Lag0031311.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0031311.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Epidermal patterning factor-like protein
Location	chr11: 7005074 .. 7005499 (-)
Sequence length	324
RNA-Seq Expression	Lag0031311.1
Synteny	Lag0031311.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCCCAAGCAATCTTCCCAAACCCGTCGTCGCCATCGCCGTCGCTGTCATCTTCTCCCTCTTGCTTCCTCTTCCCATATCATCAGGTAAAGAAAAAAAAAAAACTCTTTTTAACAATTTTTTTCTTCAGATCAAAAAAATTAAGCAGCTGGAAAAATGATGCATCTGCAATAATCTGTGTATCTCAGCTCCAGCAGCGGGCGGCGGCGAGAGTTTGTGGAAGAAGACGGTGTTGGGGTCGAAGCCGCCGCAATGCATCGGAAAGTGCTTGAATTGCCGGCCGTGTACGGCGGCGCTGGTGGTGCCGGAGCACCGTGAGAGGAAGGGATTTGAAGCTGATTTGCACCGTAGAGAAGAAGATGATAGCTATTATCTTTTGCATTGGAAATGTAAATGTGGGAATAAGCTTTATCAGCCATGA

mRNA sequence

ATGGCTTCCCCAAGCAATCTTCCCAAACCCGTCGTCGCCATCGCCGTCGCTGTCATCTTCTCCCTCTTGCTTCCTCTTCCCATATCATCAGCTCCAGCAGCGGGCGGCGGCGAGAGTTTGTGGAAGAAGACGGTGTTGGGGTCGAAGCCGCCGCAATGCATCGGAAAGTGCTTGAATTGCCGGCCGTGTACGGCGGCGCTGGTGGTGCCGGAGCACCGTGAGAGGAAGGGATTTGAAGCTGATTTGCACCGTAGAGAAGAAGATGATAGCTATTATCTTTTGCATTGGAAATGTAAATGTGGGAATAAGCTTTATCAGCCATGA

Coding sequence (CDS)

ATGGCTTCCCCAAGCAATCTTCCCAAACCCGTCGTCGCCATCGCCGTCGCTGTCATCTTCTCCCTCTTGCTTCCTCTTCCCATATCATCAGCTCCAGCAGCGGGCGGCGGCGAGAGTTTGTGGAAGAAGACGGTGTTGGGGTCGAAGCCGCCGCAATGCATCGGAAAGTGCTTGAATTGCCGGCCGTGTACGGCGGCGCTGGTGGTGCCGGAGCACCGTGAGAGGAAGGGATTTGAAGCTGATTTGCACCGTAGAGAAGAAGATGATAGCTATTATCTTTTGCATTGGAAATGTAAATGTGGGAATAAGCTTTATCAGCCATGA

Protein sequence

MASPSNLPKPVVAIAVAVIFSLLLPLPISSAPAAGGGESLWKKTVLGSKPPQCIGKCLNCRPCTAALVVPEHRERKGFEADLHRREEDDSYYLLHWKCKCGNKLYQP

Homology

[Close]

BLAST of Lag0031311.1 vs. NCBI nr
Match: XP_023525861.1 (EPIDERMAL PATTERNING FACTOR-like protein 8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203.4 bits (516), Expect = 1.0e-48
Identity = 95/107 (88.79%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 1   MASPSNLPKPVVAIAVAVIFSLLLPLPISSAPAAGGGESLWKKTVLGSKPPQCIGKCLNC 60
           MASPSNL K V+A+AVA +FSLLLPLP  SAPAAGGGESLWKK VLGSKPP+CIGKCLNC
Sbjct: 1   MASPSNLLKLVIAVAVAAVFSLLLPLPALSAPAAGGGESLWKKMVLGSKPPRCIGKCLNC 60

Query: 61  RPCTAALVVPEHRERKGFEADLHRREEDDSYYLLHWKCKCGNKLYQP 108
           RPCTA+LVVPEHRERKGFEADL+RREEDDSYYLLHWKCKCGNKLYQP
Sbjct: 61  RPCTASLVVPEHRERKGFEADLNRREEDDSYYLLHWKCKCGNKLYQP 107

[Close]

BLAST of Lag0031311.1 vs. NCBI nr
Match: XP_022948690.1 (EPIDERMAL PATTERNING FACTOR-like protein 8 [Cucurbita moschata])

HSP 1 Score: 201.4 bits (511), Expect = 3.8e-48
Identity = 93/107 (86.92%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MASPSNLPKPVVAIAVAVIFSLLLPLPISSAPAAGGGESLWKKTVLGSKPPQCIGKCLNC 60
           MASPSNL K V+A+AVA +FSLLLPLP  SAPA GGGESLWKK VLGSKPP+C+GKCLNC
Sbjct: 1   MASPSNLLKLVIAVAVAAVFSLLLPLPALSAPAVGGGESLWKKMVLGSKPPRCVGKCLNC 60

Query: 61  RPCTAALVVPEHRERKGFEADLHRREEDDSYYLLHWKCKCGNKLYQP 108
           RPCTA+LVVPEHRERKGFEADL+RREEDDSYYLLHWKCKCGNKLYQP
Sbjct: 61  RPCTASLVVPEHRERKGFEADLNRREEDDSYYLLHWKCKCGNKLYQP 107

[Close]

BLAST of Lag0031311.1 vs. NCBI nr
Match: XP_022998271.1 (EPIDERMAL PATTERNING FACTOR-like protein 8 [Cucurbita maxima])

HSP 1 Score: 200.7 bits (509), Expect = 6.5e-48
Identity = 93/107 (86.92%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MASPSNLPKPVVAIAVAVIFSLLLPLPISSAPAAGGGESLWKKTVLGSKPPQCIGKCLNC 60
           MASPSNL K V+A+AVA +FSL LPLP  SAPAAGGGESLWKK VLGSKPP+C+GKCLNC
Sbjct: 1   MASPSNLLKLVIAVAVAAVFSLSLPLPALSAPAAGGGESLWKKMVLGSKPPRCVGKCLNC 60

Query: 61  RPCTAALVVPEHRERKGFEADLHRREEDDSYYLLHWKCKCGNKLYQP 108
           RPCTA+LVVPEHRERKGFEADL+RREEDDSYYLLHWKCKCGNKLYQP
Sbjct: 61  RPCTASLVVPEHRERKGFEADLNRREEDDSYYLLHWKCKCGNKLYQP 107

[Close]

BLAST of Lag0031311.1 vs. NCBI nr
Match: KAG6606797.1 (EPIDERMAL PATTERNING FACTOR-like protein 8, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036508.1 EPIDERMAL PATTERNING FACTOR-like protein 8 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199.1 bits (505), Expect = 1.9e-47
Identity = 92/107 (85.98%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 1   MASPSNLPKPVVAIAVAVIFSLLLPLPISSAPAAGGGESLWKKTVLGSKPPQCIGKCLNC 60
           MASPSNL K V+A+AVA +FSLLLPLP  SAPA GGGESLWKK VLGSKPP+C+GKCLNC
Sbjct: 1   MASPSNLLKLVIAVAVAAVFSLLLPLPALSAPAVGGGESLWKKMVLGSKPPRCVGKCLNC 60

Query: 61  RPCTAALVVPEHRERKGFEADLHRREEDDSYYLLHWKCKCGNKLYQP 108
           RPC A+LVVPEHRERKGFEADL+RREEDDSYYLLHWKCKCGNKLYQP
Sbjct: 61  RPCMASLVVPEHRERKGFEADLNRREEDDSYYLLHWKCKCGNKLYQP 107

[Close]

BLAST of Lag0031311.1 vs. NCBI nr
Match: XP_038876854.1 (EPIDERMAL PATTERNING FACTOR-like protein 8 [Benincasa hispida])

HSP 1 Score: 170.6 bits (431), Expect = 7.2e-39
Identity = 85/107 (79.44%), Postives = 93/107 (86.92%), Query Frame = 0


Query: 1   MASPSNLPKPVVAIAVAVIFSLLLPLPISSAPAAGGGESLWKKTVLGSKPPQCIGKCLNC 60
           MASP ++ K  + IA+AV+FSLLLPLP SS  A G  ESL KK VLGSKPP+C+GKCLNC
Sbjct: 1   MASPRSVLK--LVIAIAVVFSLLLPLPTSS--ALGDIESLQKKMVLGSKPPRCVGKCLNC 60

Query: 61  RPCTAALVVPEHRERKGFEADLHRREEDDSYYLLHWKCKCGNKLYQP 108
           RPCTAALVVPEHRERKGFEA+L RREEDDSYYLLHWKCKCGNKLYQP
Sbjct: 61  RPCTAALVVPEHRERKGFEANLDRREEDDSYYLLHWKCKCGNKLYQP 103

[Close]

BLAST of Lag0031311.1 vs. ExPASy Swiss-Prot
Match: Q1G3V9 (EPIDERMAL PATTERNING FACTOR-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=EPFL8 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-07
Identity = 35/97 (36.08%), Postives = 52/97 (53.61%), Query Frame = 0


Query: 13  AIAVAVIFSLLLPLPISSAPAAGGGESLWKKTVLGSKPPQCIGKCLNCRPCTAALVVPEH 72
           A+ VA IF  LL L   S   A G +   K++V+GS+PP C  KC NC+PC   L     
Sbjct: 15  ALFVANIFFSLLSLHCIS--GAHGHQQRMKESVMGSEPPVCATKCRNCKPCLPYL----- 74

Query: 73  RERKGFEADLHRREEDDS--YYLLHWKCKCGNKLYQP 108
                F+      ++DDS  YY + W C+C +++++P
Sbjct: 75  -----FDIRGAHDDDDDSEPYYPVKWICRCRDRVFEP 99

[Close]

BLAST of Lag0031311.1 vs. ExPASy Swiss-Prot
Match: Q1PEY6 (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EPFL6 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.1e-05
Identity = 26/63 (41.27%), Postives = 28/63 (44.44%), Query Frame = 0


Query: 46  LGSKPPQCIGKCLNCRPCTAALV-VPEHRERKGFEADLHRREEDDSYYLLHWKCKCGNKL 105
           LGS PP+C  KC  C PC    V VP                    YY   W+CKCGNKL
Sbjct: 106 LGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTA------------EYYPEAWRCKCGNKL 156

Query: 106 YQP 108
           Y P
Sbjct: 166 YMP 156

[Close]

BLAST of Lag0031311.1 vs. ExPASy Swiss-Prot
Match: Q2V3I3 (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.1e-04
Identity = 25/62 (40.32%), Postives = 29/62 (46.77%), Query Frame = 0


Query: 47  GSKPPQCIGKCLNCRPCTAALVVPEHRE-RKGFEADLHRREEDDSYYLLHWKCKCGNKLY 106
           GS PP C  KC  C+PC      P H   + G    L        YY   W+CKCGNKL+
Sbjct: 60  GSSPPTCRSKCGKCQPCK-----PVHVPIQPGLSMPL-------EYYPEAWRCKCGNKLF 109

Query: 107 QP 108
            P
Sbjct: 120 MP 109

[Close]

BLAST of Lag0031311.1 vs. ExPASy Swiss-Prot
Match: P43212 (Polygalacturonase OS=Cryptomeria japonica OX=3369 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.1e-04
Identity = 23/65 (35.38%), Postives = 30/65 (46.15%), Query Frame = 0


Query: 43  KTVLGSKPPQCIGKCLNCRPCTAALVVPEHRERKGFEADLHRREEDDSYYLLHWKCKCGN 102
           + +LGS+PP C  KC  C PC A LV+            +HR    + YY   W C    
Sbjct: 463 RILLGSRPPNCTNKCHGCSPCKAKLVI------------VHRIMPQE-YYPQRWMCSRHG 514

Query: 103 KLYQP 108
           K+Y P
Sbjct: 523 KIYHP 514

[Close]

BLAST of Lag0031311.1 vs. ExPASy Swiss-Prot
Match: Q9LUH9 (EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EPFL5 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.5e-04
Identity = 25/61 (40.98%), Postives = 28/61 (45.90%), Query Frame = 0


Query: 47  GSKPPQCIGKCLNCRPCTAALVVPEHRERKGFEADLHRREEDDSYYLLHWKCKCGNKLYQ 106
           GS PP C  KC  C PC A  V  +     G    L        YY   W+CKCGNKL+ 
Sbjct: 58  GSVPPMCRLKCGKCEPCKAVHVPIQ----PGLIMPL-------EYYPEAWRCKCGNKLFM 107

Query: 107 P 108
           P
Sbjct: 118 P 107

The following BLAST results are available for this feature:

BLAST of Lag0031311.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023525861.1	1.0e-48	88.79	EPIDERMAL PATTERNING FACTOR-like protein 8 [Cucurbita pepo subsp. pepo]	[more]
XP_022948690.1	3.8e-48	86.92	EPIDERMAL PATTERNING FACTOR-like protein 8 [Cucurbita moschata]	[more]
XP_022998271.1	6.5e-48	86.92	EPIDERMAL PATTERNING FACTOR-like protein 8 [Cucurbita maxima]	[more]
KAG6606797.1	1.9e-47	85.98	EPIDERMAL PATTERNING FACTOR-like protein 8, partial [Cucurbita argyrosperma subs...	[more]
XP_038876854.1	7.2e-39	79.44	EPIDERMAL PATTERNING FACTOR-like protein 8 [Benincasa hispida]	[more]

BLAST of Lag0031311.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1G3V9	1.5e-07	36.08	EPIDERMAL PATTERNING FACTOR-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q1PEY6	4.1e-05	41.27	EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q2V3I3	2.1e-04	40.32	EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
P43212	2.1e-04	35.38	Polygalacturonase OS=Cryptomeria japonica OX=3369 PE=1 SV=1	[more]
Q9LUH9	3.5e-04	40.98	EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF17181	EPF	coord: 45..107 e-value: 3.5E-20 score: 71.7
None	No IPR available	PANTHER	PTHR33109:SF57	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN	coord: 11..107
IPR039455	EPIDERMAL PATTERNING FACTOR-like protein	PANTHER	PTHR33109	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4	coord: 11..107

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0031311	Lag0031311	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0031311.1.exon2	Lag0031311.1.exon2	exon
Lag0031311.1.exon1	Lag0031311.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0031311.1	cds.Lag0031311.1_2	CDS
cds.Lag0031311.1	cds.Lag0031311.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0031311.1	Lag0031311.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010374	stomatal complex development
biological_process	GO:0010052	guard cell differentiation
cellular_component	GO:0005576	extracellular region