Lag0028772.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0028772.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr8: 30483311 .. 30483742 (+)
Sequence length	315
RNA-Seq Expression	Lag0028772.1
Synteny	Lag0028772.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCGCAATCGATCGGAGACGTTGAAGTTTATAAAGGACCGTATTTGGAGGCAGATCCAGAGATGGAAGGGTAAATTCTTCTCGATAGCGGGGAAGGAAGTTCTCCTTAAGTCTATAGTTCAGGCTATTCCTTGCTATATGATGAACTATTTTTGTTTGCCTAGGTGTTTGATCAGAGAAGTTCACAGGACCATGGCTAAATTCTGGTGGAATGGGTCTAAAGAAGCAAGGTGAATACATTGGGTGAGTTGGGATTTGTTGTGCCAACCCAAGTGCATGGGTGGGTTGGCAACATGGAACTGTTCAACCAAGCCTTGTTGGCTAAACAGTGTTGGCATGTCCTCCAGGATCCTTCCTCTCTTTTGTGCTATGTTCTCAAGGGTCGTATTTTCCCCAGTCAAGATTCTTGAAAGCAGAACTTGTGTATAA

mRNA sequence

ATGCCTCGCAATCGATCGGAGACGTTGAAGTTTATAAAGGACCGTATTTGGAGGCAGATCCAGAGATGGAAGGGTAAATTCTTCTCGATAGCGGGGAAGGAAGTTCTCCTTAAGTCTATAGTTCAGGCTATTCCTTGCTATATGATGAACTATTTTTGTTTGCCTAGGTGTTTGATCAGAGAAGTTCACAGGACCATGGCTAAATTCTGGTGGAATGGGTCTAAAGAAGCAAGGATCCTTCCTCTCTTTTGTGCTATGTTCTCAAGGGTCGTATTTTCCCCAGTCAAGATTCTTGAAAGCAGAACTTGTGTATAA

Coding sequence (CDS)

ATGCCTCGCAATCGATCGGAGACGTTGAAGTTTATAAAGGACCGTATTTGGAGGCAGATCCAGAGATGGAAGGGTAAATTCTTCTCGATAGCGGGGAAGGAAGTTCTCCTTAAGTCTATAGTTCAGGCTATTCCTTGCTATATGATGAACTATTTTTGTTTGCCTAGGTGTTTGATCAGAGAAGTTCACAGGACCATGGCTAAATTCTGGTGGAATGGGTCTAAAGAAGCAAGGATCCTTCCTCTCTTTTGTGCTATGTTCTCAAGGGTCGTATTTTCCCCAGTCAAGATTCTTGAAAGCAGAACTTGTGTATAA

Protein sequence

MPRNRSETLKFIKDRIWRQIQRWKGKFFSIAGKEVLLKSIVQAIPCYMMNYFCLPRCLIREVHRTMAKFWWNGSKEARILPLFCAMFSRVVFSPVKILESRTCV

Homology

[Close]

BLAST of Lag0028772.1 vs. NCBI nr
Match: XP_022150918.1 (uncharacterized protein LOC111018954 [Momordica charantia])

HSP 1 Score: 105.5 bits (262), Expect = 2.8e-19
Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 1   MPRNRSETLKFIKDRIWRQIQRWKGKFFSIAGKEVLLKSIVQAIPCYMMNYFCLPRCLIR 60
           MPRNR     +IKDR+W+ +Q WK K FSI GKEVL+K++ QAIPCY M+ F LP+ LIR
Sbjct: 550 MPRNRRMHFNYIKDRVWKHLQGWKAKLFSIGGKEVLIKAVAQAIPCYTMSCFRLPKRLIR 609

Query: 61  EVHRTMAKFWWNGSKE 77
           E H   A+FWW  SKE
Sbjct: 610 EFHHITARFWWGSSKE 625

[Close]

BLAST of Lag0028772.1 vs. NCBI nr
Match: XP_021761446.1 (uncharacterized protein LOC110726302 [Chenopodium quinoa])

HSP 1 Score: 94.7 bits (234), Expect = 4.9e-16
Identity = 40/76 (52.63%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 3   RNRSETLKFIKDRIWRQIQRWKGKFFSIAGKEVLLKSIVQAIPCYMMNYFCLPRCLIREV 62
           R++     F+KDRIW+++Q WK KF S AGKEVLLKSI+QAIP Y+M  +  P  LI+E+
Sbjct: 631 RSKKAIFAFVKDRIWKKVQGWKEKFLSRAGKEVLLKSIIQAIPTYLMGVYRFPEGLIQEI 690

Query: 63  HRTMAKFWWNGSKEAR 79
           H  MA+FWW  + + R
Sbjct: 691 HAMMARFWWGSNDKGR 706

[Close]

BLAST of Lag0028772.1 vs. NCBI nr
Match: KAG7941873.1 (hypothetical protein I3843_16G069700 [Carya illinoinensis])

HSP 1 Score: 94.0 bits (232), Expect = 8.3e-16
Identity = 38/76 (50.00%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 3   RNRSETLKFIKDRIWRQIQRWKGKFFSIAGKEVLLKSIVQAIPCYMMNYFCLPRCLIREV 62
           R++ ET K IK+R+W+++  WK  F S AG+EVL+K+++Q+IP Y MN F  PR L +E+
Sbjct: 190 RSKYETFKGIKERVWKKVSSWKNSFLSSAGREVLIKAVLQSIPTYTMNVFRFPRKLSQEL 249

Query: 63  HRTMAKFWWNGSKEAR 79
           +  +A+FWWNG+KE R
Sbjct: 250 NSMLARFWWNGNKEGR 265

[Close]

BLAST of Lag0028772.1 vs. NCBI nr
Match: XP_010688579.1 (PREDICTED: uncharacterized protein LOC104902491 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 92.0 bits (227), Expect = 3.2e-15
Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 3   RNRSETLKFIKDRIWRQIQRWKGKFFSIAGKEVLLKSIVQAIPCYMMNYFCLPRCLIREV 62
           R++  T   IK+RIW+++Q WK K  S  GKEVL+K++VQAIP YMM+ FCLP  LI E+
Sbjct: 725 RSKKVTFACIKERIWKKLQGWKEKLLSRPGKEVLIKAVVQAIPTYMMSVFCLPSGLIDEI 784

Query: 63  HRTMAKFWWNGSKE 77
           H  +A+FWW GSKE
Sbjct: 785 HSLIARFWW-GSKE 797

[Close]

BLAST of Lag0028772.1 vs. NCBI nr
Match: XP_042964743.1 (uncharacterized protein LOC122298967 [Carya illinoinensis])

HSP 1 Score: 91.7 bits (226), Expect = 4.1e-15
Identity = 36/76 (47.37%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 3   RNRSETLKFIKDRIWRQIQRWKGKFFSIAGKEVLLKSIVQAIPCYMMNYFCLPRCLIREV 62
           R++ ET + IK+R+WR+I+ WK  F S AG+EVL+K+++Q+IP Y MN F  PR L +++
Sbjct: 247 RSKYETFRSIKERVWRKIRSWKNSFLSSAGREVLIKAVLQSIPTYTMNVFRFPRKLCKDI 306

Query: 63  HRTMAKFWWNGSKEAR 79
           +  +A FWW+G+K++R
Sbjct: 307 NSMIANFWWSGNKDSR 322

The following BLAST results are available for this feature:

BLAST of Lag0028772.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150918.1	2.8e-19	59.21	uncharacterized protein LOC111018954 [Momordica charantia]	[more]
XP_021761446.1	4.9e-16	52.63	uncharacterized protein LOC110726302 [Chenopodium quinoa]	[more]
KAG7941873.1	8.3e-16	50.00	hypothetical protein I3843_16G069700 [Carya illinoinensis]	[more]
XP_010688579.1	3.2e-15	56.76	PREDICTED: uncharacterized protein LOC104902491 [Beta vulgaris subsp. vulgaris]	[more]
XP_042964743.1	4.1e-15	47.37	uncharacterized protein LOC122298967 [Carya illinoinensis]	[more]

BLAST of Lag0028772.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 3..77
None	No IPR available	PANTHER	PTHR33116:SF45	SUBFAMILY NOT NAMED	coord: 3..77

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0028772	Lag0028772	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0028772.1.exon1	Lag0028772.1.exon1	exon
Lag0028772.1.exon2	Lag0028772.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0028772.1	cds.Lag0028772.1	CDS
cds.Lag0028772.1	cds.Lag0028772.1_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0028772.1	Lag0028772.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid