Lag0029385.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0029385.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr8: 38433629 .. 38434934 (-)
Sequence length210
RNA-Seq ExpressionLag0029385.1
SyntenyLag0029385.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTCTCAAAATTTCCTTTGCGTTAAAGCTGCTTTTCTTCGCAGTGCTTCTCGTCGTCTCTTCTGTTTCTGCGACTGATAACAATCCTTCGCTTCACAAACCTCACATTCGTAAGTTCTCTCTATACTCTTACGTTCAAAGTAGACAATATTATATCATTGTAGAGAGATGTGTAGAACTGTTCATTGTCCTTTACATGATTTCAACATAAGTTTTTCACACATTAAAAAATAGGGTATTTATATATACTTTAAAATATCTTAGGATGTTTTCGTCGTAGTTGTTTTTTTCGTCACTCGCAAGGTTAAACTTTTAAGAAAGATGATAAGTGTCCTATATCGTTCTTCTTATCCACTAAACTATGATTTTTGGAAGCTAATAAGTACATAACTATGTTTTGGATCGTCCTTTTAACGGTAAAACTTTTAATTTATGTTTAGCATAAGCAATTTAAGGTACATTTCTAAACTCAATATATTAGACCAATATAGTATGTAGCTTGAATTAATTAAAAATGCAATATATAAATCAAAAAAGAAAAATCTTATAAGCCTTAGAGCTCATGTATCAAGAGTAAGCATAGTGAGAAATGTTGTTTGTTCCAAGTTGAGGTTAAAGAATATGTCCTATTTTGGGCTTTTGAATTCTTTTGAAAAAAAAAAAACTTAATAAAGAAGACAAAAGGAAGACCCCATTAAACTTGGGATCATGACTATGTATTTTTTTTTTTTAATTATTTGTGAACATCGTTTAGATAAATTTGCGTACACTTAGATTAATTTCACGGAACAATTATTAAATCCTACAAAATTTAATTTCTCTTTCTTAGGAGAAGTCTCATCAAACTTATTTTTCTTTAATATTCATGAATGTTTAGGTAAATTTACTTACACTTAGATTAATCTCACAGGACAATTATTTAATCCTACAATATTTGATTTCTTTTTTGAGAGAAGTTTCATTCAACTTCTTTTTCTTTAATATTATTCTTGAATTATATTGATTTTTTTTTTTTTTTGTGAAAAATGAATTATATTAACTTAGTAATTTAGACTAATTTCATGGACAATTGAATTTGAACATGCATGTACATACAACTTTCGTTAAGAAATATTCTATTTAAAATAAAAAGGGGAATATAATCAAAGTTTAATTTACTAAGAATTAATTTATTTATTTATTTTGATTTTTGGTATATGTTTAAAGGTAAGGCTGTTGTGAAGACTGCGTTGGGAGCAAAGCCAGCAGTTTATGATTTCCCATGGAAGGGTGGTTATGATCCTCCAGACAACAACCGTTGA

mRNA sequence

ATGGCTTCTCTCAAAATTTCCTTTGCGTTAAAGCTGCTTTTCTTCGCAGTGCTTCTCGTCGTCTCTTCTGTTTCTGCGACTGATAACAATCCTTCGCTTCACAAACCTCACATTCGTAAGGCTGTTGTGAAGACTGCGTTGGGAGCAAAGCCAGCAGTTTATGATTTCCCATGGAAGGGTGGTTATGATCCTCCAGACAACAACCGTTGA

Coding sequence (CDS)

ATGGCTTCTCTCAAAATTTCCTTTGCGTTAAAGCTGCTTTTCTTCGCAGTGCTTCTCGTCGTCTCTTCTGTTTCTGCGACTGATAACAATCCTTCGCTTCACAAACCTCACATTCGTAAGGCTGTTGTGAAGACTGCGTTGGGAGCAAAGCCAGCAGTTTATGATTTCCCATGGAAGGGTGGTTATGATCCTCCAGACAACAACCGTTGA

Protein sequence

MASLKISFALKLLFFAVLLVVSSVSATDNNPSLHKPHIRKAVVKTALGAKPAVYDFPWKGGYDPPDNNR
Homology
[Close]
BLAST of Lag0029385.1 vs. NCBI nr
Match: XP_022141390.1 (uncharacterized protein LOC111011803 [Momordica charantia])

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 46/75 (61.33%), Postives = 54/75 (72.00%), Query Frame = 0 

Query: 1   MASLKISFALKLLFFAVLLVVSSVSATDNNPSLHK-PHIRK------AVVKTALGAKPAV 60
           MASL+ISF LKL FFA+LL+ S VSA  + PS+HK P IRK      +V K  L AK A 
Sbjct: 42  MASLRISFVLKLFFFALLLIASRVSA--STPSIHKRPRIRKLGMEYRSVGKAVLRAKAAS 101

Query: 61  YDFPWKGGYDPPDNN 69
           YDFPWKGGY+PP+NN
Sbjct: 102 YDFPWKGGYNPPNNN 114

[Close]
BLAST of Lag0029385.1 vs. NCBI nr
Match: TYK18975.1 (hypothetical protein E5676_scaffold418G00680 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 5.3e-11
Identity = 44/77 (57.14%), Postives = 53/77 (68.83%), Query Frame = 0 

Query: 1  MASLKISFAL-KLLFFAVLLVVSSVSATDNNPSLHKPHIRK-------AVVKTALGAKPA 60
          MAS+ I + + KLLFF +LL+ +S   T   P LH+P  RK       +V K ALGAKPA
Sbjct: 1  MASINIIWIIFKLLFFTLLLITTS---TAFQPQLHEPRFRKKMRMEYRSVRKGALGAKPA 60

Query: 61 VYDFPWKGGYDPPDNNR 70
          VYDFPWKGGY+PPDNNR
Sbjct: 61 VYDFPWKGGYNPPDNNR 74

[Close]
BLAST of Lag0029385.1 vs. NCBI nr
Match: KAG6602002.1 (hypothetical protein SDJN03_07235, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 45/75 (60.00%), Postives = 49/75 (65.33%), Query Frame = 0 

Query: 1  MASLKISFALKLLFFAVLLVVSSVSATDNNPSLHKPHIRK------AVVKTALGAKPAVY 60
          M S KIS AL   F A+LLV  +VSA D + S  KPHIRK       V K AL AKPAVY
Sbjct: 1  MGSHKISMALP-FFLALLLVAFTVSAADISASFQKPHIRKLSMEYTTVEKAALRAKPAVY 60

Query: 61 DFPWKGGYDPPDNNR 70
          DFPWKGGY PP N+R
Sbjct: 61 DFPWKGGYHPPANDR 74

[Close]
BLAST of Lag0029385.1 vs. NCBI nr
Match: KGN53822.1 (hypothetical protein Csa_015192 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 7.7e-10
Identity = 42/78 (53.85%), Postives = 50/78 (64.10%), Query Frame = 0 

Query: 1  MASLK--ISFALKLLFFAVLLVVSSVSATDNNPSLHKPHIRK-------AVVKTALGAKP 60
          MAS+   I    KLLFF +LL+ +S +     P LH+PH RK       +V K ALG KP
Sbjct: 1  MASINNIILIIFKLLFFTLLLITTSSAF---QPQLHEPHFRKKMRMEYRSVRKAALGGKP 60

Query: 61 AVYDFPWKGGYDPPDNNR 70
          AVYDFPWKGGY+PP NNR
Sbjct: 61 AVYDFPWKGGYNPPHNNR 75

[Close]
BLAST of Lag0029385.1 vs. NCBI nr
Match: KAE8650427.1 (hypothetical protein Csa_010020 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 2.6e-05
Identity = 37/70 (52.86%), Postives = 43/70 (61.43%), Query Frame = 0 

Query: 4  LKISFALKLLFFAVLLVV--SSVSATDNNPSLHKPHIRKAVVKTALGAK----PAVY--- 63
          +KIS  LKLLFFA LL +  +++SAT+N P LHKP IRK  V    G K    P VY   
Sbjct: 10 MKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPKVYKPT 69

The following BLAST results are available for this feature:
BLAST of Lag0029385.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022141390.11.4e-1161.33uncharacterized protein LOC111011803 [Momordica charantia][more]
TYK18975.15.3e-1157.14hypothetical protein E5676_scaffold418G00680 [Cucumis melo var. makuwa][more]
KAG6602002.11.2e-1060.00hypothetical protein SDJN03_07235, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN53822.17.7e-1053.85hypothetical protein Csa_015192 [Cucumis sativus][more]
KAE8650427.12.6e-0552.86hypothetical protein Csa_010020 [Cucumis sativus][more]
BLAST of Lag0029385.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0029385Lag0029385gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0029385.1.exon2Lag0029385.1.exon2exon
Lag0029385.1.exon1Lag0029385.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0029385.1cds.Lag0029385.1_2CDS
cds.Lag0029385.1cds.Lag0029385.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0029385.1Lag0029385.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane