Lag0031222.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0031222.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr11: 5938501 .. 5939750 (+)
Sequence length396
RNA-Seq ExpressionLag0031222.1
SyntenyLag0031222.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGTATATGCATGCCTCCTAATTTCCATCTTATTATTACTCTTTCAAACTGTTTGGATTTCAGCCATTCCCAATAATGCTTCTTCTTTGGAATATGGAGTTTCCAACCACTCAATCAACTCTCTATCTGTTCAACACAATCATCAAGTTTTAGGTGAGAGATTCGAACATTTGCTCCTCTTTCTTTTCGTTTTATTGGTTTTAGATGTGAAGTTTTGTGATAAATAATATTCATGAGAGTGGCAGAATTATCTGATGTGTTTTACCTTTTGTTTATAGTAGCTTTCAATTTTGAAAATTTGGCAAGACGGGTTATGGTAAAGAAAAGTTTTGTGACATGGGAGCGAACGAAAAATTTTCATTGGAAGTGATGAAATTATTTGAAGTTTTTTTTTTTAAAAAAATATATTTTTAACTTTTAGTTTTCATGAGAGAGTGGTAAAATTGTTTGATGTTTAGCTTTTGATTTTGAATATTTTGTAGGGAGGATTTAGGAAAGTTTTGTTAAAAAGAAGGTAGAACTAGAAATTTTGATGGGAGTGACAAAATTATTTGATATTTATTATTATTTTTTTTATATAACATAATCTTTCAATTTTGAAATTTTAATTAGGCAAGTCATAGATAAGAGTTTGAATTCTTTAACTTTTGATATAATTTTTTTTCAATATAATCTACAACAGAGTGAAAGATAATTGTTCCTATTTAAAAATAGAGCAACGAAGGAAGAAGGAGGATAATTACTTTAGTTCGTCTTAGGTTAAGAAAAATATATATATAGAACAGTTACATGTGATGTTAAAGTTTTCTTCTCAATTTATGCTCCTTAACGTAAGTGTCATTTTTCTTTCTTCACTCCATCTTGACAAGGTATATATGTATGTGTATGTGTGTGTATTTTTACGATCATAAAAATAAAATTGTCTTTCGTATGAAAATGTCTAGCTCTGCTCTAGTCATGCTGACGAGAGAGATTTTATTTCTTTTTTTTTTCCTCCTGGTCTTTAGTGAGCCCAAGGGGGACCGGGGGCGGCGGCGGAGAGAATAGGACGGTGGCGGATTGGATTGTTTTAAGGGCGAAAGGGGGAAGGTCCGGCGGCGTGGGCGGCTCCAACATCAACCACCGGCCGGGGAAGGCGAACCAGAAGAACGCAGCTTCAAATTTGTTAAAGTCTACTTACTTTGCTGCCAACTCTGCTGGTCTCATCCTATTTCTACTTGTTTTAATCTTCCTTATGAGTTTTTAA

mRNA sequence

ATGGGAGTATATGCATGCCTCCTAATTTCCATCTTATTATTACTCTTTCAAACTGTTTGGATTTCAGCCATTCCCAATAATGCTTCTTCTTTGGAATATGGAGTTTCCAACCACTCAATCAACTCTCTATCTGTTCAACACAATCATCAAGTTTTAGTGAGCCCAAGGGGGACCGGGGGCGGCGGCGGAGAGAATAGGACGGTGGCGGATTGGATTGTTTTAAGGGCGAAAGGGGGAAGGTCCGGCGGCGTGGGCGGCTCCAACATCAACCACCGGCCGGGGAAGGCGAACCAGAAGAACGCAGCTTCAAATTTGTTAAAGTCTACTTACTTTGCTGCCAACTCTGCTGGTCTCATCCTATTTCTACTTGTTTTAATCTTCCTTATGAGTTTTTAA

Coding sequence (CDS)

ATGGGAGTATATGCATGCCTCCTAATTTCCATCTTATTATTACTCTTTCAAACTGTTTGGATTTCAGCCATTCCCAATAATGCTTCTTCTTTGGAATATGGAGTTTCCAACCACTCAATCAACTCTCTATCTGTTCAACACAATCATCAAGTTTTAGTGAGCCCAAGGGGGACCGGGGGCGGCGGCGGAGAGAATAGGACGGTGGCGGATTGGATTGTTTTAAGGGCGAAAGGGGGAAGGTCCGGCGGCGTGGGCGGCTCCAACATCAACCACCGGCCGGGGAAGGCGAACCAGAAGAACGCAGCTTCAAATTTGTTAAAGTCTACTTACTTTGCTGCCAACTCTGCTGGTCTCATCCTATTTCTACTTGTTTTAATCTTCCTTATGAGTTTTTAA

Protein sequence

MGVYACLLISILLLLFQTVWISAIPNNASSLEYGVSNHSINSLSVQHNHQVLVSPRGTGGGGGENRTVADWIVLRAKGGRSGGVGGSNINHRPGKANQKNAASNLLKSTYFAANSAGLILFLLVLIFLMSF
Homology
[Close]
BLAST of Lag0031222.1 vs. NCBI nr
Match: KAG6581619.1 (hypothetical protein SDJN03_21621, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.4 bits (246), Expect = 2.5e-17
Identity = 68/126 (53.97%), Postives = 82/126 (65.08%), Query Frame = 0 

Query: 1   MGVYACLLISILLLLFQTVWISAIPNNASSLEYGVSNHSINSLSVQHNHQVLVSPRGTGG 60
           MGVYACLLIS LLL+FQT  IS++ N +      +SNHS NS  +QH+HQ+LVS R    
Sbjct: 1   MGVYACLLIS-LLLIFQTHSISSLSNGS----LPISNHSFNSQPLQHHHQLLVSGR---D 60

Query: 61  GGGENRTVADWIVLRAKGGRSGGVGGSNINHRPGKANQKNAASNLLKST--YFAANSAGL 120
            G EN T    +VL+AKGGRSG  G    NHRPGKA  KNAA++L +    YF  NSAGL
Sbjct: 61  DGEENTTTVKLVVLKAKGGRSGSAGAGTNNHRPGKA--KNAAASLFEFNIIYFVLNSAGL 116

Query: 121 ILFLLV 125
            LF  +
Sbjct: 121 FLFFYI 116

[Close]
BLAST of Lag0031222.1 vs. NCBI nr
Match: KAG6606846.1 (hypothetical protein SDJN03_00188, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-12
Identity = 59/109 (54.13%), Postives = 68/109 (62.39%), Query Frame = 0 

Query: 1   MGVYACLLISILLLLFQTVWISAIPNNASSLEYGVSNHSINSLSVQHNHQVLVSPRGTGG 60
           MG YACLLIS LLL FQ    S +P+N        SNHSINSL       +++ P G   
Sbjct: 1   MGAYACLLIS-LLLFFQLPNASPLPSN--------SNHSINSL------PLVIPPGGGDT 60

Query: 61  GGGENRTVADWIVLRAK-GGRSGGVGGSNINHRPGKANQKNAASNLLKS 109
           GG +N TVA W+VLRA+ GGRS G GGS IN RP +A  KNAASNL  S
Sbjct: 61  GGEQNLTVAGWVVLRARGGGRSVGAGGSIINRRPRRATNKNAASNLFVS 94

[Close]
BLAST of Lag0031222.1 vs. NCBI nr
Match: KGN58897.2 (hypothetical protein Csa_001334 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 6.6e-10
Identity = 65/134 (48.51%), Postives = 79/134 (58.96%), Query Frame = 0 

Query: 1   MGVYACLLISILLLLFQTVWISAIPNNASSLEYGVSNHSINSLSVQHNHQVLVSPRGTGG 60
           MGVYACLLIS+LL+L QTVWIS++ +NAS+  +   + S   L   H HQ    PR  GG
Sbjct: 1   MGVYACLLISLLLIL-QTVWISSL-SNASNNSFPYESLSNPPLQTHHLHQ---QPRLGGG 60

Query: 61  GGGENRTVA--DWIVLRAKGGRSGGVGGSNI-NHRPGKANQKNAASNLLKSTYFAANSAG 120
           G  EN   A   W V +AKGG   G GG+   NHRPGKA  KNAAS L+ S     N+  
Sbjct: 61  GKEENNKTAAESWTVSKAKGGGRSGAGGAGANNHRPGKA--KNAASTLMNSN----NNII 120

Query: 121 LILFLLVLIFLMSF 132
           +I  LL+  FL  F
Sbjct: 121 IITTLLLSSFLYLF 123

The following BLAST results are available for this feature:
BLAST of Lag0031222.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6581619.12.5e-1753.97hypothetical protein SDJN03_21621, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6606846.11.4e-1254.13hypothetical protein SDJN03_00188, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN58897.26.6e-1048.51hypothetical protein Csa_001334 [Cucumis sativus][more]
BLAST of Lag0031222.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0031222Lag0031222gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0031222.1.exon1Lag0031222.1.exon1exon
Lag0031222.1.exon2Lag0031222.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0031222.1cds.Lag0031222.1CDS
cds.Lag0031222.1cds.Lag0031222.1_2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0031222.1Lag0031222.1-proteinpolypeptide