAAAAGAGTGTACGCACCCCTAGGATGA

mRNA sequence

ATGGCCATGATGCTTGAAGAGAGGCCCGGGAACTTCCTAGGCCTCCCCAAGCATTTTCCCCAGAAGAGTGTATGCACCCCTGGGATGACCATGACGCTTGAAGAGAGGCCCGGGAACTTCCTAGGCCTCCCCAAGCATTTTCCCCAGAAGAGTGTACGCACCCCTGGGATGACCATGACGCTTGAAGAGAGACCCGGGAACTTTCTAGGCCTCCCCAAGCCTTTTCCCCAGAAGAGTGTGTGCACCCCTAGGATGACCATGATGCTTGAAGAGAGGCTCGGGAACTTCCTTGGCCTCCCCAAGCTTTTTCCCAAAAGAGTGTACGCACCCCTAGGATGA

Coding sequence (CDS)

ATGGCCATGATGCTTGAAGAGAGGCCCGGGAACTTCCTAGGCCTCCCCAAGCATTTTCCCCAGAAGAGTGTATGCACCCCTGGGATGACCATGACGCTTGAAGAGAGGCCCGGGAACTTCCTAGGCCTCCCCAAGCATTTTCCCCAGAAGAGTGTACGCACCCCTGGGATGACCATGACGCTTGAAGAGAGACCCGGGAACTTTCTAGGCCTCCCCAAGCCTTTTCCCCAGAAGAGTGTGTGCACCCCTAGGATGACCATGATGCTTGAAGAGAGGCTCGGGAACTTCCTTGGCCTCCCCAAGCTTTTTCCCAAAAGAGTGTACGCACCCCTAGGATGA

Protein sequence

MAMMLEERPGNFLGLPKHFPQKSVCTPGMTMTLEERPGNFLGLPKHFPQKSVRTPGMTMTLEERPGNFLGLPKPFPQKSVCTPRMTMMLEERLGNFLGLPKLFPKRVYAPLG
Homology
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BLAST of Lag0031518.1 vs. NCBI nr
Match: WP_053484569.1 (hypothetical protein [Lysinibacillus sp. FJAT-14745] >KOP77966.1 hypothetical protein AMS59_15140 [Lysinibacillus sp. FJAT-14745])

HSP 1 Score: 65.9 bits (159), Expect = 2.6e-07
Identity = 38/99 (38.38%), Postives = 50/99 (50.51%), Query Frame = 0 

Query: 9   PGNFLGLPKHFPQKSVCTPGMTMTLEERPGNFLGLPKHFPQKSVRTPGMTMTLEERPGNF 68
           P  FLGLP+ FP     + G+     + P  FLGLP+ FP    R  G+     + P  F
Sbjct: 41  PERFLGLPEQFPDLPERSLGLPKQFPDLPERFLGLPEQFPDLPERFLGLPEQFPDLPERF 100

Query: 69  LGLPKPF---PQKSVCTPRMTMMLEERLGNFLGLPKLFP 105
           LGLP+ F   P++ +  P     L ER   FLGLP+ FP
Sbjct: 101 LGLPEQFPDLPERFLGLPEQFPDLPER---FLGLPEQFP 136

The following BLAST results are available for this feature:
BLAST of Lag0031518.1 vs. NCBI nr
Match NameE-valueIdentityDescription
WP_053484569.12.6e-0738.38hypothetical protein [Lysinibacillus sp. FJAT-14745] >KOP77966.1 hypothetical pr... [more]
BLAST of Lag0031518.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0031518Lag0031518gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0031518.1.exon1Lag0031518.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0031518.1cds.Lag0031518.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0031518.1Lag0031518.1-proteinpolypeptide