Lag0029533.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0029533.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionIleal sodium/bile acid cotransporter, putative
Locationchr8: 39853990 .. 39854478 (-)
Sequence length489
RNA-Seq ExpressionLag0029533.1
SyntenyLag0029533.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACCAAATTCACAGCAAATTTCCTTAGATATGAATGAACTCTATTCTTTCATCACTGCAATTAACGAAAGATATCCTGGAATCAGCAGTATTACCTGGGAAACATCCACAGCTTCGGATGGCCTTCCAATTTGCATCAGAATGCAGAGGCCTCCACCAGCCAACGGCCCTCAGTATAATCTTGGGAAGACGATTCTTGGCCTTACTTTTCAGGCAGTTTTGGCCTTGTTCATCAGCTCACCCAGTTCATATCCTCCACTTTTTACACATCTCTTTGGGTCTGCTGTATTGATTAGCTTTGCTGGTCTTTGCCTTCAAAATGCATTCCCGAGAGTCGCACTTTTTTTGGGAAAGATCGGTGCTCTTATTGCTGCAATTGGTGTGTGCATCATAGCAAGTCTTCTTCTAATCCATCAGAATTTCACTTGGATCACTTGGCTGGCATGTGTCTTCTCCTTGATAGCCTTTGTTCTATCATTCAAGTGA

mRNA sequence

ATGGAACCAAATTCACAGCAAATTTCCTTAGATATGAATGAACTCTATTCTTTCATCACTGCAATTAACGAAAGATATCCTGGAATCAGCAGTATTACCTGGGAAACATCCACAGCTTCGGATGGCCTTCCAATTTGCATCAGAATGCAGAGGCCTCCACCAGCCAACGGCCCTCAGTATAATCTTGGGAAGACGATTCTTGGCCTTACTTTTCAGGCAGTTTTGGCCTTGTTCATCAGCTCACCCAGTTCATATCCTCCACTTTTTACACATCTCTTTGGGTCTGCTGTATTGATTAGCTTTGCTGGTCTTTGCCTTCAAAATGCATTCCCGAGAGTCGCACTTTTTTTGGGAAAGATCGGTGCTCTTATTGCTGCAATTGGTGTGTGCATCATAGCAAGTCTTCTTCTAATCCATCAGAATTTCACTTGGATCACTTGGCTGGCATGTGTCTTCTCCTTGATAGCCTTTGTTCTATCATTCAAGTGA

Coding sequence (CDS)

ATGGAACCAAATTCACAGCAAATTTCCTTAGATATGAATGAACTCTATTCTTTCATCACTGCAATTAACGAAAGATATCCTGGAATCAGCAGTATTACCTGGGAAACATCCACAGCTTCGGATGGCCTTCCAATTTGCATCAGAATGCAGAGGCCTCCACCAGCCAACGGCCCTCAGTATAATCTTGGGAAGACGATTCTTGGCCTTACTTTTCAGGCAGTTTTGGCCTTGTTCATCAGCTCACCCAGTTCATATCCTCCACTTTTTACACATCTCTTTGGGTCTGCTGTATTGATTAGCTTTGCTGGTCTTTGCCTTCAAAATGCATTCCCGAGAGTCGCACTTTTTTTGGGAAAGATCGGTGCTCTTATTGCTGCAATTGGTGTGTGCATCATAGCAAGTCTTCTTCTAATCCATCAGAATTTCACTTGGATCACTTGGCTGGCATGTGTCTTCTCCTTGATAGCCTTTGTTCTATCATTCAAGTGA

Protein sequence

MEPNSQQISLDMNELYSFITAINERYPGISSITWETSTASDGLPICIRMQRPPPANGPQYNLGKTILGLTFQAVLALFISSPSSYPPLFTHLFGSAVLISFAGLCLQNAFPRVALFLGKIGALIAAIGVCIIASLLLIHQNFTWITWLACVFSLIAFVLSFK
Homology
BLAST of Lag0029533.1 vs. NCBI nr
Match: KGN49803.1 (hypothetical protein Csa_004681 [Cucumis sativus])

HSP 1 Score: 189.5 bits (480), Expect = 2.3e-44
Identity = 110/168 (65.48%), Postives = 127/168 (75.60%), Query Frame = 0

Query: 1   MEPNSQQISLDMNELYSFITAINERYPGISSITWETSTASDGLPICIRMQRPPPANG--P 60
           ME +SQQIS+DMN LYS IT+INER P I           +GLPICI MQ   PAN    
Sbjct: 1   MESSSQQISIDMNHLYSLITSINERNPEI-----------NGLPICIIMQTASPANSSKT 60

Query: 61  QYNLGKTILGLTFQAVLALFISSPSSYPPLFTHLFGSAVLISFA----GLCLQNAFPRVA 120
           + N+G TILGLTFQAVLALFI+S +S PPL THLFG+AVLISFA    G+ LQ+ FPR+A
Sbjct: 61  ENNVGTTILGLTFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIA 120

Query: 121 LFLGKIGALIAAIGVCIIASLLLIHQNFTWITWLACVFSLIAFVLSFK 163
           L   KIGALIAAIGVCI+AS LLIHQNF WI+WLAC FSL+AF+LSF+
Sbjct: 121 LLFEKIGALIAAIGVCILAS-LLIHQNFAWISWLACGFSLMAFLLSFR 156

BLAST of Lag0029533.1 vs. NCBI nr
Match: KAA0050246.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98160.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])

HSP 1 Score: 188.0 bits (476), Expect = 6.6e-44
Identity = 109/157 (69.43%), Postives = 121/157 (77.07%), Query Frame = 0

Query: 12  MNELYSFITAINERYPGISSITWETSTASDGLPICIRMQRPPPANG--PQYNLGKTILGL 71
           MNELYSFITAINER P I+S           LPICI MQRP PAN    + N+GKTILGL
Sbjct: 1   MNELYSFITAINERNPEINS-----------LPICITMQRPSPANSSKTENNVGKTILGL 60

Query: 72  TFQAVLALFISSPSSYPPLFTHLFGSAVLI----SFAGLCLQNAFPRVALFLGKIGALIA 131
           TFQAVLALFI+SP+S PPL THLF +AVLI    SFAG+ LQN FPR+AL   KIGALIA
Sbjct: 61  TFQAVLALFITSPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIA 120

Query: 132 AIGVCIIASLLLIHQNFTWITWLACVFSLIAFVLSFK 163
           AIGVCI+AS LLIHQNF WI+WLA  FSL+AFVLSF+
Sbjct: 121 AIGVCIVAS-LLIHQNFAWISWLASGFSLMAFVLSFR 145

BLAST of Lag0029533.1 vs. NCBI nr
Match: KAA0050244.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98162.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-34
Identity = 92/165 (55.76%), Postives = 110/165 (66.67%), Query Frame = 0

Query: 2   EPNSQQISLDMNELYSFITAINERYPGISSITWETSTASDGLPICIRMQRPPPANGPQYN 61
           E    +ISLDMNELYSFITA+  R PGISS TW T+ ASD LPI I+MQRP P N PQ+ 
Sbjct: 3   ETKPHEISLDMNELYSFITAVTNRNPGISSCTWGTA-ASDCLPIYIKMQRPSPVNSPQF- 62

Query: 62  LGKTILGLTFQAVLALFISSPSSYPPLFTHLFGSAVL----ISFAGLCLQNAFPRVALFL 121
            G T +   FQA+L LF++ P S PPL + L G+ +L     SF G+ LQ  FP++A  L
Sbjct: 63  -GNTFVSSNFQAILGLFLNLPPSPPPL-SELIGTVMLTAFVFSFCGVLLQKPFPKIAHLL 122

Query: 122 GKIGALIAAIGVCIIASLLLIHQNFTWITWLACVFSLIAFVLSFK 163
              GAL+AAIGVCI+ S LL H N TWI WLAC   L AF+ SFK
Sbjct: 123 QMFGALLAAIGVCIMGSPLL-HPNLTWIRWLACGLILPAFITSFK 162

BLAST of Lag0029533.1 vs. NCBI nr
Match: KGN49808.1 (hypothetical protein Csa_004650 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 5.8e-32
Identity = 90/168 (53.57%), Postives = 106/168 (63.10%), Query Frame = 0

Query: 1   MEPNSQQISLDMNELYSFITAINERYPGISSITWETSTASDGLPICIRMQRPPPANG-PQ 60
           M   S Q SLDM+   SFI  I++R  G+        T S+ LP+ IRMQ+ P A     
Sbjct: 1   MASTSHQTSLDMSAFSSFIRTISQRNYGLGC----CCTPSNCLPVFIRMQQSPQATADSS 60

Query: 61  YNLGKTILGLTFQAVLALFISS-PSSYPPLFTHLFGSAVLI----SFAGLCLQNAFPRVA 120
             LGK IL L+FQAVLALFISS P+S PPL  H F +AV I    SFA L L N+FPR A
Sbjct: 61  QKLGKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTA 120

Query: 121 LFLGKIGALIAAIGVCIIASLLLIHQNFTWITWLACVFSLIAFVLSFK 163
               K+GAL +A GVC IAS LL+HQNF WI W+AC FS+I F LSFK
Sbjct: 121 HLFEKVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

BLAST of Lag0029533.1 vs. NCBI nr
Match: KAG6579137.1 (hypothetical protein SDJN03_23585, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.4 bits (368), Expect = 2.2e-31
Identity = 81/131 (61.83%), Postives = 98/131 (74.81%), Query Frame = 0

Query: 39  ASDGLPICIRMQRPPP---ANGPQYNLGKTILGLTFQAVLALFISSPSSYPPLFTHLFGS 98
           ASDGLP    M RPPP   ++  + NLGK + GLTFQAVLALFIS P+S PPL  H+F +
Sbjct: 21  ASDGLPPTTAMPRPPPPPDSSQTRNNLGKIVFGLTFQAVLALFISPPTSCPPLLMHIFAA 80

Query: 99  AVLISF----AGLCLQNAFPRVALFLGKIGALIAAIGVCIIASLLLIHQNFTWITWLACV 158
           A+LISF    A L LQ A+PR+AL  GKIGAL+AAIG C I S+LL HQ+F+WI WLAC 
Sbjct: 81  AMLISFALSLAALFLQIAYPRIALSSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACG 140

Query: 159 FSLIAFVLSFK 163
           F+L+AF+LSFK
Sbjct: 141 FALMAFILSFK 151

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN49803.12.3e-4465.48hypothetical protein Csa_004681 [Cucumis sativus][more]
KAA0050246.16.6e-4469.43putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981... [more]
KAA0050244.11.2e-3455.76putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981... [more]
KGN49808.15.8e-3253.57hypothetical protein Csa_004650 [Cucumis sativus][more]
KAG6579137.12.2e-3161.83hypothetical protein SDJN03_23585, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0029533Lag0029533gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0029533.1.exon1Lag0029533.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0029533.1cds.Lag0029533.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0029533.1Lag0029533.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane