Homology
BLAST of Lag0027536.1 vs. NCBI nr
Match:
KYP50444.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])
HSP 1 Score: 618.6 bits (1594), Expect = 7.0e-173
Identity = 344/761 (45.20%), Postives = 467/761 (61.37%), Query Frame = 0
Query: 1 MTPEIATQVMGFDNAKDLWSAIQSLFGIQSRAEEDFLRQTFQQSRKGTSKMTDYLRLMKS 60
MT E+ATQ++ + ++ +W QSL G +R+ FL+ F ++RKG KM +YL MK
Sbjct: 1 MTQEVATQLLHCETSQQIWEDAQSLAGAHTRSRITFLKTEFHRTRKGGLKMEEYLTKMKE 60
Query: 61 HADNLGQAGSPVSTRNLVSQVLLGLDEEYNPIVAMIHGRGDISWSEMQAELLVFEKRLEL 120
AD+L AGS VST +LV+Q L GLD EYNPIV + + ++W EMQA+LL +E RLE
Sbjct: 61 IADDLALAGSSVSTMDLVTQTLAGLDNEYNPIVVQLSDKEHLTWVEMQAQLLTYENRLEQ 120
Query: 121 QNTQKAVVSFNHTPTVNVANNKNNMNQNNNRGWNYSHSNGQRGQFYNNNQRGGSNFNNGR 180
N Q + T+N ++N + + N RG + + G+ GQ N
Sbjct: 121 INNQSNL-------TLNPSSNISTI-LYNRRGKSNAFGGGRGGQI------------NRG 180
Query: 181 GRGGRGRGYGGYGNSNNRQVCQVCGRPGHSALMCYHRFDKEFSPNVNRGGNQNPNNSGNS 240
RGGRGRG + +R VCQVC +PGH+A CYHRF+K + + + ++ +
Sbjct: 181 ARGGRGRGRA----TKDRIVCQVCCKPGHAASHCYHRFNKNY---IGQNSDEQKSEKDKE 240
Query: 241 GNTQPPSAFVANSNSQYACPETVIDSNWYADSGASNHVTGDFNNLANTKEYGGNEQVVIG 300
N N N+ A P TV D +WY DSGASNHVT D N + E G + +G
Sbjct: 241 QN--------YNFNAYVASPSTVEDLDWYFDSGASNHVTYDQNKVQEVNENDGKSFLTVG 300
Query: 301 NGESLPITFTGDTYLSNGAAILSLNNVLCVPEITKNLVSVSKLAQDNDVFIEFHGDCCII 360
NG +L I GD+ L L+L ++L VP+ITKNL+S+SKL DND+++EFH C +
Sbjct: 301 NGANLKIIACGDSSLDTQQKSLNLKDILYVPKITKNLLSISKLTFDNDIYVEFHDVACFV 360
Query: 361 KDKRSGQEVLKGVLRDGLYQLNNVTRVPGVNEGCSESISKNSTANNHSSVFVVSRYPLSV 420
KDK +G+ +L+G ++DGLYQL PG +++ N VF
Sbjct: 361 KDKLTGRILLEGKIKDGLYQL------PG----------GSTSTNKRPHVF--------- 420
Query: 421 NIIVSKNVWHKRLGHPASRVLDFVINDCKLQVKENEMLSFCESCQFGKSHNLPFPLSSSR 480
K WH++LGHP S+VL+ V+ C ++ E FCE+CQFGK+HNLPF S S
Sbjct: 421 --FSIKETWHRKLGHPNSKVLNEVMKLCNIEASPCENFEFCEACQFGKAHNLPFQNSVSC 480
Query: 481 AKYPFELIHSDLWGPAPVLSTDGFQYYVLFLDDYSRYLWLYPLKKKNDALAAFHHFISMV 540
AK P +L+HSD+WGPAP+ S GF+YYVLFLDD+SR+ W+YPLK+K+D AF F ++V
Sbjct: 481 AKEPLDLVHSDVWGPAPISSVSGFKYYVLFLDDWSRFTWIYPLKQKSDVFQAFIQFRNLV 540
Query: 541 RNQFGCQIKILQSDNGGEYARIHQECYRLGIISRYSCPYTFAQNGRAERKHRHVVETGLT 600
NQF +IK LQ D GGE+ + + + GI R SCPYT AQNGRAERKHRHVVE+GLT
Sbjct: 541 ENQFNKRIKTLQCDGGGEFKSLSKVLIKTGIQLRESCPYTSAQNGRAERKHRHVVESGLT 600
Query: 601 LLAQASMPLQYWWDAFLAAVQLINGLPTSVLEGKSPLEVLHHKKLNFAGLRSFGCACYPC 660
LLAQA MPL YWW+AF AV LIN LPT V++ KSP + L K ++ +++FGCACYPC
Sbjct: 601 LLAQAKMPLHYWWEAFSTAVFLINRLPTQVIKNKSPYQQLFDKNPDYTAMKTFGCACYPC 660
Query: 661 LRPYHNHKFQFHSERCVYLGFSPSHKGHKCLSASGRVFISRHVQFNELMFPF---ALDFG 720
L+PY+ HK QFH+ +CV+LG+S SHKG+KCL+++GR+FISRHV FNE FPF L+
Sbjct: 661 LKPYNQHKLQFHTTKCVFLGYSGSHKGYKCLNSTGRIFISRHVVFNEHHFPFHDGFLNTR 698
Query: 721 KPS---SSPT-----FSPSHGPSILTWFQSLEHSHLSQENT 751
KP+ + PT SP+ G ++ Q L ++ S NT
Sbjct: 721 KPAEIITDPTSLLFPISPT-GSNVANEEQRLHTNNNSSSNT 698
BLAST of Lag0027536.1 vs. NCBI nr
Match:
GAU19483.1 (hypothetical protein TSUD_77270 [Trifolium subterraneum])
HSP 1 Score: 614.0 bits (1582), Expect = 1.7e-171
Identity = 325/712 (45.65%), Postives = 441/712 (61.94%), Query Frame = 0
Query: 1 MTPEIATQVMGFDNAKDLWSAIQSLFGIQSRAEEDFLRQTFQQSRKGTSKMTDYLRLMKS 60
MT EIATQ++ + +K LW QSL G +R++ +L+ F RKG KM DYL MK+
Sbjct: 88 MTTEIATQLLHCETSKQLWDEAQSLAGAHTRSQIIYLKSEFHSIRKGEMKMEDYLIKMKN 147
Query: 61 HADNLGQAGSPVSTRNLVSQVLLGLDEEYNPIVAMIHGRGDISWSEMQAELLVFEKRLEL 120
D L AG+PVST +L+ Q L GLD EYNP+V + + +SW ++QA+LL FE R+E
Sbjct: 148 LVDKLKLAGNPVSTSDLIIQTLNGLDSEYNPVVVKLSDQTTLSWVDLQAQLLTFESRIEQ 207
Query: 121 QNTQKAVVSFNHTPTVNVANNKNNMNQNNNRGWNYSHSNGQRGQFYNNNQRGGSNFNNGR 180
N + + T NVAN ++ +++N W S+S G
Sbjct: 208 LNN---LTNLTLNATANVANRSDHRGKSSNNNWRGSNSRG-------------------- 267
Query: 181 GRGGRGRGYGGYGNSNNRQVCQVCGRPGHSALMCYHRFDKEFSPNVNRGGNQNPNNSGNS 240
RGGRGRG G + CQVCG H A+ C+HRFDK +S N+S
Sbjct: 268 WRGGRGRGKSG------KNPCQVCGLSNHIAIDCFHRFDKTYS---------RSNHSAGH 327
Query: 241 GNTQPPSAFVANSNSQYACPETVIDSNWYADSGASNHVTGDFNNLANTKEYGGNEQVVIG 300
+AF+A+ NS V D +WY DSGASNHVT + E+ G +V+G
Sbjct: 328 DKQGSHNAFLASQNS-------VEDYDWYFDSGASNHVTHQTEKFQDLTEHHGKNSLVVG 387
Query: 301 NGESLPITFTGDTYLSNGAAILSLNNVLCVPEITKNLVSVSKLAQDNDVFIEFHGDCCII 360
NGE L I TG + L + L+L+++L VP ITKNL+SVSKLA DN++ +EF +CC +
Sbjct: 388 NGEKLAILATGSSKLKS----LNLHDILYVPNITKNLLSVSKLAADNNILVEFDENCCFV 447
Query: 361 KDKRSGQEVLKGVLRDGLYQLNNVTRVPGVNEGCSESISKNSTANNHSSVFVVSRYPLSV 420
KDK +G+ +LKG+L+DGLYQL+ R P S FV SV
Sbjct: 448 KDKLTGKVILKGLLKDGLYQLSGTKRNP--------------------SAFV------SV 507
Query: 421 NIIVSKNVWHKRLGHPASRVLDFVINDCKLQVKENEMLSFCESCQFGKSHNLPFPLSSSR 480
K WH+RLGHP ++VLD V+ CK++V ++ SFCE+CQ+GK H LPF SSS
Sbjct: 508 -----KESWHRRLGHPNNKVLDKVLESCKVKVPPSDNFSFCEACQYGKMHLLPFKSSSSH 567
Query: 481 AKYPFELIHSDLWGPAPVLSTDGFQYYVLFLDDYSRYLWLYPLKKKNDALAAFHHFISMV 540
A+ P EL+H+D+WGPAP++++ GF+YYV F+DD+SR+ W+YPLK+K++ + AF F ++
Sbjct: 568 AQEPLELVHTDVWGPAPIMTSSGFKYYVHFVDDFSRFTWIYPLKQKSETVQAFIQFKNLT 627
Query: 541 RNQFGCQIKILQSDNGGEYARIHQECYRLGIISRYSCPYTFAQNGRAERKHRHVVETGLT 600
NQF +IK++Q D GGEY + + GI R SCPYT QNGRAERKHRH+ E GLT
Sbjct: 628 ENQFNKRIKVIQCDGGGEYKPVQKLAVEAGIQFRMSCPYTSQQNGRAERKHRHITEFGLT 687
Query: 601 LLAQASMPLQYWWDAFLAAVQLINGLPTSVLEGKSPLEVLHHKKLNFAGLRSFGCACYPC 660
LLAQA MPL YWW+AF AV LIN LP+ V + +SP ++ K+ ++ L++FGCACYPC
Sbjct: 688 LLAQAQMPLHYWWEAFSTAVYLINRLPSQVTQNESPYSLMLQKEPDYKLLKTFGCACYPC 719
Query: 661 LRPYHNHKFQFHSERCVYLGFSPSHKGHKCLSASGRVFISRHVQFNELMFPF 713
L+PY+ HK Q+H+ RCV+LG+S SHKG+KCL++ GR+FISRHV FNE FPF
Sbjct: 748 LKPYNQHKLQYHTTRCVFLGYSNSHKGYKCLNSHGRIFISRHVIFNEDHFPF 719
BLAST of Lag0027536.1 vs. NCBI nr
Match:
PNX76291.1 (gag/pol polyprotein - maize retrotransposon Hopscotch, partial [Trifolium pratense])
HSP 1 Score: 612.5 bits (1578), Expect = 5.1e-171
Identity = 329/731 (45.01%), Postives = 455/731 (62.24%), Query Frame = 0
Query: 1 MTPEIATQVMGFDNAKDLWSAIQSLFGIQSRAEEDFLRQTFQQSRKGTSKMTDYLRLMKS 60
MT IATQ++ + + LW QSL G +R++ +L+ F +RKG KM DYL MK+
Sbjct: 88 MTVGIATQLLHCETSMQLWDEAQSLAGAHTRSQITYLKSEFHSTRKGEMKMEDYLIKMKN 147
Query: 61 HADNLGQAGSPVSTRNLVSQVLLGLDEEYNPIVAMIHGRGDISWSEMQAELLVFEKRLEL 120
AD L AG+P+ST +L+ Q L GLD EYNP+V + + +SW ++QA+LL FE R+E
Sbjct: 148 LADKLKLAGNPISTSDLIIQTLNGLDSEYNPVVVKLSDQTTLSWVDLQAQLLTFENRIEQ 207
Query: 121 QNTQKAVVSFNHTPTVNVANNKNNMNQNNNRGWNYSHSNGQRGQFYNNNQRGGSNFNNGR 180
N ++ + T NVA ++++RG ++ +N RG NNN R GSNF R
Sbjct: 208 LN---SLTNLTLNATANVA------KKSDHRGNRFNSNNNWRGS--NNNWR-GSNFRGWR 267
Query: 181 GRGGRGRGYGGYGNSNNRQVCQVCGRPGHSALMCYHRFDKEFSPNVNRGGNQNPNNSGNS 240
G GRGR + + CQVCG H A+ C++RFDK +S N+S N+
Sbjct: 268 GGRGRGRSF--------KTTCQVCGLDNHIAIDCFYRFDKTYS---------RSNHSANN 327
Query: 241 GNTQPPSAFVANSNSQYACPETVIDSNWYADSGASNHVTGDFNNLANTKEYGGNEQVVIG 300
+AF+A+ NS + D +WY DSGASNHVT + N E+ G +++G
Sbjct: 328 DKQGSHNAFLASQNS-------IEDYDWYFDSGASNHVTHQTDKFQNLSEHHGKNSLIVG 387
Query: 301 NGESLPITFTGDTYLSNGAAILSLNNVLCVPEITKNLVSVSKLAQDNDVFIEFHGDCCII 360
NGE L I TG + L + L+L+++L VP+ITKNL+SVSKLA DN++ +EF +CC +
Sbjct: 388 NGEKLEIVATGSSKLKS----LNLHDILYVPKITKNLLSVSKLAADNNILVEFDENCCFV 447
Query: 361 KDKRSGQEVLKGVLRDGLYQLNNVTRVPGVNEGCSESISKNSTANNHSSVFVVSRYPLSV 420
KDK +G+ +L+G+L+DGLYQL+ K+S+A
Sbjct: 448 KDKLTGKAILRGILKDGLYQLS----------------EKDSSA---------------- 507
Query: 421 NIIVSKNVWHKRLGHPASRVLDFVINDCKLQVKENEMLSFCESCQFGKSHNLPFPLSSSR 480
+ K WH++LGHP ++VLD V+ C +++ ++ SFCE+CQ+GK H LPF S S
Sbjct: 508 -YVSIKESWHRKLGHPNNKVLDIVLKSCNVKLSPSDQFSFCEACQYGKMHFLPFKTSFSH 567
Query: 481 AKYPFELIHSDLWGPAPVLSTDGFQYYVLFLDDYSRYLWLYPLKKKNDALAAFHHFISMV 540
AK EL+H+D+WGPAP++S+ GF+YYV F+DD++R+ W+YPLK+K+D AF F +MV
Sbjct: 568 AKEILELVHTDVWGPAPIISSSGFKYYVHFIDDFTRFTWIYPLKQKSDTAHAFIQFKNMV 627
Query: 541 RNQFGCQIKILQSDNGGEYARIHQECYRLGIISRYSCPYTFAQNGRAERKHRHVVETGLT 600
NQF +IK +Q D GGEY + + GI R SCPYT QNGRAERKHRH+ E GLT
Sbjct: 628 ENQFSKKIKTIQCDGGGEYKPVQKHAIEAGIQFRMSCPYTSQQNGRAERKHRHIAEFGLT 687
Query: 601 LLAQASMPLQYWWDAFLAAVQLINGLPTSVLEGKSPLEVLHHKKLNFAGLRSFGCACYPC 660
LLAQA MPL YWW+AF AV LIN LP+SV KSP +LH ++ ++ L+ FGCACYP
Sbjct: 688 LLAQAKMPLNYWWEAFSTAVYLINRLPSSVTHNKSPYSLLHKREPDYNSLKPFGCACYPF 745
Query: 661 LRPYHNHKFQFHSERCVYLGFSPSHKGHKCLSASGRVFISRHVQFNELMFPF---ALDFG 720
L+PY+ HK QFH+ RCV+LG+S SHKG+KC+++ GR+FISRHV FNE FPF L+
Sbjct: 748 LKPYNKHKLQFHTTRCVFLGYSNSHKGYKCVNSHGRIFISRHVVFNEDHFPFHDGFLNTR 745
Query: 721 KPSSSPTFSPS 729
P + T SPS
Sbjct: 808 VPLKTLTESPS 745
BLAST of Lag0027536.1 vs. NCBI nr
Match:
PNX94503.1 (putative retrotransposon Ty1-copia subclass protein, partial [Trifolium pratense])
HSP 1 Score: 581.6 bits (1498), Expect = 9.5e-162
Identity = 321/717 (44.77%), Postives = 437/717 (60.95%), Query Frame = 0
Query: 1 MTPEIATQVMGFDNAKDLWSAIQSLFGIQSRAEEDFLRQTFQQSRKGTSKMTDYLRLMKS 60
MT +IATQV+ + +K LW QSL G +R+ +L+ F + K KM YL MK+
Sbjct: 87 MTVDIATQVLHCETSKQLWDEAQSLAGAHTRSRIIYLKSEFHNTHKREMKMEQYLAKMKN 146
Query: 61 HADNLGQAGSPVSTRNLVSQVLLGLDEEYNPIVAMIHGRGDISWSEMQAELLVFEKRLEL 120
AD L AGSP+S+ +L+ Q L GLD EYNP+V + + +ISW + QA+LL FE RL+
Sbjct: 147 LADKLKLAGSPISSSDLMIQTLNGLDSEYNPVVVKLSDQTNISWVDFQAQLLAFESRLD- 206
Query: 121 QNTQKAVVSFNHTPTVNVANNKNNMNQNNNRGWNYSHSNGQRGQFYNNNQRGGSNFNNGR 180
NN NN+N N + N++ N G + + RGG +N R
Sbjct: 207 -----------------QLNNFNNINLNASA--NFASKNESGGNKFGS--RGGWRGSNSR 266
Query: 181 G-RGGRGRGYGGYGNSNNRQVCQVCGRPGHSALMCYHRFDKEFSPNVNRGGNQNPNNSGN 240
G RGGRGR + R +CQ+CG+ GH+A CY+RFDK ++ +N G
Sbjct: 267 GMRGGRGR---ARMSKPPRPICQICGKFGHTAAQCYYRFDKSYT-------EKNHYAEGE 326
Query: 241 SGNTQPPSAFVANSNSQYACPETVIDSNWYADSGASNHVTGDFNNLANTKEYGGNEQVVI 300
+ SAFVA+ P D WY DSGASNHVT L + E G +++
Sbjct: 327 GSH----SAFVAS-------PYHGQDYEWYFDSGASNHVTHQSGQLQDLNENNGKNSLLV 386
Query: 301 GNGESLPITFTGDTYLSNGAAILSLNNVLCVPEITKNLVSVSKLAQDNDVFIEFHGDCCI 360
GNGE L I +G T L++ ++L NVL VPEITKNL+SVSKL DN+ +EF + C
Sbjct: 387 GNGEKLKILASGSTKLND----VNLRNVLYVPEITKNLLSVSKLTIDNNALVEFDENYCY 446
Query: 361 IKDKRSGQEVLKGVLRDGLYQLNNVTRVPGVNEGCSESISKNSTANNHSSVFVVSRYPLS 420
+KDK +G+ +LKG L+DGLYQL+ P + C+
Sbjct: 447 VKDKLTGKALLKGRLKDGLYQLSANKEPPTNKDPCA------------------------ 506
Query: 421 VNIIVSKNVWHKRLGHPASRVLDFVINDCKLQVKENEMLSFCESCQFGKSHNLPFPLSSS 480
I K +WH++LGHP ++VL+ V+ D +++ ++ +FCE+CQFGK H LPF SSS
Sbjct: 507 --YISLKEIWHRKLGHPNNKVLEKVLKDNNVKISPSDKFTFCEACQFGKLHLLPFKTSSS 566
Query: 481 RAKYPFELIHSDLWGPAPVLSTDGFQYYVLFLDDYSRYLWLYPLKKKNDALAAFHHFISM 540
AK P +LIH+D+WGPAP+LS F+YYV FLDD+SR+ W++PLK+K++ + AF+ F ++
Sbjct: 567 HAKEPLDLIHTDVWGPAPILSQSNFKYYVHFLDDFSRFTWIFPLKQKSETIHAFNQFKNL 626
Query: 541 VRNQFGCQIKILQSDNGGEYARIHQECYRLGIISRYSCPYTFAQNGRAERKHRHVVETGL 600
V NQF +IK+++ D GGEY + + GI + SCPYT QNGRAERKHRHV E GL
Sbjct: 627 VENQFNKKIKVIRCDGGGEYKPVQKCAIDSGIQFQMSCPYTSQQNGRAERKHRHVTELGL 686
Query: 601 TLLAQASMPLQYWWDAFLAAVQLINGLPTSVLEGKSPLEVLHHKKLNFAGLRSFGCACYP 660
TLLAQA MPL YWW+AF AV LIN LP+SV +SP ++ K+ ++ L+ FGCACYP
Sbjct: 687 TLLAQAKMPLSYWWEAFSTAVYLINRLPSSVNPNESPYTLVFKKEPDYTALKPFGCACYP 730
Query: 661 CLRPYHNHKFQFHSERCVYLGFSPSHKGHKCLSASGRVFISRHVQFNELMFPFALDF 717
CL+PY+ HK QFH+ RCV+LG+S SHKG+KC+++ GRVF+SRHV FNE FPF F
Sbjct: 747 CLKPYNQHKLQFHTTRCVFLGYSNSHKGYKCVNSHGRVFVSRHVVFNENHFPFQEGF 730
BLAST of Lag0027536.1 vs. NCBI nr
Match:
GAU51268.1 (hypothetical protein TSUD_412550 [Trifolium subterraneum])
HSP 1 Score: 576.2 bits (1484), Expect = 4.0e-160
Identity = 316/713 (44.32%), Postives = 433/713 (60.73%), Query Frame = 0
Query: 1 MTPEIATQVMGFDNAKDLWSAIQSLFGIQSRAEEDFLRQTFQQSRKGTSKMTDYLRLMKS 60
M +IATQ++ + +K LW QSL G +++ +L+ F +RKG KM +YL MK+
Sbjct: 88 MAIDIATQLLHCETSKQLWDETQSLAGAHTKSRITYLKSEFHNTRKGEMKMEEYLIKMKN 147
Query: 61 HADNLGQAGSPVSTRNLVSQVLLGLDEEYNPIVAMIHGRGDISWSEMQAELLVFEKRLEL 120
+D L AGSP+S +L+ Q L GLD EYNP+V + + ++SW ++QA+LL FE RL+
Sbjct: 148 LSDKLKLAGSPISNSDLMIQTLNGLDAEYNPVVVKLSDQINLSWVDVQAQLLAFESRLD- 207
Query: 121 QNTQKAVVSFNHTPTVNVANNKNNMNQNNNRGWNYSHSNGQRGQFYNNNQRGGSNFNNGR 180
FN+ + + + N N+ RG + N RG +N R
Sbjct: 208 --------QFNNFSGLTLNASANFANKTEFRGNKF-------------NSRGNWRRSNFR 267
Query: 181 G-RGGRGRGYGGYGNSNNRQVCQVCGRPGHSALMCYHRFDKEFSPNVNRGGNQNPNNSGN 240
G RGGRG+G SN + CQVC GH A+ C +RFD+ P R + + G+
Sbjct: 268 GMRGGRGKG----RMSNTK--CQVCNGTGHIAVDCSYRFDR---PYTGRNYSTEADKQGS 327
Query: 241 SGNTQPPSAFVANSNSQYACPETVIDSNWYADSGASNHVTGDFNNLANTKEYGGNEQVVI 300
SAF+A+ P D WY DSGA+NHVT + E+ G +++
Sbjct: 328 H------SAFIAS-------PYHGQDYEWYFDSGANNHVTHQTDKFQGFNEHNGKNSLMV 387
Query: 301 GNGESLPITFTGDTYLSNGAAILSLNNVLCVPEITKNLVSVSKLAQDNDVFIEFHGDCCI 360
GNGE L I +G T L+N L+L++VL VP+ITKNL+SVSKL DN++ +EF +CC
Sbjct: 388 GNGEKLKIVASGSTKLNN----LNLHDVLYVPQITKNLLSVSKLTADNNILVEFDANCCS 447
Query: 361 IKDKRSGQEVLKGVLRDGLYQLNNVTRVPGVNEGCSESISKNSTANNHSSVFVVSRYPLS 420
+KDK +GQ +LKG L+DGLYQL+N E C K S
Sbjct: 448 VKDKLTGQTLLKGRLKDGLYQLSN-------KEPCVYMSVKES----------------- 507
Query: 421 VNIIVSKNVWHKRLGHPASRVLDFVINDCKLQVKENEMLSFCESCQFGKSHNLPFPLSSS 480
WH++LGHP ++VLD V+ DC +++ ++ SFCE+CQFGK H LPF SSS
Sbjct: 508 ---------WHRKLGHPNNKVLDKVLKDCNVKISHSDQFSFCEACQFGKLHLLPFKPSSS 567
Query: 481 RAKYPFELIHSDLWGPAPVLSTDGFQYYVLFLDDYSRYLWLYPLKKKNDALAAFHHFISM 540
+ P LIHSD+WGPAP+LS GF+YYV F+DD+SR+ W++PLK+K+D + AF F ++
Sbjct: 568 HVQEPLALIHSDVWGPAPILSPSGFKYYVHFIDDFSRFTWIFPLKQKSDTIHAFIQFKNL 627
Query: 541 VRNQFGCQIKILQSDNGGEYARIHQECYRLGIISRYSCPYTFAQNGRAERKHRHVVETGL 600
NQF +IKI+Q D GGEY + + GI R SCPYT QNGRAERKHRHV E GL
Sbjct: 628 AENQFNKKIKIIQCDGGGEYKAVQKVSIEAGIQFRMSCPYTSQQNGRAERKHRHVAELGL 687
Query: 601 TLLAQASMPLQYWWDAFLAAVQLINGLPTSVLEGKSPLEVLHHKKLNFAGLRSFGCACYP 660
TLLAQA MPL+YWW+AF AV LIN LP+SV +SP ++ ++ ++ L+ FGCACYP
Sbjct: 688 TLLAQAKMPLRYWWEAFSTAVYLINRLPSSVNPNESPYSLMFKREPDYNALKPFGCACYP 719
Query: 661 CLRPYHNHKFQFHSERCVYLGFSPSHKGHKCLSASGRVFISRHVQFNELMFPF 713
CL+PY+ HK QFH+ RCV++G+S SHKG+KC+++ GR+F+SRHV FNE FPF
Sbjct: 748 CLKPYNQHKLQFHTTRCVFVGYSNSHKGYKCINSHGRIFVSRHVIFNENHFPF 719
BLAST of Lag0027536.1 vs. ExPASy Swiss-Prot
Match:
Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)
HSP 1 Score: 385.2 bits (988), Expect = 1.7e-105
Identity = 251/709 (35.40%), Postives = 369/709 (52.05%), Query Frame = 0
Query: 15 AKDLWSAIQSLFGIQSRAEEDFLRQTFQQSRKGTSKMTDYLRLMKSHADNLGQAGSPVST 74
A +W ++ ++ S LR +Q KGT + DY++ + + D L G P+
Sbjct: 106 AAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMDH 165
Query: 75 RNLVSQVLLGLDEEYNPIVAMIHGRG-DISWSEMQAELLVFEKRLELQNTQKAVVSFNHT 134
V +VL L EEY P++ I + + +E+ LL E ++ AV S
Sbjct: 166 DEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHERLLNHESKI------LAVSSATVI 225
Query: 135 P-TVNVANNKNNMNQNNNRGWNYSHSNGQRGQFYNNNQRGGSNFNNGRGRGGRGRGYGGY 194
P T N +++N NNN +NG R Y+N NN + + +
Sbjct: 226 PITANAVSHRNTTTTNNN-------NNGNRNNRYDNRN------NNNNSKPWQQSSTNFH 285
Query: 195 GNSNNRQ----VCQVCGRPGHSALMCYHRFDKEFSPNVNRGGNQNPNNSGNSGNTQPPSA 254
N+N + CQ+CG GHSA C + F +VN + QPPS
Sbjct: 286 PNNNQSKPYLGKCQICGVQGHSAKRCSQL--QHFLSSVN--------------SQQPPSP 345
Query: 255 FVA-NSNSQYACPETVIDSNWYADSGASNHVTGDFNNLANTKEYGGNEQVVIGNGESLPI 314
F + A +NW DSGA++H+T DFNNL+ + Y G + V++ +G ++PI
Sbjct: 346 FTPWQPRANLALGSPYSSNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPI 405
Query: 315 TFTGDTYLSNGAAILSLNNVLCVPEITKNLVSVSKLAQDNDVFIEFHGDCCIIKDKRSGQ 374
+ TG T LS + L+L+N+L VP I KNL+SV +L N V +EF +KD +G
Sbjct: 406 SHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGV 465
Query: 375 EVLKGVLRDGLYQLNNVTRVPGVNEGCSESISKNSTANNHSSVFVVSRYPLSVNIIVSKN 434
+L+G +D LY+ + P + S+ HSS
Sbjct: 466 PLLQGKTKDELYEWPIASSQP------VSLFASPSSKATHSS------------------ 525
Query: 435 VWHKRLGHPASRVLDFVINDCKLQV--KENEMLSFCESCQFGKSHNLPFPLSSSRAKYPF 494
WH RLGHPA +L+ VI++ L V ++ LS C C KS+ +PF S+ + P
Sbjct: 526 -WHARLGHPAPSILNSVISNYSLSVLNPSHKFLS-CSDCLINKSNKVPFSQSTINSTRPL 585
Query: 495 ELIHSDLWGPAPVLSTDGFQYYVLFLDDYSRYLWLYPLKKKNDALAAFHHFISMVRNQFG 554
E I+SD+W +P+LS D ++YYV+F+D ++RY WLYPLK+K+ F F +++ N+F
Sbjct: 586 EYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQ 645
Query: 555 CQIKILQSDNGGEYARIHQECYRLGIISRYSCPYTFAQNGRAERKHRHVVETGLTLLAQA 614
+I SDNGGE+ + + + GI S P+T NG +ERKHRH+VETGLTLL+ A
Sbjct: 646 TRIGTFYSDNGGEFVALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHA 705
Query: 615 SMPLQYWWDAFLAAVQLINGLPTSVLEGKSPLEVLHHKKLNFAGLRSFGCACYPCLRPYH 674
S+P YW AF AV LIN LPT +L+ +SP + L N+ LR FGCACYP LRPY+
Sbjct: 706 SIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYN 752
Query: 675 NHKFQFHSERCVYLGFSPSHKGHKCLS-ASGRVFISRHVQFNELMFPFA 714
HK S +CV+LG+S + + CL + R++ISRHV+F+E FPF+
Sbjct: 766 QHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDENCFPFS 752
BLAST of Lag0027536.1 vs. ExPASy Swiss-Prot
Match:
Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)
HSP 1 Score: 359.4 bits (921), Expect = 1.0e-97
Identity = 240/673 (35.66%), Postives = 353/673 (52.45%), Query Frame = 0
Query: 63 DNLGQAGSPVSTRNLVSQVLLGLDEEYNPIVAMIHGRG-DISWSEMQAELLVFEKRLELQ 122
D L G P+ V +VL L ++Y P++ I + S +E+ L+ E +L
Sbjct: 135 DQLALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAKDTPPSLTEIHERLINRESKLLAL 194
Query: 123 NTQKAV-VSFNHTPTVNVANNKNNMNQNNNRGWNYSHSNGQRGQFYNNNQRGGSNFNNGR 182
N+ + V ++ N N N+N N+ +NR NY+++N + + ++ GS +N +
Sbjct: 195 NSAEVVPITANVVTHRNTNTNRNQNNRGDNR--NYNNNNNRSNSWQPSS--SGSRSDNRQ 254
Query: 183 GRGGRGRGYGGYGNSNNRQVCQVCGRPGHSALMC--YHRFDKEFSPNVNRGGNQNPNNSG 242
+ GR CQ+C GHSA C H+F Q+ N
Sbjct: 255 PKPYLGR-------------CQICSVQGHSAKRCPQLHQF-------------QSTTNQQ 314
Query: 243 NSGNTQPPSAFVANSNSQYACPETVIDSNWYADSGASNHVTGDFNNLANTKEYGGNEQVV 302
S T P + + +N P +NW DSGA++H+T DFNNL+ + Y G + V+
Sbjct: 315 QS--TSPFTPWQPRANLAVNSPYNA--NNWLLDSGATHHITSDFNNLSFHQPYTGGDDVM 374
Query: 303 IGNGESLPITFTGDTYLSNGAAILSLNNVLCVPEITKNLVSVSKLAQDNDVFIEFHGDCC 362
I +G ++PIT TG L + L LN VL VP I KNL+SV +L N V +EF
Sbjct: 375 IADGSTIPITHTGSASLPTSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASF 434
Query: 363 IIKDKRSGQEVLKGVLRDGLYQLNNVTRVPGVNEGCSESISKNSTANNHSSVFVVSRYPL 422
+KD +G +L+G +D LY+ P + + + HSS
Sbjct: 435 QVKDLNTGVPLLQGKTKDELYEW------PIASSQAVSMFASPCSKATHSS--------- 494
Query: 423 SVNIIVSKNVWHKRLGHPASRVLDFVINDCKLQV-KENEMLSFCESCQFGKSHNLPFPLS 482
WH RLGHP+ +L+ VI++ L V + L C C KSH +PF S
Sbjct: 495 ----------WHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNS 554
Query: 483 SSRAKYPFELIHSDLWGPAPVLSTDGFQYYVLFLDDYSRYLWLYPLKKKNDALAAFHHFI 542
+ + P E I+SD+W +P+LS D ++YYV+F+D ++RY WLYPLK+K+ F F
Sbjct: 555 TITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFK 614
Query: 543 SMVRNQFGCQIKILQSDNGGEYARIHQECYRLGIISRYSCPYTFAQNGRAERKHRHVVET 602
S+V N+F +I L SDNGGE+ + + GI S P+T NG +ERKHRH+VE
Sbjct: 615 SLVENRFQTRIGTLYSDNGGEFVVLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEM 674
Query: 603 GLTLLAQASMPLQYWWDAFLAAVQLINGLPTSVLEGKSPLEVLHHKKLNFAGLRSFGCAC 662
GLTLL+ AS+P YW AF AV LIN LPT +L+ +SP + L + N+ L+ FGCAC
Sbjct: 675 GLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCAC 734
Query: 663 YPCLRPYHNHKFQFHSERCVYLGFSPSHKGHKCLS-ASGRVFISRHVQFNELMFPFA-LD 722
YP LRPY+ HK + S++C ++G+S + + CL +GR++ SRHVQF+E FPF+ +
Sbjct: 735 YPWLRPYNRHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDERCFPFSTTN 747
Query: 723 FGKPSSSPTFSPS 729
FG +S S S
Sbjct: 795 FGVSTSQEQRSDS 747
BLAST of Lag0027536.1 vs. ExPASy Swiss-Prot
Match:
P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)
HSP 1 Score: 189.9 bits (481), Expect = 1.1e-46
Identity = 157/558 (28.14%), Postives = 239/558 (42.83%), Query Frame = 0
Query: 184 GRGRGY----------GGYGNSNNR-----QVCQVCGRPGHSALMCYHRFDKEFSPNVNR 243
GRGR Y G G S NR + C C +PGH C PN +
Sbjct: 200 GRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGHFKRDC---------PNPRK 259
Query: 244 GGNQ---NPNNSGNSGNTQPPSAFVANSNSQYACPE-TVIDSNWYADSGASNHVTGDFNN 303
G + N+ + Q V N + C + +S W D+ AS+H T +
Sbjct: 260 GKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPESEWVVDTAASHHAT-PVRD 319
Query: 304 LANTKEYGGNEQVVIGNGESLPITFTGDTYL-SNGAAILSLNNVLCVPEITKNLVSVSKL 363
L G V +GN I GD + +N L L +V VP++ NL +S +
Sbjct: 320 LFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNL--ISGI 379
Query: 364 AQDNDVFIEFHGDCCIIKDKRSGQEVLKGVLRDGLYQLNNVTRVPGVNEGCSESISKNST 423
A D D + + + K S + KGV R LY+ N +N E
Sbjct: 380 ALDRDGYESYFANQKWRLTKGS-LVIAKGVARGTLYRTNAEICQGELNAAQDE------- 439
Query: 424 ANNHSSVFVVSRYPLSVNIIVSKNVWHKRLGHPASRVLDFVINDCKLQVKENEMLSFCES 483
+S ++WHKR+GH + + L + + + + C+
Sbjct: 440 --------------------ISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDY 499
Query: 484 CQFGKSHNLPFPLSSSRAKYPFELIHSDLWGPAPVLSTDGFQYYVLFLDDYSRYLWLYPL 543
C FGK H + F SS R +L++SD+ GP + S G +Y+V F+DD SR LW+Y L
Sbjct: 500 CLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYIL 559
Query: 544 KKKNDALAAFHHFISMVRNQFGCQIKILQSDNGGEYA--RIHQECYRLGIISRYSCPYTF 603
K K+ F F ++V + G ++K L+SDNGGEY + C GI + P T
Sbjct: 560 KTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTP 619
Query: 604 AQNGRAERKHRHVVETGLTLLAQASMPLQYWWDAFLAAVQLINGLPTSVLEGKSPLEVLH 663
NG AER +R +VE ++L A +P +W +A A LIN P+ L + P V
Sbjct: 620 QHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWT 679
Query: 664 HKKLNFAGLRSFGCACYPCLRPYHNHKFQFHSERCVYLGFSPSHKGHKCLS-ASGRVFIS 719
+K+++++ L+ FGC + + K S C+++G+ G++ +V S
Sbjct: 680 NKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRS 717
BLAST of Lag0027536.1 vs. ExPASy Swiss-Prot
Match:
P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)
HSP 1 Score: 164.5 bits (415), Expect = 4.8e-39
Identity = 147/529 (27.79%), Postives = 229/529 (43.29%), Query Frame = 0
Query: 193 GNSNNRQVCQVCGRPGHSALMCYHRFDKEFSPNVNRGGNQNPNNSGNSGNTQPPSAFVAN 252
GNS + C CGR GH C+H K N N+ + + + G AF+
Sbjct: 224 GNSKYKVKCHHCGREGHIKKDCFHY--KRILNNKNKENEKQVQTATSHG-----IAFMVK 283
Query: 253 SNSQYACPETVIDS-NWYADSGASNHVTGDFNNLANTKEYGGNEQVVIG-NGESLPITFT 312
+ +V+D+ + DSGAS+H+ D + ++ E ++ + GE + T
Sbjct: 284 EVNN----TSVMDNCGFVLDSGASDHLINDESLYTDSVEVVPPLKIAVAKQGEFIYATKR 343
Query: 313 GDTYLSNGAAILSLNNVLCVPEITKNLVSVSKLAQDNDVFIEFHGDCCIIKDKRSGQEVL 372
G L N I +L +VL E NL+SV +L Q+ + IEF +SG +
Sbjct: 344 GIVRLRNDHEI-TLEDVLFCKEAAGNLMSVKRL-QEAGMSIEF---------DKSGVTIS 403
Query: 373 KGVLRDGLYQLNNVTRVPGVNEGCSESISKNSTANNHSSVFVVSRYPLSVNIIVSKNVWH 432
K L + KNS N+ V Y ++ + +WH
Sbjct: 404 KNGL----------------------MVVKNSGMLNNVPVINFQAYSINAKHKNNFRLWH 463
Query: 433 KRLGHPASRVLDFVINDCK-LQVKENEMLS-------------FCESCQFGKSHNLPFP- 492
+R GH I+D K L++K M S CE C GK LPF
Sbjct: 464 ERFGH---------ISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQ 523
Query: 493 -LSSSRAKYPFELIHSDLWGPAPVLSTDGFQYYVLFLDDYSRYLWLYPLKKKNDALAAFH 552
+ K P ++HSD+ GP ++ D Y+V+F+D ++ Y Y +K K+D + F
Sbjct: 524 LKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQ 583
Query: 553 HFISMVRNQFGCQIKILQSDNGGEYA--RIHQECYRLGIISRYSCPYTFAQNGRAERKHR 612
F++ F ++ L DNG EY + Q C + GI + P+T NG +ER R
Sbjct: 584 DFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIR 643
Query: 613 HVVETGLTLLAQASMPLQYWWDAFLAAVQLINGLPTSVL--EGKSPLEVLHHKKLNFAGL 672
+ E T+++ A + +W +A L A LIN +P+ L K+P E+ H+KK L
Sbjct: 644 TITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHL 696
Query: 673 RSFGCACYPCLRPYHNHKFQFHSERCVYLGFSPSHKGHKCLSASGRVFI 700
R FG Y ++ KF S + +++G+ P+ G K A FI
Sbjct: 704 RVFGATVYVHIKNKQG-KFDDKSFKSIFVGYEPN--GFKLWDAVNEKFI 696
BLAST of Lag0027536.1 vs. ExPASy Swiss-Prot
Match:
Q07791 (Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-DR3 PE=3 SV=1)
HSP 1 Score: 109.0 bits (271), Expect = 2.4e-22
Identity = 113/454 (24.89%), Postives = 186/454 (40.97%), Query Frame = 0
Query: 260 PETVIDSN------WYADSGASNHVTGDFNNLANTKEYGGNEQVVIGNGESLPITFTGDT 319
P IDSN DSGAS + + L + +V + +PI G+
Sbjct: 440 PTRTIDSNDELPDHLLIDSGASQTLVRSAHYLHHATP-NSEINIVDAQKQDIPINAIGNL 499
Query: 320 YLSNGAAILSLNNVLCVPEITKNLVSVSKLAQDNDVFIEFHGDCCIIKD--KRSGQEVLK 379
+ + + L P I +L+S+S+LA N C ++ +RS VL
Sbjct: 500 HFNFQNGTKTSIKALHTPNIAYDLLSLSELANQNIT-------ACFTRNTLERSDGTVLA 559
Query: 380 GVLRDG-LYQLNNVTRVPGVNEGCSESISKNSTANNHSSVFVVSRYPLSVNIIVSKNVWH 439
+++ G Y L+ +P ISK T NN + V++YP + H
Sbjct: 560 PIVKHGDFYWLSKKYLIP-------SHISK-LTINNVNKSKSVNKYPYP--------LIH 619
Query: 440 KRLGHPASRVLDFVI-NDCKLQVKE------NEMLSFCESCQFGKSHNLPFPLSSSRAKY 499
+ LGH R + + + +KE N C C GKS + SR KY
Sbjct: 620 RMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRH-IKGSRLKY 679
Query: 500 -----PFELIHSDLWGPAPVLSTDGFQYYVLFLDDYSRYLWLYPL--KKKNDALAAFHHF 559
PF+ +H+D++GP L Y++ F D+ +R+ W+YPL +++ L F
Sbjct: 680 QESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSI 739
Query: 560 ISMVRNQFGCQIKILQSDNGGEYAR--IHQECYRLGIISRYSCPYTFAQNGRAERKHRHV 619
++ ++NQF ++ ++Q D G EY +H+ GI + Y+ +G AER +R +
Sbjct: 740 LAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTL 799
Query: 620 VETGLTLLAQASMPLQYWWDAFLAAVQLINGLPTSVLEGKSPLEVLHHKKLNFAGLRSFG 679
+ TLL + +P W+ A + + N L S KS + L+ + FG
Sbjct: 800 LNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSL-VSPKNDKSARQHAGLAGLDITTILPFG 859
Query: 680 CACYPCLRPYHNHKFQFHSERCVYLGFSPSHKGH 689
P + HN + H PS +
Sbjct: 860 ---QPVIVNNHNPDSKIHPRGIPGYALHPSRNSY 864
BLAST of Lag0027536.1 vs. ExPASy TrEMBL
Match:
A0A151S6M8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_027809 PE=4 SV=1)
HSP 1 Score: 618.6 bits (1594), Expect = 3.4e-173
Identity = 344/761 (45.20%), Postives = 467/761 (61.37%), Query Frame = 0
Query: 1 MTPEIATQVMGFDNAKDLWSAIQSLFGIQSRAEEDFLRQTFQQSRKGTSKMTDYLRLMKS 60
MT E+ATQ++ + ++ +W QSL G +R+ FL+ F ++RKG KM +YL MK
Sbjct: 1 MTQEVATQLLHCETSQQIWEDAQSLAGAHTRSRITFLKTEFHRTRKGGLKMEEYLTKMKE 60
Query: 61 HADNLGQAGSPVSTRNLVSQVLLGLDEEYNPIVAMIHGRGDISWSEMQAELLVFEKRLEL 120
AD+L AGS VST +LV+Q L GLD EYNPIV + + ++W EMQA+LL +E RLE
Sbjct: 61 IADDLALAGSSVSTMDLVTQTLAGLDNEYNPIVVQLSDKEHLTWVEMQAQLLTYENRLEQ 120
Query: 121 QNTQKAVVSFNHTPTVNVANNKNNMNQNNNRGWNYSHSNGQRGQFYNNNQRGGSNFNNGR 180
N Q + T+N ++N + + N RG + + G+ GQ N
Sbjct: 121 INNQSNL-------TLNPSSNISTI-LYNRRGKSNAFGGGRGGQI------------NRG 180
Query: 181 GRGGRGRGYGGYGNSNNRQVCQVCGRPGHSALMCYHRFDKEFSPNVNRGGNQNPNNSGNS 240
RGGRGRG + +R VCQVC +PGH+A CYHRF+K + + + ++ +
Sbjct: 181 ARGGRGRGRA----TKDRIVCQVCCKPGHAASHCYHRFNKNY---IGQNSDEQKSEKDKE 240
Query: 241 GNTQPPSAFVANSNSQYACPETVIDSNWYADSGASNHVTGDFNNLANTKEYGGNEQVVIG 300
N N N+ A P TV D +WY DSGASNHVT D N + E G + +G
Sbjct: 241 QN--------YNFNAYVASPSTVEDLDWYFDSGASNHVTYDQNKVQEVNENDGKSFLTVG 300
Query: 301 NGESLPITFTGDTYLSNGAAILSLNNVLCVPEITKNLVSVSKLAQDNDVFIEFHGDCCII 360
NG +L I GD+ L L+L ++L VP+ITKNL+S+SKL DND+++EFH C +
Sbjct: 301 NGANLKIIACGDSSLDTQQKSLNLKDILYVPKITKNLLSISKLTFDNDIYVEFHDVACFV 360
Query: 361 KDKRSGQEVLKGVLRDGLYQLNNVTRVPGVNEGCSESISKNSTANNHSSVFVVSRYPLSV 420
KDK +G+ +L+G ++DGLYQL PG +++ N VF
Sbjct: 361 KDKLTGRILLEGKIKDGLYQL------PG----------GSTSTNKRPHVF--------- 420
Query: 421 NIIVSKNVWHKRLGHPASRVLDFVINDCKLQVKENEMLSFCESCQFGKSHNLPFPLSSSR 480
K WH++LGHP S+VL+ V+ C ++ E FCE+CQFGK+HNLPF S S
Sbjct: 421 --FSIKETWHRKLGHPNSKVLNEVMKLCNIEASPCENFEFCEACQFGKAHNLPFQNSVSC 480
Query: 481 AKYPFELIHSDLWGPAPVLSTDGFQYYVLFLDDYSRYLWLYPLKKKNDALAAFHHFISMV 540
AK P +L+HSD+WGPAP+ S GF+YYVLFLDD+SR+ W+YPLK+K+D AF F ++V
Sbjct: 481 AKEPLDLVHSDVWGPAPISSVSGFKYYVLFLDDWSRFTWIYPLKQKSDVFQAFIQFRNLV 540
Query: 541 RNQFGCQIKILQSDNGGEYARIHQECYRLGIISRYSCPYTFAQNGRAERKHRHVVETGLT 600
NQF +IK LQ D GGE+ + + + GI R SCPYT AQNGRAERKHRHVVE+GLT
Sbjct: 541 ENQFNKRIKTLQCDGGGEFKSLSKVLIKTGIQLRESCPYTSAQNGRAERKHRHVVESGLT 600
Query: 601 LLAQASMPLQYWWDAFLAAVQLINGLPTSVLEGKSPLEVLHHKKLNFAGLRSFGCACYPC 660
LLAQA MPL YWW+AF AV LIN LPT V++ KSP + L K ++ +++FGCACYPC
Sbjct: 601 LLAQAKMPLHYWWEAFSTAVFLINRLPTQVIKNKSPYQQLFDKNPDYTAMKTFGCACYPC 660
Query: 661 LRPYHNHKFQFHSERCVYLGFSPSHKGHKCLSASGRVFISRHVQFNELMFPF---ALDFG 720
L+PY+ HK QFH+ +CV+LG+S SHKG+KCL+++GR+FISRHV FNE FPF L+
Sbjct: 661 LKPYNQHKLQFHTTKCVFLGYSGSHKGYKCLNSTGRIFISRHVVFNEHHFPFHDGFLNTR 698
Query: 721 KPS---SSPT-----FSPSHGPSILTWFQSLEHSHLSQENT 751
KP+ + PT SP+ G ++ Q L ++ S NT
Sbjct: 721 KPAEIITDPTSLLFPISPT-GSNVANEEQRLHTNNNSSSNT 698
BLAST of Lag0027536.1 vs. ExPASy TrEMBL
Match:
A0A2Z6MBG6 (Integrase catalytic domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_77270 PE=4 SV=1)
HSP 1 Score: 614.0 bits (1582), Expect = 8.4e-172
Identity = 325/712 (45.65%), Postives = 441/712 (61.94%), Query Frame = 0
Query: 1 MTPEIATQVMGFDNAKDLWSAIQSLFGIQSRAEEDFLRQTFQQSRKGTSKMTDYLRLMKS 60
MT EIATQ++ + +K LW QSL G +R++ +L+ F RKG KM DYL MK+
Sbjct: 88 MTTEIATQLLHCETSKQLWDEAQSLAGAHTRSQIIYLKSEFHSIRKGEMKMEDYLIKMKN 147
Query: 61 HADNLGQAGSPVSTRNLVSQVLLGLDEEYNPIVAMIHGRGDISWSEMQAELLVFEKRLEL 120
D L AG+PVST +L+ Q L GLD EYNP+V + + +SW ++QA+LL FE R+E
Sbjct: 148 LVDKLKLAGNPVSTSDLIIQTLNGLDSEYNPVVVKLSDQTTLSWVDLQAQLLTFESRIEQ 207
Query: 121 QNTQKAVVSFNHTPTVNVANNKNNMNQNNNRGWNYSHSNGQRGQFYNNNQRGGSNFNNGR 180
N + + T NVAN ++ +++N W S+S G
Sbjct: 208 LNN---LTNLTLNATANVANRSDHRGKSSNNNWRGSNSRG-------------------- 267
Query: 181 GRGGRGRGYGGYGNSNNRQVCQVCGRPGHSALMCYHRFDKEFSPNVNRGGNQNPNNSGNS 240
RGGRGRG G + CQVCG H A+ C+HRFDK +S N+S
Sbjct: 268 WRGGRGRGKSG------KNPCQVCGLSNHIAIDCFHRFDKTYS---------RSNHSAGH 327
Query: 241 GNTQPPSAFVANSNSQYACPETVIDSNWYADSGASNHVTGDFNNLANTKEYGGNEQVVIG 300
+AF+A+ NS V D +WY DSGASNHVT + E+ G +V+G
Sbjct: 328 DKQGSHNAFLASQNS-------VEDYDWYFDSGASNHVTHQTEKFQDLTEHHGKNSLVVG 387
Query: 301 NGESLPITFTGDTYLSNGAAILSLNNVLCVPEITKNLVSVSKLAQDNDVFIEFHGDCCII 360
NGE L I TG + L + L+L+++L VP ITKNL+SVSKLA DN++ +EF +CC +
Sbjct: 388 NGEKLAILATGSSKLKS----LNLHDILYVPNITKNLLSVSKLAADNNILVEFDENCCFV 447
Query: 361 KDKRSGQEVLKGVLRDGLYQLNNVTRVPGVNEGCSESISKNSTANNHSSVFVVSRYPLSV 420
KDK +G+ +LKG+L+DGLYQL+ R P S FV SV
Sbjct: 448 KDKLTGKVILKGLLKDGLYQLSGTKRNP--------------------SAFV------SV 507
Query: 421 NIIVSKNVWHKRLGHPASRVLDFVINDCKLQVKENEMLSFCESCQFGKSHNLPFPLSSSR 480
K WH+RLGHP ++VLD V+ CK++V ++ SFCE+CQ+GK H LPF SSS
Sbjct: 508 -----KESWHRRLGHPNNKVLDKVLESCKVKVPPSDNFSFCEACQYGKMHLLPFKSSSSH 567
Query: 481 AKYPFELIHSDLWGPAPVLSTDGFQYYVLFLDDYSRYLWLYPLKKKNDALAAFHHFISMV 540
A+ P EL+H+D+WGPAP++++ GF+YYV F+DD+SR+ W+YPLK+K++ + AF F ++
Sbjct: 568 AQEPLELVHTDVWGPAPIMTSSGFKYYVHFVDDFSRFTWIYPLKQKSETVQAFIQFKNLT 627
Query: 541 RNQFGCQIKILQSDNGGEYARIHQECYRLGIISRYSCPYTFAQNGRAERKHRHVVETGLT 600
NQF +IK++Q D GGEY + + GI R SCPYT QNGRAERKHRH+ E GLT
Sbjct: 628 ENQFNKRIKVIQCDGGGEYKPVQKLAVEAGIQFRMSCPYTSQQNGRAERKHRHITEFGLT 687
Query: 601 LLAQASMPLQYWWDAFLAAVQLINGLPTSVLEGKSPLEVLHHKKLNFAGLRSFGCACYPC 660
LLAQA MPL YWW+AF AV LIN LP+ V + +SP ++ K+ ++ L++FGCACYPC
Sbjct: 688 LLAQAQMPLHYWWEAFSTAVYLINRLPSQVTQNESPYSLMLQKEPDYKLLKTFGCACYPC 719
Query: 661 LRPYHNHKFQFHSERCVYLGFSPSHKGHKCLSASGRVFISRHVQFNELMFPF 713
L+PY+ HK Q+H+ RCV+LG+S SHKG+KCL++ GR+FISRHV FNE FPF
Sbjct: 748 LKPYNQHKLQYHTTRCVFLGYSNSHKGYKCLNSHGRIFISRHVIFNEDHFPF 719
BLAST of Lag0027536.1 vs. ExPASy TrEMBL
Match:
A0A2K3LCM1 (Gag/pol polyprotein-maize retrotransposon Hopscotch (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g032236 PE=4 SV=1)
HSP 1 Score: 612.5 bits (1578), Expect = 2.4e-171
Identity = 329/731 (45.01%), Postives = 455/731 (62.24%), Query Frame = 0
Query: 1 MTPEIATQVMGFDNAKDLWSAIQSLFGIQSRAEEDFLRQTFQQSRKGTSKMTDYLRLMKS 60
MT IATQ++ + + LW QSL G +R++ +L+ F +RKG KM DYL MK+
Sbjct: 88 MTVGIATQLLHCETSMQLWDEAQSLAGAHTRSQITYLKSEFHSTRKGEMKMEDYLIKMKN 147
Query: 61 HADNLGQAGSPVSTRNLVSQVLLGLDEEYNPIVAMIHGRGDISWSEMQAELLVFEKRLEL 120
AD L AG+P+ST +L+ Q L GLD EYNP+V + + +SW ++QA+LL FE R+E
Sbjct: 148 LADKLKLAGNPISTSDLIIQTLNGLDSEYNPVVVKLSDQTTLSWVDLQAQLLTFENRIEQ 207
Query: 121 QNTQKAVVSFNHTPTVNVANNKNNMNQNNNRGWNYSHSNGQRGQFYNNNQRGGSNFNNGR 180
N ++ + T NVA ++++RG ++ +N RG NNN R GSNF R
Sbjct: 208 LN---SLTNLTLNATANVA------KKSDHRGNRFNSNNNWRGS--NNNWR-GSNFRGWR 267
Query: 181 GRGGRGRGYGGYGNSNNRQVCQVCGRPGHSALMCYHRFDKEFSPNVNRGGNQNPNNSGNS 240
G GRGR + + CQVCG H A+ C++RFDK +S N+S N+
Sbjct: 268 GGRGRGRSF--------KTTCQVCGLDNHIAIDCFYRFDKTYS---------RSNHSANN 327
Query: 241 GNTQPPSAFVANSNSQYACPETVIDSNWYADSGASNHVTGDFNNLANTKEYGGNEQVVIG 300
+AF+A+ NS + D +WY DSGASNHVT + N E+ G +++G
Sbjct: 328 DKQGSHNAFLASQNS-------IEDYDWYFDSGASNHVTHQTDKFQNLSEHHGKNSLIVG 387
Query: 301 NGESLPITFTGDTYLSNGAAILSLNNVLCVPEITKNLVSVSKLAQDNDVFIEFHGDCCII 360
NGE L I TG + L + L+L+++L VP+ITKNL+SVSKLA DN++ +EF +CC +
Sbjct: 388 NGEKLEIVATGSSKLKS----LNLHDILYVPKITKNLLSVSKLAADNNILVEFDENCCFV 447
Query: 361 KDKRSGQEVLKGVLRDGLYQLNNVTRVPGVNEGCSESISKNSTANNHSSVFVVSRYPLSV 420
KDK +G+ +L+G+L+DGLYQL+ K+S+A
Sbjct: 448 KDKLTGKAILRGILKDGLYQLS----------------EKDSSA---------------- 507
Query: 421 NIIVSKNVWHKRLGHPASRVLDFVINDCKLQVKENEMLSFCESCQFGKSHNLPFPLSSSR 480
+ K WH++LGHP ++VLD V+ C +++ ++ SFCE+CQ+GK H LPF S S
Sbjct: 508 -YVSIKESWHRKLGHPNNKVLDIVLKSCNVKLSPSDQFSFCEACQYGKMHFLPFKTSFSH 567
Query: 481 AKYPFELIHSDLWGPAPVLSTDGFQYYVLFLDDYSRYLWLYPLKKKNDALAAFHHFISMV 540
AK EL+H+D+WGPAP++S+ GF+YYV F+DD++R+ W+YPLK+K+D AF F +MV
Sbjct: 568 AKEILELVHTDVWGPAPIISSSGFKYYVHFIDDFTRFTWIYPLKQKSDTAHAFIQFKNMV 627
Query: 541 RNQFGCQIKILQSDNGGEYARIHQECYRLGIISRYSCPYTFAQNGRAERKHRHVVETGLT 600
NQF +IK +Q D GGEY + + GI R SCPYT QNGRAERKHRH+ E GLT
Sbjct: 628 ENQFSKKIKTIQCDGGGEYKPVQKHAIEAGIQFRMSCPYTSQQNGRAERKHRHIAEFGLT 687
Query: 601 LLAQASMPLQYWWDAFLAAVQLINGLPTSVLEGKSPLEVLHHKKLNFAGLRSFGCACYPC 660
LLAQA MPL YWW+AF AV LIN LP+SV KSP +LH ++ ++ L+ FGCACYP
Sbjct: 688 LLAQAKMPLNYWWEAFSTAVYLINRLPSSVTHNKSPYSLLHKREPDYNSLKPFGCACYPF 745
Query: 661 LRPYHNHKFQFHSERCVYLGFSPSHKGHKCLSASGRVFISRHVQFNELMFPF---ALDFG 720
L+PY+ HK QFH+ RCV+LG+S SHKG+KC+++ GR+FISRHV FNE FPF L+
Sbjct: 748 LKPYNKHKLQFHTTRCVFLGYSNSHKGYKCVNSHGRIFISRHVVFNEDHFPFHDGFLNTR 745
Query: 721 KPSSSPTFSPS 729
P + T SPS
Sbjct: 808 VPLKTLTESPS 745
BLAST of Lag0027536.1 vs. ExPASy TrEMBL
Match:
A0A2K3MUJ9 (Putative retrotransposon Ty1-copia subclass protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g017679 PE=4 SV=1)
HSP 1 Score: 581.6 bits (1498), Expect = 4.6e-162
Identity = 321/717 (44.77%), Postives = 437/717 (60.95%), Query Frame = 0
Query: 1 MTPEIATQVMGFDNAKDLWSAIQSLFGIQSRAEEDFLRQTFQQSRKGTSKMTDYLRLMKS 60
MT +IATQV+ + +K LW QSL G +R+ +L+ F + K KM YL MK+
Sbjct: 87 MTVDIATQVLHCETSKQLWDEAQSLAGAHTRSRIIYLKSEFHNTHKREMKMEQYLAKMKN 146
Query: 61 HADNLGQAGSPVSTRNLVSQVLLGLDEEYNPIVAMIHGRGDISWSEMQAELLVFEKRLEL 120
AD L AGSP+S+ +L+ Q L GLD EYNP+V + + +ISW + QA+LL FE RL+
Sbjct: 147 LADKLKLAGSPISSSDLMIQTLNGLDSEYNPVVVKLSDQTNISWVDFQAQLLAFESRLD- 206
Query: 121 QNTQKAVVSFNHTPTVNVANNKNNMNQNNNRGWNYSHSNGQRGQFYNNNQRGGSNFNNGR 180
NN NN+N N + N++ N G + + RGG +N R
Sbjct: 207 -----------------QLNNFNNINLNASA--NFASKNESGGNKFGS--RGGWRGSNSR 266
Query: 181 G-RGGRGRGYGGYGNSNNRQVCQVCGRPGHSALMCYHRFDKEFSPNVNRGGNQNPNNSGN 240
G RGGRGR + R +CQ+CG+ GH+A CY+RFDK ++ +N G
Sbjct: 267 GMRGGRGR---ARMSKPPRPICQICGKFGHTAAQCYYRFDKSYT-------EKNHYAEGE 326
Query: 241 SGNTQPPSAFVANSNSQYACPETVIDSNWYADSGASNHVTGDFNNLANTKEYGGNEQVVI 300
+ SAFVA+ P D WY DSGASNHVT L + E G +++
Sbjct: 327 GSH----SAFVAS-------PYHGQDYEWYFDSGASNHVTHQSGQLQDLNENNGKNSLLV 386
Query: 301 GNGESLPITFTGDTYLSNGAAILSLNNVLCVPEITKNLVSVSKLAQDNDVFIEFHGDCCI 360
GNGE L I +G T L++ ++L NVL VPEITKNL+SVSKL DN+ +EF + C
Sbjct: 387 GNGEKLKILASGSTKLND----VNLRNVLYVPEITKNLLSVSKLTIDNNALVEFDENYCY 446
Query: 361 IKDKRSGQEVLKGVLRDGLYQLNNVTRVPGVNEGCSESISKNSTANNHSSVFVVSRYPLS 420
+KDK +G+ +LKG L+DGLYQL+ P + C+
Sbjct: 447 VKDKLTGKALLKGRLKDGLYQLSANKEPPTNKDPCA------------------------ 506
Query: 421 VNIIVSKNVWHKRLGHPASRVLDFVINDCKLQVKENEMLSFCESCQFGKSHNLPFPLSSS 480
I K +WH++LGHP ++VL+ V+ D +++ ++ +FCE+CQFGK H LPF SSS
Sbjct: 507 --YISLKEIWHRKLGHPNNKVLEKVLKDNNVKISPSDKFTFCEACQFGKLHLLPFKTSSS 566
Query: 481 RAKYPFELIHSDLWGPAPVLSTDGFQYYVLFLDDYSRYLWLYPLKKKNDALAAFHHFISM 540
AK P +LIH+D+WGPAP+LS F+YYV FLDD+SR+ W++PLK+K++ + AF+ F ++
Sbjct: 567 HAKEPLDLIHTDVWGPAPILSQSNFKYYVHFLDDFSRFTWIFPLKQKSETIHAFNQFKNL 626
Query: 541 VRNQFGCQIKILQSDNGGEYARIHQECYRLGIISRYSCPYTFAQNGRAERKHRHVVETGL 600
V NQF +IK+++ D GGEY + + GI + SCPYT QNGRAERKHRHV E GL
Sbjct: 627 VENQFNKKIKVIRCDGGGEYKPVQKCAIDSGIQFQMSCPYTSQQNGRAERKHRHVTELGL 686
Query: 601 TLLAQASMPLQYWWDAFLAAVQLINGLPTSVLEGKSPLEVLHHKKLNFAGLRSFGCACYP 660
TLLAQA MPL YWW+AF AV LIN LP+SV +SP ++ K+ ++ L+ FGCACYP
Sbjct: 687 TLLAQAKMPLSYWWEAFSTAVYLINRLPSSVNPNESPYTLVFKKEPDYTALKPFGCACYP 730
Query: 661 CLRPYHNHKFQFHSERCVYLGFSPSHKGHKCLSASGRVFISRHVQFNELMFPFALDF 717
CL+PY+ HK QFH+ RCV+LG+S SHKG+KC+++ GRVF+SRHV FNE FPF F
Sbjct: 747 CLKPYNQHKLQFHTTRCVFLGYSNSHKGYKCVNSHGRVFVSRHVVFNENHFPFQEGF 730
BLAST of Lag0027536.1 vs. ExPASy TrEMBL
Match:
A0A2Z6P4D5 (Integrase catalytic domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_412550 PE=4 SV=1)
HSP 1 Score: 576.2 bits (1484), Expect = 1.9e-160
Identity = 316/713 (44.32%), Postives = 433/713 (60.73%), Query Frame = 0
Query: 1 MTPEIATQVMGFDNAKDLWSAIQSLFGIQSRAEEDFLRQTFQQSRKGTSKMTDYLRLMKS 60
M +IATQ++ + +K LW QSL G +++ +L+ F +RKG KM +YL MK+
Sbjct: 88 MAIDIATQLLHCETSKQLWDETQSLAGAHTKSRITYLKSEFHNTRKGEMKMEEYLIKMKN 147
Query: 61 HADNLGQAGSPVSTRNLVSQVLLGLDEEYNPIVAMIHGRGDISWSEMQAELLVFEKRLEL 120
+D L AGSP+S +L+ Q L GLD EYNP+V + + ++SW ++QA+LL FE RL+
Sbjct: 148 LSDKLKLAGSPISNSDLMIQTLNGLDAEYNPVVVKLSDQINLSWVDVQAQLLAFESRLD- 207
Query: 121 QNTQKAVVSFNHTPTVNVANNKNNMNQNNNRGWNYSHSNGQRGQFYNNNQRGGSNFNNGR 180
FN+ + + + N N+ RG + N RG +N R
Sbjct: 208 --------QFNNFSGLTLNASANFANKTEFRGNKF-------------NSRGNWRRSNFR 267
Query: 181 G-RGGRGRGYGGYGNSNNRQVCQVCGRPGHSALMCYHRFDKEFSPNVNRGGNQNPNNSGN 240
G RGGRG+G SN + CQVC GH A+ C +RFD+ P R + + G+
Sbjct: 268 GMRGGRGKG----RMSNTK--CQVCNGTGHIAVDCSYRFDR---PYTGRNYSTEADKQGS 327
Query: 241 SGNTQPPSAFVANSNSQYACPETVIDSNWYADSGASNHVTGDFNNLANTKEYGGNEQVVI 300
SAF+A+ P D WY DSGA+NHVT + E+ G +++
Sbjct: 328 H------SAFIAS-------PYHGQDYEWYFDSGANNHVTHQTDKFQGFNEHNGKNSLMV 387
Query: 301 GNGESLPITFTGDTYLSNGAAILSLNNVLCVPEITKNLVSVSKLAQDNDVFIEFHGDCCI 360
GNGE L I +G T L+N L+L++VL VP+ITKNL+SVSKL DN++ +EF +CC
Sbjct: 388 GNGEKLKIVASGSTKLNN----LNLHDVLYVPQITKNLLSVSKLTADNNILVEFDANCCS 447
Query: 361 IKDKRSGQEVLKGVLRDGLYQLNNVTRVPGVNEGCSESISKNSTANNHSSVFVVSRYPLS 420
+KDK +GQ +LKG L+DGLYQL+N E C K S
Sbjct: 448 VKDKLTGQTLLKGRLKDGLYQLSN-------KEPCVYMSVKES----------------- 507
Query: 421 VNIIVSKNVWHKRLGHPASRVLDFVINDCKLQVKENEMLSFCESCQFGKSHNLPFPLSSS 480
WH++LGHP ++VLD V+ DC +++ ++ SFCE+CQFGK H LPF SSS
Sbjct: 508 ---------WHRKLGHPNNKVLDKVLKDCNVKISHSDQFSFCEACQFGKLHLLPFKPSSS 567
Query: 481 RAKYPFELIHSDLWGPAPVLSTDGFQYYVLFLDDYSRYLWLYPLKKKNDALAAFHHFISM 540
+ P LIHSD+WGPAP+LS GF+YYV F+DD+SR+ W++PLK+K+D + AF F ++
Sbjct: 568 HVQEPLALIHSDVWGPAPILSPSGFKYYVHFIDDFSRFTWIFPLKQKSDTIHAFIQFKNL 627
Query: 541 VRNQFGCQIKILQSDNGGEYARIHQECYRLGIISRYSCPYTFAQNGRAERKHRHVVETGL 600
NQF +IKI+Q D GGEY + + GI R SCPYT QNGRAERKHRHV E GL
Sbjct: 628 AENQFNKKIKIIQCDGGGEYKAVQKVSIEAGIQFRMSCPYTSQQNGRAERKHRHVAELGL 687
Query: 601 TLLAQASMPLQYWWDAFLAAVQLINGLPTSVLEGKSPLEVLHHKKLNFAGLRSFGCACYP 660
TLLAQA MPL+YWW+AF AV LIN LP+SV +SP ++ ++ ++ L+ FGCACYP
Sbjct: 688 TLLAQAKMPLRYWWEAFSTAVYLINRLPSSVNPNESPYSLMFKREPDYNALKPFGCACYP 719
Query: 661 CLRPYHNHKFQFHSERCVYLGFSPSHKGHKCLSASGRVFISRHVQFNELMFPF 713
CL+PY+ HK QFH+ RCV++G+S SHKG+KC+++ GR+F+SRHV FNE FPF
Sbjct: 748 CLKPYNQHKLQFHTTRCVFVGYSNSHKGYKCINSHGRIFVSRHVIFNENHFPF 719
BLAST of Lag0027536.1 vs. TAIR 10
Match:
ATMG00300.1 (Gag-Pol-related retrotransposon family protein )
HSP 1 Score: 62.8 bits (151), Expect = 1.4e-09
Identity = 34/122 (27.87%), Postives = 52/122 (42.62%), Query Frame = 0
Query: 390 VNEGCSESISK-------NSTANNHSSVFVV------SRYPLSVNIIVSKNVWHKRLGHP 449
V CSE + K N H S++++ L+ +WH RL H
Sbjct: 20 VEASCSEGVLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAKDETRLWHSRLAHM 79
Query: 450 ASRVLDFVINDCKLQVKENEMLSFCESCQFGKSHNLPFPLSSSRAKYPFELIHSDLWGPA 499
+ R ++ ++ L + L FCE C +GK+H + F K P + +HSDLWG
Sbjct: 80 SQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGAP 139
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KYP50444.1 | 7.0e-173 | 45.20 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan] | [more] |
GAU19483.1 | 1.7e-171 | 45.65 | hypothetical protein TSUD_77270 [Trifolium subterraneum] | [more] |
PNX76291.1 | 5.1e-171 | 45.01 | gag/pol polyprotein - maize retrotransposon Hopscotch, partial [Trifolium praten... | [more] |
PNX94503.1 | 9.5e-162 | 44.77 | putative retrotransposon Ty1-copia subclass protein, partial [Trifolium pratense... | [more] |
GAU51268.1 | 4.0e-160 | 44.32 | hypothetical protein TSUD_412550 [Trifolium subterraneum] | [more] |
Match Name | E-value | Identity | Description | |
Q94HW2 | 1.7e-105 | 35.40 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... | [more] |
Q9ZT94 | 1.0e-97 | 35.66 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... | [more] |
P10978 | 1.1e-46 | 28.14 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... | [more] |
P04146 | 4.8e-39 | 27.79 | Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3 | [more] |
Q07791 | 2.4e-22 | 24.89 | Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ... | [more] |
Match Name | E-value | Identity | Description | |
A0A151S6M8 | 3.4e-173 | 45.20 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=... | [more] |
A0A2Z6MBG6 | 8.4e-172 | 45.65 | Integrase catalytic domain-containing protein OS=Trifolium subterraneum OX=3900 ... | [more] |
A0A2K3LCM1 | 2.4e-171 | 45.01 | Gag/pol polyprotein-maize retrotransposon Hopscotch (Fragment) OS=Trifolium prat... | [more] |
A0A2K3MUJ9 | 4.6e-162 | 44.77 | Putative retrotransposon Ty1-copia subclass protein (Fragment) OS=Trifolium prat... | [more] |
A0A2Z6P4D5 | 1.9e-160 | 44.32 | Integrase catalytic domain-containing protein OS=Trifolium subterraneum OX=3900 ... | [more] |
Match Name | E-value | Identity | Description | |
ATMG00300.1 | 1.4e-09 | 27.87 | Gag-Pol-related retrotransposon family protein | [more] |