Lag0029836.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0029836.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr8: 42511654 .. 42512001 (-)
Sequence length348
RNA-Seq ExpressionLag0029836.1
SyntenyLag0029836.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGCTTTTTTTCGATGCTGCTCTGATGCTGTATTGGGCCGAGCAGCAACTCAATCTGATTCTCCAAAAACAGGCTCGACTTTATCCAAAAATCCACGCCACCAGATTAGAAGAAGCTGACACGGTAGATTATTCGTCATCAATGGAGGCTGGAGATCAGTACTCCAAGTCCAACCATGGACGACGACTCTGGCTCGAGGAGGATTTCTTGCTCTTAAACTCAAATCCAGCACTCACACGGGGTGGGAAGAGGAAACTCTTTATCTACACAATTTCATGTGTTTTGGTTTTGGTTGCTGTAACTGTATTGGATTTATACTCCTCAAAGTTCGTCTTGTTCAGTTGA

mRNA sequence

ATGCTGCTTTTTTTCGATGCTGCTCTGATGCTGTATTGGGCCGAGCAGCAACTCAATCTGATTCTCCAAAAACAGGCTCGACTTTATCCAAAAATCCACGCCACCAGATTAGAAGAAGCTGACACGGTAGATTATTCGTCATCAATGGAGGCTGGAGATCAGTACTCCAAGTCCAACCATGGACGACGACTCTGGCTCGAGGAGGATTTCTTGCTCTTAAACTCAAATCCAGCACTCACACGGGGTGGGAAGAGGAAACTCTTTATCTACACAATTTCATGTGTTTTGGTTTTGGTTGCTGTAACTGTATTGGATTTATACTCCTCAAAGTTCGTCTTGTTCAGTTGA

Coding sequence (CDS)

ATGCTGCTTTTTTTCGATGCTGCTCTGATGCTGTATTGGGCCGAGCAGCAACTCAATCTGATTCTCCAAAAACAGGCTCGACTTTATCCAAAAATCCACGCCACCAGATTAGAAGAAGCTGACACGGTAGATTATTCGTCATCAATGGAGGCTGGAGATCAGTACTCCAAGTCCAACCATGGACGACGACTCTGGCTCGAGGAGGATTTCTTGCTCTTAAACTCAAATCCAGCACTCACACGGGGTGGGAAGAGGAAACTCTTTATCTACACAATTTCATGTGTTTTGGTTTTGGTTGCTGTAACTGTATTGGATTTATACTCCTCAAAGTTCGTCTTGTTCAGTTGA

Protein sequence

MLLFFDAALMLYWAEQQLNLILQKQARLYPKIHATRLEEADTVDYSSSMEAGDQYSKSNHGRRLWLEEDFLLLNSNPALTRGGKRKLFIYTISCVLVLVAVTVLDLYSSKFVLFS
Homology
BLAST of Lag0029836.1 vs. NCBI nr
Match: KAG6579352.1 (hypothetical protein SDJN03_23800, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.5 bits (184), Expect = 3.4e-10
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 0

Query: 1   MLLFFDAALMLYWAEQQLNLILQKQARLYPKIHATRLEEADTVDYSSSMEAGDQYSKSNH 60
           +LLFFDAALMLY  E QL+LILQK A+L   + A + E+ADT   +S MEAGDQ   ++H
Sbjct: 82  VLLFFDAALMLYRHENQLHLILQKHAQLCRHLLAIKEEQADT--KASLMEAGDQ---ASH 141

Query: 61  GRRLWLEEDFLLLNSNPAL--TRGGKRKLFIYTISCVLVLVAVTVLDLYSSKFVL 114
           G  L LEE+ +L+NS       R  +RK+ +YTI C    + V  L+LY+ K VL
Sbjct: 142 G--LSLEEELMLINSTSPFRRRRPWERKVHVYTIFC--AFIGVASLELYACKAVL 187

BLAST of Lag0029836.1 vs. NCBI nr
Match: KAG6579345.1 (hypothetical protein SDJN03_23793, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-09
Identity = 54/115 (46.96%), Postives = 74/115 (64.35%), Query Frame = 0

Query: 1   MLLFFDAALMLYWAEQQLNLILQKQARLYPKIHATRLEEADTVDYSSSMEAGDQYSKSNH 60
           +LLFFD ALMLY  E QL+LILQK A+L   + A + E+AD    +S MEAGD+   ++H
Sbjct: 86  VLLFFDTALMLYRHENQLHLILQKHAQLCRHLLAIKEEQADI--KASLMEAGDE---ASH 145

Query: 61  GRRLWLEEDFLLLNSNPAL--TRGGKRKLFIYTISCVLVLVAVTVLDLYSSKFVL 114
           G  L LEE+ +L+NS       R  +RK+++YTI C   L+ V  L+LY+ K VL
Sbjct: 146 G--LSLEEELMLINSTSPFRRRRPWERKVYVYTIFC--ALIGVASLELYACKAVL 191

BLAST of Lag0029836.1 vs. NCBI nr
Match: KAG6579344.1 (hypothetical protein SDJN03_23792, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.2 bits (165), Expect = 5.4e-08
Identity = 54/116 (46.55%), Postives = 70/116 (60.34%), Query Frame = 0

Query: 1   MLLFFDAALMLYWAEQQLNLILQKQARLYPKIHATRLEEADTVDYSSSMEAGDQYSKSNH 60
           MLLF DAALMLY  + QLNLILQ   +LY ++ A +          S MEAGD+   ++H
Sbjct: 88  MLLFVDAALMLYPHQNQLNLILQTHHQLYRQLLAIK---------DSLMEAGDE---ASH 147

Query: 61  GRRLWLEEDFLLLNSNPAL-TRGGKRKLFIYTISCVLVLVAVTVLDLYSSKFVLFS 116
           G  L LEE+ +L+NSN A   R   RK ++YTI C L+ VA   L+LY+   VL S
Sbjct: 148 G--LSLEEELMLINSNAAYRRRPWGRKFYVYTIFCALIDVA--SLELYACNSVLCS 187

BLAST of Lag0029836.1 vs. NCBI nr
Match: KAE8650729.1 (hypothetical protein Csa_023412 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 5.6e-05
Identity = 49/116 (42.24%), Postives = 68/116 (58.62%), Query Frame = 0

Query: 1   MLLFFDAALMLYWAEQQLNLILQKQARLYPKIHATRLEEADTVDYSSSMEAGDQYSKSNH 60
           +LL+ DAALMLY +E + NLIL K A+LY +I   + +E +++D SSSMEA         
Sbjct: 87  ILLYLDAALMLYRSELKQNLILNKHAQLYHQISKIK-QEFNSID-SSSMEA--------- 146

Query: 61  GRRLWLEED-FLLLNSNPALTRGGKRKLFIYTISCVLVLVAVTVLDLYSSKFVLFS 116
                 EED  LL+NS+    R  +R  ++ TI C LV VA   L+LY+ K +L S
Sbjct: 147 ------EEDLILLINSSSTFRRSEERIFYMSTIFCALVCVA--SLELYACKSILCS 183

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6579352.13.4e-1048.70hypothetical protein SDJN03_23800, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6579345.11.3e-0946.96hypothetical protein SDJN03_23793, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6579344.15.4e-0846.55hypothetical protein SDJN03_23792, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8650729.15.6e-0542.24hypothetical protein Csa_023412 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0029836Lag0029836gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0029836.1.exon1Lag0029836.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0029836.1cds.Lag0029836.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0029836.1Lag0029836.1-proteinpolypeptide