Lag0029099.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0029099.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr8: 35369585 .. 35369899 (-)
Sequence length	315
RNA-Seq Expression	Lag0029099.1
Synteny	Lag0029099.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCTTCAATGCGGCCCTCTCTCGTTTTCGCCATTTTTGCAGCATTATTCCTCTCTTTGAGCTTCCCCTCCGCCGCCCACTCTTCTCCGGTCAAACAGCTTCATTCCTCACTGCCTTCTCTTTCTCACAGGAAAATTCTTCCGCCACCGCCACCGTCTGCACCGGTTTCCCGAAACCCATACCCGTCTTCTCTACCTCTGCCATGTGAAAGCGAAACAGCCTCACCGCCCTTAACTTCGCCGTCGCCGCCGCCGCCTATGTTTCAATGGCCACCCGATTTCGTCAAAAAAACCCCGTCGCCCCCTTTCTAG

mRNA sequence

ATGGAGTCTTCAATGCGGCCCTCTCTCGTTTTCGCCATTTTTGCAGCATTATTCCTCTCTTTGAGCTTCCCCTCCGCCGCCCACTCTTCTCCGGTCAAACAGCTTCATTCCTCACTGCCTTCTCTTTCTCACAGGAAAATTCTTCCGCCACCGCCACCGTCTGCACCGGTTTCCCGAAACCCATACCCGTCTTCTCTACCTCTGCCATGTGAAAGCGAAACAGCCTCACCGCCCTTAACTTCGCCGTCGCCGCCGCCGCCTATGTTTCAATGGCCACCCGATTTCGTCAAAAAAACCCCGTCGCCCCCTTTCTAG

Coding sequence (CDS)

ATGGAGTCTTCAATGCGGCCCTCTCTCGTTTTCGCCATTTTTGCAGCATTATTCCTCTCTTTGAGCTTCCCCTCCGCCGCCCACTCTTCTCCGGTCAAACAGCTTCATTCCTCACTGCCTTCTCTTTCTCACAGGAAAATTCTTCCGCCACCGCCACCGTCTGCACCGGTTTCCCGAAACCCATACCCGTCTTCTCTACCTCTGCCATGTGAAAGCGAAACAGCCTCACCGCCCTTAACTTCGCCGTCGCCGCCGCCGCCTATGTTTCAATGGCCACCCGATTTCGTCAAAAAAACCCCGTCGCCCCCTTTCTAG

Protein sequence

MESSMRPSLVFAIFAALFLSLSFPSAAHSSPVKQLHSSLPSLSHRKILPPPPPSAPVSRNPYPSSLPLPCESETASPPLTSPSPPPPMFQWPPDFVKKTPSPPF

Homology

[Close]

BLAST of Lag0029099.1 vs. NCBI nr
Match: KAG6578900.1 (hypothetical protein SDJN03_23348, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.4 bits (137), Expect = 8.6e-05
Identity = 40/91 (43.96%), Postives = 45/91 (49.45%), Query Frame = 0


Query: 14  FAALFLSLSFPSAAHSSPVKQLHSSLPSLSHRKILPPPPPSAPVSRNPYPSSLPLPCESE 73
           +A L LSL FPSA           +  S  HRK LPPPPP                    
Sbjct: 70  YAVLILSLGFPSAV---------DARSSRHHRKTLPPPPP-------------------- 128

Query: 74  TASPPLTSPSPPPPMFQWPPDFVKKTPSPPF 105
              PP  +PSPPPP FQWPPDFV+K+P PPF
Sbjct: 130 ---PPPPNPSPPPPKFQWPPDFVRKSPPPPF 128

[Close]

BLAST of Lag0029099.1 vs. NCBI nr
Match: KGN46160.1 (hypothetical protein Csa_005439 [Cucumis sativus])

HSP 1 Score: 55.1 bits (131), Expect = 4.3e-04
Identity = 49/107 (45.79%), Postives = 54/107 (50.47%), Query Frame = 0


Query: 1   MESSMRPSLVFAIFAA-LFLSLSFPSA--AHSSPVKQLHSSLPSLSHRKILPPPPPSAPV 60
           M+SSM  SL+FAI    L LS SF S   AHSSP K  H       HRK LPPPP    V
Sbjct: 1   MKSSM-SSLLFAILVTLLLLSSSFLSLVDAHSSPFKNRHR---HRHHRKYLPPPPLCGTV 60

Query: 61  SRNPYPSSLPLPCESETASPPLTSPSPPPPMFQWPPDFVKKTPSPPF 105
           +R                      P PPPP FQWPP+ VKK+P PPF
Sbjct: 61  AR---------------------PPPPPPPKFQWPPNHVKKSPPPPF 82

The following BLAST results are available for this feature:

BLAST of Lag0029099.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578900.1	8.6e-05	43.96	hypothetical protein SDJN03_23348, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN46160.1	4.3e-04	45.79	hypothetical protein Csa_005439 [Cucumis sativus]	[more]

BLAST of Lag0029099.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..104

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0029099	Lag0029099	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0029099.1.exon1	Lag0029099.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0029099.1	cds.Lag0029099.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0029099.1	Lag0029099.1-protein	polypeptide