Lag0027532.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0027532.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDNA-directed RNA polymerase III subunit RPC3
Locationchr8: 1776442 .. 1779291 (+)
Sequence length546
RNA-Seq ExpressionLag0027532.1
SyntenyLag0027532.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCATCAATTTCCATCACATTTTGCTCTGTTTCTGTATTTCTCGTTCTTAGGGCTTTGATTTCTCCAGATTTTCACCAAATAATCGGTAATTTCCTTTGATCTTTCTGTTTCCGAATGAAGAACTGATTATCGACTCAATCTTTATAGGGTTTTAATCATATCGTAACGATTGTGAACCATTATGGCAAAGCAGGTTAAGGTCTGTTAAAAACTTTTTTTTTCTTTCAACTTTATCTTGTTTAGAAGACTAAATTTGTGTTTAATTCCTAAAATTGTGATAACATTAATGAAGAAATAACATAATTTAGAAGGTGGCTTTTGCACTGGAAAATTGTTTGTTACACGTTTTTGCTTATAATATGTCCATGTATATAAACGTTTGGTTTTTTAAGTATTGTTTCTGTATTTTTAGGAAACCATCCAATTCCAAATGTTGTACATGACAGTCTATTTAAACTTTTGAATGCCCATTTTGTCGAACGTTGTCCAACCCCTGAACCAACTCTTTCACCCCAAGTTGAAGAACAACCTCCTCCTAGGAAAAGAGGTGCTAAGGCTGCCAAGGTAGCTGCTGCATGTCTGTGAAGCTTTTCGTGCATATTGGTTCTAAATATTATCTTTGAGTCATTAAATGGATCCATAACAGATATCTGAGATGCCAGCAACCTTAGAGCAACCTCTTCTAGAAACAGCCCGTCCAATGGAAGTTCTAAGATTTTCAATAGGTGAAACCAACACATAAGCTAAAAAGAAAGAACATTATTCACCAATTTTTGGACAGAAGAAGGTATTTGAGAACTTTATATTAACTTACTAAGTTGAATCATGTTTAGTACTTACTCAATTTTTTTTTCCTAATTTTGTAGCACAAGCGTGGAGATCAGGAGGTGGTACAAGAGACTGGAGATGCAAATAGTATTATTTTTTGGCGTGCCAACTTTGATGAGTTCATAAGATGTCTTAGACATAAGCTTAGTATTACAGTGAATGCCATGCCTCATTTCTTGCATTCAAATTAATGATGAGAAAGAAAACCAAGCATGAAAAATGAGTAATTTAACTCACTTGAAACCTACTGATAGAGTACTTCATGCAATTTTGCAGGTATATTGATATTATTTTGTTCAATATTTGAAAAATTATTAACTTGACTTTAAATGCATTATTCATCCCATGCTAACTCCTCCCACTCCTGGGTTTCATTTACTTTCTTTGTGTGTTATAATTTGCTGCTTTTGTTGTCCATCGCTTTATGTTTTTTTCCTTTTGTCAAACTTTTTTTTTTTGTTAAATTGATTGAATAACTTGATAATGATCTTAATGCTGGTGTTTCTGCTTATGGGTTTTGAGTTCTCAAGGTGAAGGAGACCAAGAAGAGGTTCCAGGAGAGTTTCAAGAACAAGAAGAACATGTGGTTTTTCACCAAGCTCAGGTTCTGAAGAGTCTTATCTAGTCTTGTTATGTTGTTTGTTTACTCTGGATTCACCAAGCTTAGGCTCATTAGTTGATTTATGGATTGGCTCCCTATCAATTCATTCTATTTGGTGAAGAAGAATAATACTAGTAAGAACTCAAGTTGGCCGAAGGGAGTGGTGGATGAATTGTTATTGTTTTCTTCATTGAAAGTTTACTGACTGAAATATATAACTTTAAAAGAATCTAGAGAAAGAGGTACGAAAGAGGTATGCAAATAGTGTAGATTTAAAGAATAAATTAAATTGACATCTAAACGGTGTTTGTAACCATTTGGAAAACGTTAGTTTTTGTTTAGCTCTTCCGCTAATTAATTTTCTCCTTGTGTTCTTCTAGAATTCTTTTCCAATCCGTTCTTTATACGATTTGACTGTATACAATGGTGATGGTGGTTGCTCTTTTGTAAGTTTTTTGTTCTCTTTCTTTATACGATTTGAATGTATTGGCATTTGACTTTGTCGAGGTTGAAGCTGCTAGAGGAGAAAGTGACATGTTGTGCTCGAATTTTCTCCTTATGTCTACTTTATTAATTATTCTGGAAAATCTTATTTGGAAGTTGCGTGTTGTGTTTTCTTTTAAGTAAAATGAATATCCATTTTACTTTTCAGTTTTGCTATTACTTTTCAGTTTTGTGCACATTATTTATACAGTGTTGGTCAATTTAGCAGTAGATAATACATGTAGTCTAAAATGAATTTTGTACTAGTTTTTATTTGTTATTGGCATCTATCTTAACTTCCCAAAATTTGTTTTACCAAACACAATTTCCAATTTGTTACTTAGATTAGTTTGACAATGTAGATCTATTCTACAAGCCGCTCTTGTTTTTTTTCTTTTTGTGACAATCTAAGTGTTGTGAACCTGAAGTGTTGTGAGGCTGTAGCTGGGTGATTTTTTTCATATAGAAGTGTGTTTCTCTTGTTTAACAGGTTTAAAATTTTTTGAGTTAGTCATATGTATGTCGTTATGCTGTCGAAATTTCTAGAACAATCGGTTAGAATTAGGATAGACGCTTTAGTAATGTCTCTAAGTTAAGTATAGAAACCTAGAGCATTACAGGTTCTCTGAAGGAGTTAAACTTGATATCTTGAAGTTTGTAAGCTTTTGGAGTTTATTGGGTTTTCTAACAATTTTTTCCGATACTCATCGAGATTGGTTTTTTTTTTGTGAATTTTATTGCTAACTAAATTTGTTTTTCTTAAGTTCTTCGAGTTGTTGGACATATGTTTGTTATGTGAGTTCTTGTTTTGGCGTTGTATCGAACCTAATTACAATTTGTTTTTCTAGGGTTCTTCAAGTTTGATGTACGAGCAAGATTATGGTGACAAGAATGAAAGTGGCATGTACGAGAATTTTTGTTTTTTGGCGTAG

mRNA sequence

ATGGCTTCATCAATTTCCATCACATTTTGCTCTGTTTCTGTATTTCTCGTTCTTAGGGCTTTGATTTCTCCAGATTTTCACCAAATAATCGGAAACCATCCAATTCCAAATGTTGTACATGACAGTCTATTTAAACTTTTGAATGCCCATTTTGTCGAACGTTGTCCAACCCCTGAACCAACTCTTTCACCCCAAGTTGAAGAACAACCTCCTCCTAGGAAAAGAGGTGCTAAGGCTGCCAAGATATCTGAGATGCCAGCAACCTTAGAGCAACCTCTTCTAGAAACAGCCCGTCCAATGGAAGTTCTAAGATTTTCAATAGGTGAAGGAGACCAAGAAGAGGTTCCAGGAGAGTTTCAAGAACAAGAAGAACATGTGGTTTTTCACCAAGCTCAGAATTCTTTTCCAATCCGTTCTTTATACGATTTGACTGTATACAATGGTGATGGTGGTTGCTCTTTTGGTTCTTCAAGTTTGATGTACGAGCAAGATTATGGTGACAAGAATGAAAGTGGCATGTACGAGAATTTTTGTTTTTTGGCGTAG

Coding sequence (CDS)

ATGGCTTCATCAATTTCCATCACATTTTGCTCTGTTTCTGTATTTCTCGTTCTTAGGGCTTTGATTTCTCCAGATTTTCACCAAATAATCGGAAACCATCCAATTCCAAATGTTGTACATGACAGTCTATTTAAACTTTTGAATGCCCATTTTGTCGAACGTTGTCCAACCCCTGAACCAACTCTTTCACCCCAAGTTGAAGAACAACCTCCTCCTAGGAAAAGAGGTGCTAAGGCTGCCAAGATATCTGAGATGCCAGCAACCTTAGAGCAACCTCTTCTAGAAACAGCCCGTCCAATGGAAGTTCTAAGATTTTCAATAGGTGAAGGAGACCAAGAAGAGGTTCCAGGAGAGTTTCAAGAACAAGAAGAACATGTGGTTTTTCACCAAGCTCAGAATTCTTTTCCAATCCGTTCTTTATACGATTTGACTGTATACAATGGTGATGGTGGTTGCTCTTTTGGTTCTTCAAGTTTGATGTACGAGCAAGATTATGGTGACAAGAATGAAAGTGGCATGTACGAGAATTTTTGTTTTTTGGCGTAG

Protein sequence

MASSISITFCSVSVFLVLRALISPDFHQIIGNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKRGAKAAKISEMPATLEQPLLETARPMEVLRFSIGEGDQEEVPGEFQEQEEHVVFHQAQNSFPIRSLYDLTVYNGDGGCSFGSSSLMYEQDYGDKNESGMYENFCFLA
Homology
[Close]
BLAST of Lag0027532.1 vs. NCBI nr
Match: TYK22958.1 (DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 139.0 bits (349), Expect = 3.9e-29
Identity = 69/92 (75.00%), Postives = 77/92 (83.70%), Query Frame = 0 

Query: 31  GNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKRGAKAAKISEMPATLE 90
           GN PIP+VVHDSLFKLLNAHFVERCP PEPTLSP+VEEQPPPRKRGAKAAKI E+P TLE
Sbjct: 145 GNRPIPDVVHDSLFKLLNAHFVERCPAPEPTLSPKVEEQPPPRKRGAKAAKIFEVPETLE 204

Query: 91  QPLLETARPMEVLRFSIGEGDQEEVPGEFQEQ 123
           Q L+E ARP+EVLRFS+G+ + E    E   Q
Sbjct: 205 QRLIEAARPVEVLRFSMGDTNPEAEKSEHYSQ 236

[Close]
BLAST of Lag0027532.1 vs. NCBI nr
Match: XP_008439232.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo] >XP_008439233.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo])

HSP 1 Score: 139.0 bits (349), Expect = 3.9e-29
Identity = 69/92 (75.00%), Postives = 77/92 (83.70%), Query Frame = 0 

Query: 31  GNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKRGAKAAKISEMPATLE 90
           GN PIP+VVHDSLFKLLNAHFVERCP PEPTLSP+VEEQPPPRKRGAKAAKI E+P TLE
Sbjct: 145 GNRPIPDVVHDSLFKLLNAHFVERCPAPEPTLSPKVEEQPPPRKRGAKAAKIFEVPETLE 204

Query: 91  QPLLETARPMEVLRFSIGEGDQEEVPGEFQEQ 123
           Q L+E ARP+EVLRFS+G+ + E    E   Q
Sbjct: 205 QRLIEAARPVEVLRFSMGDTNPEAEKSEHYSQ 236

[Close]
BLAST of Lag0027532.1 vs. NCBI nr
Match: KAA0033658.1 (DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 139.0 bits (349), Expect = 3.9e-29
Identity = 69/92 (75.00%), Postives = 77/92 (83.70%), Query Frame = 0 

Query: 31  GNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKRGAKAAKISEMPATLE 90
           GN PIP+VVHDSLFKLLNAHFVERCP PEPTLSP+VEEQPPPRKRGAKAAKI E+P TLE
Sbjct: 173 GNRPIPDVVHDSLFKLLNAHFVERCPAPEPTLSPKVEEQPPPRKRGAKAAKIFEVPETLE 232

Query: 91  QPLLETARPMEVLRFSIGEGDQEEVPGEFQEQ 123
           Q L+E ARP+EVLRFS+G+ + E    E   Q
Sbjct: 233 QRLIEAARPVEVLRFSMGDTNPEAEKSEHYSQ 264

[Close]
BLAST of Lag0027532.1 vs. NCBI nr
Match: XP_008439235.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X2 [Cucumis melo] >XP_016899098.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X2 [Cucumis melo])

HSP 1 Score: 139.0 bits (349), Expect = 3.9e-29
Identity = 69/92 (75.00%), Postives = 77/92 (83.70%), Query Frame = 0 

Query: 31  GNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKRGAKAAKISEMPATLE 90
           GN PIP+VVHDSLFKLLNAHFVERCP PEPTLSP+VEEQPPPRKRGAKAAKI E+P TLE
Sbjct: 49  GNRPIPDVVHDSLFKLLNAHFVERCPAPEPTLSPKVEEQPPPRKRGAKAAKIFEVPETLE 108

Query: 91  QPLLETARPMEVLRFSIGEGDQEEVPGEFQEQ 123
           Q L+E ARP+EVLRFS+G+ + E    E   Q
Sbjct: 109 QRLIEAARPVEVLRFSMGDTNPEAEKSEHYSQ 140

[Close]
BLAST of Lag0027532.1 vs. NCBI nr
Match: XP_038878061.1 (DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Benincasa hispida] >XP_038878062.1 DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Benincasa hispida])

HSP 1 Score: 138.7 bits (348), Expect = 5.1e-29
Identity = 67/92 (72.83%), Postives = 79/92 (85.87%), Query Frame = 0 

Query: 31  GNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKRGAKAAKISEMPATLE 90
           GN PIP++VHDSLFKLLNAHFVERCP PEP+LSP+VEEQPPP+KRGAKAAKISE+P TLE
Sbjct: 145 GNRPIPDIVHDSLFKLLNAHFVERCPAPEPSLSPKVEEQPPPKKRGAKAAKISEVPETLE 204

Query: 91  QPLLETARPMEVLRFSIGEGDQEEVPGEFQEQ 123
           Q ++E+ARPMEVLRFS+G+ + E    E   Q
Sbjct: 205 QRVVESARPMEVLRFSMGDTNTEAEKSEHYSQ 236

The following BLAST results are available for this feature:
BLAST of Lag0027532.1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK22958.13.9e-2975.00DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo var. makuw... [more]
XP_008439232.13.9e-2975.00PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo... [more]
KAA0033658.13.9e-2975.00DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo var. makuw... [more]
XP_008439235.13.9e-2975.00PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X2 [Cucumis melo... [more]
XP_038878061.15.1e-2972.83DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Benincasa hispida] >XP_... [more]
BLAST of Lag0027532.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..81

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0027532Lag0027532gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0027532.1.exon1Lag0027532.1.exon1exon
Lag0027532.1.exon2Lag0027532.1.exon2exon
Lag0027532.1.exon3Lag0027532.1.exon3exon
Lag0027532.1.exon4Lag0027532.1.exon4exon
Lag0027532.1.exon5Lag0027532.1.exon5exon
Lag0027532.1.exon6Lag0027532.1.exon6exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0027532.1cds.Lag0027532.1CDS
cds.Lag0027532.1cds.Lag0027532.1_2CDS
cds.Lag0027532.1cds.Lag0027532.1_3CDS
cds.Lag0027532.1cds.Lag0027532.1_4CDS
cds.Lag0027532.1cds.Lag0027532.1_5CDS
cds.Lag0027532.1cds.Lag0027532.1_6CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0027532.1Lag0027532.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005666 RNA polymerase III complex
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0003697 single-stranded DNA binding